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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 16;67(Pt 5):m598. doi: 10.1107/S1600536811013328

[1,2-Bis(pyridin-2-ylmeth­oxy)benzene-κ4 N,O,O′,N′]bis­(nitrato-κO)cobalt(II)

Nan-Nan Huang a, Ying-Hui Yu b, Ying Liu b, Guang-Feng Hou c, Jin-Sheng Gao b,c,*
PMCID: PMC3089074  PMID: 21754318

Abstract

In the title compound, [Co(NO3)2(C18H16N2O2)], the CoII ion is six-coordinated in a distorted octa­hedral environment defined by two O and two N atoms from the ligand and by two O atoms from two nitrate anions. A two-dimensional network parallel to the ab plane is built up by C—H⋯O hydrogen bonds, which link adjacent mol­ecules in the crystal structure.

Related literature

For the synthesis and general backround to flexible pyridyl-based ligands, see: Liu et al. (2010a ,b ). For a related structure, see: Yu et al. (2010).graphic file with name e-67-0m598-scheme1.jpg

Experimental

Crystal data

  • [Co(NO3)2(C18H16N2O2)]

  • M r = 475.28

  • Triclinic, Inline graphic

  • a = 8.6281 (17) Å

  • b = 10.701 (2) Å

  • c = 10.921 (2) Å

  • α = 78.77 (3)°

  • β = 79.04 (3)°

  • γ = 78.55 (3)°

  • V = 957.2 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.95 mm−1

  • T = 291 K

  • 0.24 × 0.21 × 0.19 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.803, T max = 0.840

  • 9403 measured reflections

  • 4317 independent reflections

  • 2942 reflections with I > 2σ(I)

  • R int = 0.033

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.098

  • S = 1.04

  • 4317 reflections

  • 280 parameters

  • H-atom parameters constrained

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.44 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013328/ng5146sup1.cif

e-67-0m598-sup1.cif (19.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013328/ng5146Isup2.hkl

e-67-0m598-Isup2.hkl (211.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6A⋯O3i 0.97 2.46 3.241 (3) 138
C13—H13A⋯O6ii 0.97 2.42 3.296 (4) 150
C17—H17⋯O7iii 0.93 2.58 3.469 (4) 160
C18—H18⋯O7 0.93 2.56 2.970 (4) 107

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the Special Funds for the Research of Scientific and Technological Innovative Talents of Harbin Municipal Science and Technology Bureau (2009­RFXXG027), the Science and Technology Planning Project of Heilongjiang Province (GZ08A401) and Heilongjiang University for supporting this study.

supplementary crystallographic information

Comment

In recent, our group has employed the flexible N-heterocyclic ligands reacting with transition metal to construct several supramolecular architectures (Liu et al. 2010a, 2010b; Yu et al. 2010). As a part of our continuing work for bipyridyl aromatic ligands, we report the crystal structure of the title compound here.

1,2-Bis(pyridin-2-ylmethoxy)benzene molecule act as a chelating ligand to coordinate with CoII ion forming a discrete structure. Two nitrate anions also coordinate to the center CoII ion, resulting the CoII ion is six-coordinated in a distorted octahedral environment (Figure 1).

A two-dimensional network, which parallel to ab plane, is built up by the C—H···O hydrogen bonds linking these isolated complexes (Figure 2, Tbale 1).

Experimental

The 1,2-Bis(pyridin-2-ylmethoxy)benzene was synthesized by the reaction of ο-dihydroxybenzene and 2-chloromethylpyridine hydrochloride under nitrogen atmosphere and alkaline condition (Liu et al., 2010a). Title ligand (0.58 g, 2 mmol) and Co(NO3)2.H2O (0.44 g, 2 mmol) were dissolved in 15 ml e thanol, and then the mixture keep stirring for 30 minute. The resulting solution was filtered, and the filtrate was allowed to stand in a desiccator at room temperature for several days. Red block crystals were obtained.

Refinement

The reflection data (4 0 5) had been omitted in the refinement. H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic C), C—H = 0.97 Å (methene C), and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of title compound, showing the atom-labellingscheme and displacement ellipsoids drawn at 50% probability level.

