Abstract
The 13 non-H atoms comprising the title compound, C9H10N2O2, are close to planar (r.m.s. deviation = 0.140 Å), with maximum deviations of 0.292 (1) and 0.210 (1) Å to either side of the least-squares plane exhibited by the hydroxy and carbonyl O atoms, respectively. The observed conformation is stabilized by an intramolecular O—H⋯N hydrogen bond. The conformation about the N=C double bond [1.2909 (16) Å] is E. The hydroxy OH group also forms an intermolecular hydrogen bond to a carbonyl O atom, and the amine H atom similarly forms an N—H⋯O hydrogen bond to a second carbonyl O atom. The result is the formation of a double layer with a flat topology. Layers stack along the a-axis direction connected by C—H⋯π interactions.
Related literature
For background and recent studies on the biological activity of tin/organotin compounds, see: Gielen & Tiekink (2005 ▶); Affan et al. (2009 ▶).
Experimental
Crystal data
C9H10N2O2
M r = 178.19
Monoclinic,
a = 7.3239 (3) Å
b = 12.0837 (7) Å
c = 9.6836 (4) Å
β = 99.119 (4)°
V = 846.17 (7) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 100 K
0.20 × 0.15 × 0.10 mm
Data collection
Agilent Supernova Dual diffractometer with an Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.734, T max = 1.000
7879 measured reflections
1920 independent reflections
1544 reflections with I > 2σ(I)
R int = 0.042
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.114
S = 1.03
1920 reflections
127 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.21 e Å−3
Δρmin = −0.22 e Å−3
Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013717/hg5024sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013717/hg5024Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C4–C9 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N1 | 0.86 (2) | 2.12 (2) | 2.6169 (16) | 115.9 (16) |
| O1—H1⋯O2i | 0.86 (2) | 2.18 (2) | 2.9039 (14) | 141.5 (19) |
| N2—H2⋯O2ii | 0.916 (18) | 2.199 (19) | 3.0579 (15) | 155.9 (15) |
| C3—H3c⋯Cg1iii | 0.98 | 2.92 | 3.5830 (16) | 126 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was financially supported by the Ministry of Science Technology and Innovation (MOSTI) under a research grant (No. 06–01-09-SF0046). The authors would like to thank Universiti Malaysia Sarawak (UNIMAS) for the facilities to carry out the research work. The authors also thank the University of Malaya for support of the crystallographic facility.
supplementary crystallographic information
Comment
The title compound, (I), was prepared as a potential ligand for tin (Affan et al., 2009), motivated by the wide range of biological activities displayed by organotin compounds (Gielen & Tiekink, 2005). The r.m.s. for the 13 non-hydrogen atoms comprising (I), Fig. 1, is 0.140 Å. The maximum deviations are found for the carboxylic acid-O atoms with the O1 atom being 0.292 (1) Å out of the least-squares plane and the O2 lying 0.210 (1) Å to the other side. The planarity in the molecule is readily explained in terms of an intramolecular O—H···N hydrogen bond as the hydroxy H is directed toward the centre of the molecule, Table 1. The conformation about the N1═ C2 double bond [1.2909 (16) Å] is E. In the crystal packing, the carbonyl-O2 atom accepts hydrogen bonds from both the hydroxy-O1—H and amine-H atoms, derived from different molecules, Table 1. The result is a supramolecular double layer as illustrated in Fig. 2. Layers stack along the a direction and are connected by C—H···π interactions, Fig. 3 and Table 1.
Experimental
Pyruvic acid (0.440 g, 5 mmol) was dissolved in 10 ml absolute ethanol with constant stirring. An ethanolic solution of phenylhydrazine (0.540 g, 5 mmol) was then added to the solution drop-wise. The resulting reaction mixture was refluxed for 5 h. On cooling the solution to room temperature, a light-orange powder separated, which was filtered and washed with ethanol. The powder was recrystallized from ethanol and dried in vacuo over silica gel. (M.pt. 460–462 K. Yield 0.724 g (73.8%). Anal. Calc. for C9H10N2O2: C, 60.66; H, 5.65; N, 15.72%. Found: C, 60.61; H, 5.59; N, 15.68%. FT—IR (KBr, cm-1) νmax: 3333 (m, OH), 3285 (s, NH), 1709 (m, C=O), 1595 (w, C=N), 991 (m, N—N).
Refinement
Carbon-bound H-atoms were placed in calculated positions (C–H = 0.95 to 0.98 Å) and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2–1.5Ueq(C). The O—H and N—H hydrogen atoms were freely refined; see Table 1 for bond distances.