Fig. 2.

Fig. 2.

A partial packing view, showing the planar structure parallelled ab plane. Dashed lines indicate the hydrogen bonds and, no involving H atoms have been omitted for clarity.

Crystal data

[Co(NO3)2(C18H16N2O2)] Z = 2
Mr = 475.28 F(000) = 486
Triclinic, P1 Dx = 1.649 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.6281 (17) Å Cell parameters from 6221 reflections
b = 10.701 (2) Å θ = 3.0–27.5°
c = 10.921 (2) Å µ = 0.95 mm1
α = 78.77 (3)° T = 291 K
β = 79.04 (3)° Block, red
γ = 78.55 (3)° 0.24 × 0.21 × 0.19 mm
V = 957.2 (3) Å3

Data collection

Rigaku R-AXIS RAPID diffractometer 4317 independent reflections
Radiation source: fine-focus sealed tube 2942 reflections with I > 2σ(I)
graphite Rint = 0.033
ω scans θmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −11→11
Tmin = 0.803, Tmax = 0.840 k = −13→13
9403 measured reflections l = −14→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0345P)2 + 0.4119P] where P = (Fo2 + 2Fc2)/3
4317 reflections (Δ/σ)max < 0.001
280 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.44 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.0687 (3) 0.3713 (3) 0.2950 (3) 0.0486 (7)
H1 0.0015 0.4286 0.2579 0.058*
C2 −0.2202 (3) 0.4199 (3) 0.3487 (3) 0.0554 (7)
H2 −0.2512 0.5083 0.3484 0.066*
C3 −0.3259 (3) 0.3361 (3) 0.4030 (3) 0.0555 (8)
H3 −0.4289 0.3667 0.4408 0.067*
C4 −0.2763 (3) 0.2067 (3) 0.4004 (2) 0.0477 (7)
H4 −0.3459 0.1484 0.4356 0.057*
C5 −0.1215 (3) 0.1633 (2) 0.3447 (2) 0.0372 (5)
C6 −0.0689 (3) 0.0228 (2) 0.3402 (3) 0.0443 (6)
H6A −0.0768 −0.0254 0.4255 0.053*
H6B −0.1383 −0.0067 0.2956 0.053*
C7 0.1666 (3) −0.1270 (2) 0.2818 (3) 0.0440 (6)
C8 0.0924 (3) −0.2336 (3) 0.3200 (3) 0.0506 (7)
H8 −0.0179 −0.2243 0.3452 0.061*
C9 0.1852 (4) −0.3553 (3) 0.3201 (3) 0.0591 (8)
H9 0.1365 −0.4283 0.3450 0.071*
C10 0.3477 (4) −0.3692 (3) 0.2842 (3) 0.0573 (8)
H10 0.4086 −0.4515 0.2868 0.069*
C11 0.4228 (3) −0.2613 (3) 0.2436 (3) 0.0504 (7)
H11 0.5330 −0.2706 0.2177 0.060*
C12 0.3307 (3) −0.1406 (2) 0.2426 (2) 0.0425 (6)
C13 0.5543 (3) −0.0297 (3) 0.1678 (3) 0.0501 (7)
H13A 0.5946 −0.0789 0.0992 0.060*
H13B 0.6077 −0.0716 0.2392 0.060*
C14 0.5874 (3) 0.1051 (3) 0.1271 (2) 0.0431 (6)
C15 0.7396 (3) 0.1244 (3) 0.0648 (3) 0.0591 (8)
H15 0.8175 0.0546 0.0449 0.071*
C16 0.7728 (4) 0.2473 (4) 0.0331 (3) 0.0686 (10)
H16 0.8734 0.2624 −0.0089 0.082*
C17 0.6556 (4) 0.3484 (3) 0.0643 (3) 0.0654 (9)
H17 0.6768 0.4325 0.0463 0.078*
C18 0.5062 (4) 0.3233 (3) 0.1226 (3) 0.0542 (7)
H18 0.4265 0.3924 0.1414 0.065*
Co1 0.22927 (4) 0.16895 (4) 0.22727 (4) 0.04752 (14)
N1 −0.0169 (2) 0.2441 (2) 0.29360 (19) 0.0399 (5)
N2 0.4706 (2) 0.2029 (2) 0.15346 (19) 0.0417 (5)
N3 0.2919 (2) 0.2222 (3) 0.4483 (2) 0.0494 (6)
N4 0.1734 (3) 0.2913 (3) −0.0118 (3) 0.0585 (7)
O1 0.0897 (2) 0.00028 (17) 0.2786 (2) 0.0574 (6)
O2 0.3876 (2) −0.02515 (17) 0.2020 (2) 0.0546 (5)
O3 0.2818 (2) 0.1180 (2) 0.41373 (19) 0.0591 (5)
O4 0.3220 (3) 0.2203 (3) 0.5536 (2) 0.0902 (9)
O5 0.2706 (3) 0.3219 (2) 0.3710 (2) 0.0711 (6)
O6 0.1839 (2) 0.1745 (2) 0.04378 (19) 0.0600 (5)
O7 0.1811 (3) 0.3725 (3) 0.0520 (3) 0.0840 (8)
O8 0.1569 (3) 0.3154 (3) −0.1235 (2) 0.1009 (10)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0457 (15) 0.0407 (15) 0.0580 (17) −0.0091 (12) −0.0044 (13) −0.0063 (13)
C2 0.0514 (16) 0.0496 (17) 0.0618 (18) 0.0043 (13) −0.0104 (14) −0.0126 (14)
C3 0.0373 (14) 0.070 (2) 0.0531 (17) 0.0016 (14) −0.0013 (13) −0.0109 (15)
C4 0.0342 (13) 0.0594 (18) 0.0448 (15) −0.0084 (12) −0.0036 (11) 0.0005 (13)
C5 0.0324 (12) 0.0445 (14) 0.0340 (12) −0.0096 (10) −0.0045 (10) −0.0021 (11)
C6 0.0319 (12) 0.0455 (15) 0.0522 (15) −0.0147 (11) 0.0007 (11) 0.0009 (12)
C7 0.0453 (14) 0.0359 (14) 0.0508 (15) −0.0122 (11) −0.0026 (12) −0.0061 (12)
C8 0.0515 (15) 0.0435 (16) 0.0602 (17) −0.0209 (13) −0.0058 (13) −0.0064 (13)
C9 0.080 (2) 0.0359 (15) 0.068 (2) −0.0218 (15) −0.0189 (17) −0.0047 (14)
C10 0.074 (2) 0.0354 (15) 0.0637 (19) −0.0036 (14) −0.0168 (16) −0.0099 (13)
C11 0.0520 (16) 0.0444 (16) 0.0535 (16) −0.0015 (13) −0.0103 (13) −0.0094 (13)
C12 0.0447 (14) 0.0338 (13) 0.0496 (15) −0.0117 (11) −0.0034 (12) −0.0070 (11)
C13 0.0313 (12) 0.0565 (17) 0.0586 (17) −0.0069 (12) −0.0021 (12) −0.0053 (14)
C14 0.0326 (12) 0.0611 (17) 0.0369 (13) −0.0166 (12) −0.0047 (10) −0.0032 (12)
C15 0.0362 (14) 0.091 (2) 0.0493 (16) −0.0195 (15) −0.0026 (12) −0.0036 (16)
C16 0.0487 (17) 0.106 (3) 0.0537 (18) −0.0442 (19) −0.0098 (14) 0.0134 (19)
C17 0.076 (2) 0.075 (2) 0.0544 (18) −0.0507 (19) −0.0187 (16) 0.0144 (16)
C18 0.0658 (18) 0.0554 (18) 0.0467 (15) −0.0321 (15) −0.0092 (14) 0.0016 (13)
Co1 0.03625 (19) 0.0440 (2) 0.0571 (2) −0.01247 (15) 0.00876 (16) −0.00555 (17)
N1 0.0346 (10) 0.0406 (12) 0.0432 (12) −0.0088 (9) −0.0029 (9) −0.0040 (9)
N2 0.0417 (11) 0.0469 (13) 0.0372 (11) −0.0196 (10) −0.0020 (9) −0.0005 (9)
N3 0.0327 (11) 0.0671 (17) 0.0470 (14) −0.0159 (11) 0.0004 (10) −0.0050 (13)
N4 0.0333 (11) 0.0727 (19) 0.0576 (16) −0.0093 (12) 0.0030 (11) 0.0084 (14)
O1 0.0376 (9) 0.0350 (10) 0.0902 (15) −0.0131 (8) 0.0185 (10) −0.0082 (10)
O2 0.0345 (9) 0.0371 (10) 0.0862 (14) −0.0092 (8) 0.0084 (9) −0.0098 (9)
O3 0.0589 (12) 0.0505 (12) 0.0645 (13) −0.0210 (10) 0.0053 (10) −0.0035 (10)
O4 0.0743 (16) 0.159 (3) 0.0483 (13) −0.0396 (17) −0.0144 (12) −0.0176 (15)
O5 0.0630 (13) 0.0517 (13) 0.0877 (16) −0.0118 (10) −0.0046 (12) 0.0102 (12)
O6 0.0488 (11) 0.0600 (13) 0.0646 (13) −0.0102 (10) 0.0015 (10) −0.0032 (11)
O7 0.0663 (15) 0.0733 (17) 0.114 (2) −0.0218 (13) −0.0009 (14) −0.0223 (16)
O8 0.0746 (16) 0.156 (3) 0.0518 (14) −0.0088 (17) −0.0101 (12) 0.0219 (16)