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Fig. 2.
A view in projection down the a axis of the supramolecular double layer in (I). The O—H···O and N—H···O hydrogen bonds are shown as orange and blue dashed lines, respectively.
Fig. 3.
A view in projection down the b axis of the crystal packing in (I) showing the connection between layers via C—H···π interactions. The O—H···O and N—H···S hydrogen bonds are shown as orange and blue dashed lines, respectively, and the C—H···π contacts are shown as purple dashed lines.
Crystal data
| C9H10N2O2 | F(000) = 376 |
| Mr = 178.19 | Dx = 1.399 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2940 reflections |
| a = 7.3239 (3) Å | θ = 2.7–29.2° |
| b = 12.0837 (7) Å | µ = 0.10 mm−1 |
| c = 9.6836 (4) Å | T = 100 K |
| β = 99.119 (4)° | Block, yellow |
| V = 846.17 (7) Å3 | 0.20 × 0.15 × 0.10 mm |
| Z = 4 |
Data collection
| Agilent Supernova Dual diffractometer with an Atlas detector | 1920 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1544 reflections with I > 2σ(I) |
| Mirror | Rint = 0.042 |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.7° |
| ω scans | h = −9→9 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −11→15 |
| Tmin = 0.734, Tmax = 1.000 | l = −12→12 |
| 7879 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0516P)2 + 0.2722P] where P = (Fo2 + 2Fc2)/3 |
| 1920 reflections | (Δ/σ)max < 0.001 |
| 127 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.64494 (15) | 0.79085 (9) | 0.40334 (10) | 0.0218 (3) | |
| O2 | 0.56711 (14) | 0.78175 (8) | 0.17390 (10) | 0.0207 (3) | |
| N2 | 0.69829 (16) | 0.46664 (10) | 0.44283 (12) | 0.0175 (3) | |
| N1 | 0.68674 (15) | 0.57591 (10) | 0.41916 (11) | 0.0158 (3) | |
| C1 | 0.60689 (18) | 0.73282 (12) | 0.28486 (13) | 0.0168 (3) | |
| C2 | 0.61419 (18) | 0.61094 (12) | 0.29678 (13) | 0.0164 (3) | |
| C3 | 0.5429 (2) | 0.54090 (12) | 0.17314 (14) | 0.0196 (3) | |
| H3A | 0.6342 | 0.4838 | 0.1615 | 0.029* | |
| H3B | 0.5208 | 0.5872 | 0.0891 | 0.029* | |
| H3C | 0.4269 | 0.5057 | 0.1876 | 0.029* | |
| C4 | 0.78824 (18) | 0.42878 (12) | 0.57266 (14) | 0.0163 (3) | |
| C5 | 0.7901 (2) | 0.31539 (12) | 0.59907 (15) | 0.0205 (3) | |
| H5 | 0.7321 | 0.2656 | 0.5297 | 0.025* | |
| C6 | 0.87695 (19) | 0.27559 (13) | 0.72715 (16) | 0.0242 (4) | |
| H6 | 0.8773 | 0.1984 | 0.7455 | 0.029* | |
| C7 | 0.9634 (2) | 0.34750 (14) | 0.82876 (15) | 0.0248 (4) | |
| H7 | 1.0229 | 0.3200 | 0.9163 | 0.030* | |
| C8 | 0.96165 (19) | 0.45980 (13) | 0.80084 (15) | 0.0228 (3) | |
| H8 | 1.0207 | 0.5094 | 0.8700 | 0.027* | |
| C9 | 0.87518 (19) | 0.50122 (13) | 0.67369 (15) | 0.0193 (3) | |
| H9 | 0.8753 | 0.5785 | 0.6557 | 0.023* | |
| H1 | 0.656 (3) | 0.7447 (18) | 0.472 (2) | 0.044 (6)* | |