Geometric parameters (Å, °)

C1—N1 1.347 (3) C13—O2 1.410 (3)
C1—C2 1.371 (4) C13—C14 1.492 (4)
C1—H1 0.9300 C13—H13A 0.9700
C2—C3 1.379 (4) C13—H13B 0.9700
C2—H2 0.9300 C14—N2 1.335 (3)
C3—C4 1.370 (4) C14—C15 1.394 (3)
C3—H3 0.9300 C15—C16 1.366 (5)
C4—C5 1.388 (3) C15—H15 0.9300
C4—H4 0.9300 C16—C17 1.373 (5)
C5—N1 1.343 (3) C16—H16 0.9300
C5—C6 1.489 (4) C17—C18 1.378 (4)
C6—O1 1.403 (3) C17—H17 0.9300
C6—H6A 0.9700 C18—N2 1.348 (3)
C6—H6B 0.9700 C18—H18 0.9300
C7—C8 1.375 (4) Co1—O6 2.101 (2)
C7—C12 1.386 (4) Co1—O3 2.114 (2)
C7—O1 1.388 (3) Co1—N1 2.156 (2)
C8—C9 1.387 (4) Co1—N2 2.159 (2)
C8—H8 0.9300 Co1—O2 2.2825 (19)
C9—C10 1.369 (4) Co1—O1 2.2876 (19)
C9—H9 0.9300 N3—O4 1.223 (3)
C10—C11 1.392 (4) N3—O5 1.230 (3)
C10—H10 0.9300 N3—O3 1.268 (3)
C11—C12 1.374 (4) N4—O8 1.226 (3)
C11—H11 0.9300 N4—O7 1.233 (4)
C12—O2 1.382 (3) N4—O6 1.272 (3)
N1—C1—C2 123.0 (3) C16—C15—C14 119.1 (3)
N1—C1—H1 118.5 C16—C15—H15 120.5
C2—C1—H1 118.5 C14—C15—H15 120.5
C1—C2—C3 119.1 (3) C15—C16—C17 119.1 (3)
C1—C2—H2 120.4 C15—C16—H16 120.5
C3—C2—H2 120.4 C17—C16—H16 120.5
C4—C3—C2 118.7 (3) C16—C17—C18 119.1 (3)
C4—C3—H3 120.7 C16—C17—H17 120.5
C2—C3—H3 120.7 C18—C17—H17 120.5
C3—C4—C5 119.5 (3) N2—C18—C17 122.8 (3)
C3—C4—H4 120.2 N2—C18—H18 118.6
C5—C4—H4 120.2 C17—C18—H18 118.6
N1—C5—C4 122.1 (2) O6—Co1—O3 167.12 (8)
N1—C5—C6 118.6 (2) O6—Co1—N1 92.66 (8)
C4—C5—C6 119.3 (2) O3—Co1—N1 91.78 (8)
O1—C6—C5 110.0 (2) O6—Co1—N2 90.83 (8)
O1—C6—H6A 109.7 O3—Co1—N2 91.54 (8)
C5—C6—H6A 109.7 N1—Co1—N2 149.17 (8)
O1—C6—H6B 109.7 O6—Co1—O2 85.45 (9)
C5—C6—H6B 109.7 O3—Co1—O2 83.28 (9)
H6A—C6—H6B 108.2 N1—Co1—O2 139.03 (8)
C8—C7—C12 120.7 (2) N2—Co1—O2 71.79 (8)
C8—C7—O1 125.1 (2) O6—Co1—O1 84.09 (9)
C12—C7—O1 114.2 (2) O3—Co1—O1 85.79 (8)
C7—C8—C9 118.7 (3) N1—Co1—O1 72.04 (7)
C7—C8—H8 120.6 N2—Co1—O1 138.79 (8)
C9—C8—H8 120.6 O2—Co1—O1 67.05 (6)
C10—C9—C8 120.7 (3) C5—N1—C1 117.6 (2)
C10—C9—H9 119.6 C5—N1—Co1 120.29 (17)
C8—C9—H9 119.6 C1—N1—Co1 121.93 (17)
C9—C10—C11 120.6 (3) C14—N2—C18 117.5 (2)
C9—C10—H10 119.7 C14—N2—Co1 120.61 (17)
C11—C10—H10 119.7 C18—N2—Co1 121.64 (19)
C12—C11—C10 118.6 (3) O4—N3—O5 123.2 (3)
C12—C11—H11 120.7 O4—N3—O3 120.1 (3)
C10—C11—H11 120.7 O5—N3—O3 116.7 (2)
C11—C12—O2 125.1 (2) O8—N4—O7 124.7 (3)
C11—C12—C7 120.6 (2) O8—N4—O6 118.6 (3)
O2—C12—C7 114.3 (2) O7—N4—O6 116.7 (3)
O2—C13—C14 108.7 (2) C7—O1—C6 117.91 (19)
O2—C13—H13A 110.0 C7—O1—Co1 121.70 (15)
C14—C13—H13A 110.0 C6—O1—Co1 118.14 (15)
O2—C13—H13B 110.0 C12—O2—C13 118.1 (2)
C14—C13—H13B 110.0 C12—O2—Co1 121.94 (14)
H13A—C13—H13B 108.3 C13—O2—Co1 118.68 (16)
N2—C14—C15 122.4 (3) N3—O3—Co1 106.43 (17)
N2—C14—C13 118.6 (2) N4—O6—Co1 107.7 (2)
C15—C14—C13 118.9 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C6—H6A···O3i 0.97 2.46 3.241 (3) 138
C13—H13A···O6ii 0.97 2.42 3.296 (4) 150
C17—H17···O7iii 0.93 2.58 3.469 (4) 160
C18—H18···O7 0.93 2.56 2.970 (4) 107

Symmetry codes: (i) −x, −y, −z+1; (ii) −x+1, −y, −z; (iii) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5146).

References

  1. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  2. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010a). Cryst. Growth Des. 10, 1559–1568.
  3. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010b). Inorg. Chem. Commun. 13, 630–632.
  4. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  5. Rigaku/MSC (2002). CrystalClear Rigaku/MSC Inc., The Woodlands, Texas, USA.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Yu, Y.-H., Gao, J.-S., Wang, L.-X., Liu, Y. & Hou, G.-F. (2010). Acta Cryst. E66, m872. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013328/ng5146sup1.cif

e-67-0m598-sup1.cif (19.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013328/ng5146Isup2.hkl

e-67-0m598-Isup2.hkl (211.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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