| H2 | 0.628 (2) | 0.4184 (16) | 0.3834 (19) | 0.032 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0340 (6) | 0.0160 (6) | 0.0142 (5) | 0.0001 (4) | −0.0003 (4) | −0.0001 (4) |
| O2 | 0.0272 (5) | 0.0187 (6) | 0.0157 (5) | 0.0014 (4) | 0.0018 (4) | 0.0027 (4) |
| N2 | 0.0218 (6) | 0.0138 (6) | 0.0157 (6) | 0.0001 (5) | −0.0007 (5) | 0.0008 (5) |
| N1 | 0.0166 (6) | 0.0149 (6) | 0.0158 (6) | 0.0009 (4) | 0.0026 (4) | 0.0007 (4) |
| C1 | 0.0175 (7) | 0.0172 (8) | 0.0153 (6) | −0.0006 (5) | 0.0014 (5) | −0.0006 (5) |
| C2 | 0.0159 (6) | 0.0180 (8) | 0.0153 (6) | −0.0003 (5) | 0.0027 (5) | 0.0006 (5) |
| C3 | 0.0240 (7) | 0.0175 (8) | 0.0162 (6) | −0.0013 (6) | 0.0002 (6) | −0.0008 (5) |
| C4 | 0.0146 (6) | 0.0195 (8) | 0.0153 (6) | 0.0022 (5) | 0.0043 (5) | 0.0032 (5) |
| C5 | 0.0209 (7) | 0.0181 (8) | 0.0223 (7) | 0.0016 (6) | 0.0024 (6) | 0.0010 (6) |
| C6 | 0.0226 (7) | 0.0211 (8) | 0.0288 (8) | 0.0042 (6) | 0.0034 (6) | 0.0088 (6) |
| C7 | 0.0195 (7) | 0.0345 (9) | 0.0194 (7) | 0.0039 (6) | 0.0005 (6) | 0.0093 (6) |
| C8 | 0.0189 (7) | 0.0302 (9) | 0.0182 (7) | −0.0008 (6) | −0.0003 (6) | 0.0014 (6) |
| C9 | 0.0188 (7) | 0.0195 (8) | 0.0196 (7) | −0.0013 (5) | 0.0025 (6) | 0.0010 (6) |
Geometric parameters (Å, °)
| O1—C1 | 1.3358 (16) | C4—C9 | 1.390 (2) |
| O1—H1 | 0.86 (2) | C4—C5 | 1.393 (2) |
| O2—C1 | 1.2205 (16) | C5—C6 | 1.3871 (19) |
| N2—N1 | 1.3405 (16) | C5—H5 | 0.9500 |
| N2—C4 | 1.4005 (17) | C6—C7 | 1.388 (2) |
| N2—H2 | 0.916 (18) | C6—H6 | 0.9500 |
| N1—C2 | 1.2909 (16) | C7—C8 | 1.383 (2) |
| C1—C2 | 1.478 (2) | C7—H7 | 0.9500 |
| C2—C3 | 1.4913 (18) | C8—C9 | 1.3858 (19) |
| C3—H3A | 0.9800 | C8—H8 | 0.9500 |
| C3—H3B | 0.9800 | C9—H9 | 0.9500 |
| C3—H3C | 0.9800 | ||
| C1—O1—H1 | 107.9 (14) | C9—C4—N2 | 121.60 (13) |
| N1—N2—C4 | 118.90 (11) | C5—C4—N2 | 118.39 (12) |
| N1—N2—H2 | 120.4 (11) | C6—C5—C4 | 119.65 (14) |
| C4—N2—H2 | 119.5 (11) | C6—C5—H5 | 120.2 |
| C2—N1—N2 | 119.05 (12) | C4—C5—H5 | 120.2 |
| O2—C1—O1 | 119.34 (13) | C5—C6—C7 | 120.65 (14) |
| O2—C1—C2 | 123.52 (12) | C5—C6—H6 | 119.7 |
| O1—C1—C2 | 117.13 (11) | C7—C6—H6 | 119.7 |
| N1—C2—C1 | 113.77 (12) | C8—C7—C6 | 119.11 (13) |
| N1—C2—C3 | 126.28 (13) | C8—C7—H7 | 120.4 |
| C1—C2—C3 | 119.95 (11) | C6—C7—H7 | 120.4 |
| C2—C3—H3A | 109.5 | C7—C8—C9 | 121.11 (14) |
| C2—C3—H3B | 109.5 | C7—C8—H8 | 119.4 |
| H3A—C3—H3B | 109.5 | C9—C8—H8 | 119.4 |
| C2—C3—H3C | 109.5 | C8—C9—C4 | 119.46 (14) |
| H3A—C3—H3C | 109.5 | C8—C9—H9 | 120.3 |
| H3B—C3—H3C | 109.5 | C4—C9—H9 | 120.3 |
| C9—C4—C5 | 120.01 (13) | ||
| C4—N2—N1—C2 | 175.73 (12) | C9—C4—C5—C6 | 0.8 (2) |
| N2—N1—C2—C1 | 179.08 (12) | N2—C4—C5—C6 | −179.52 (13) |
| N2—N1—C2—C3 | −1.5 (2) | C4—C5—C6—C7 | −0.6 (2) |
| O2—C1—C2—N1 | 169.64 (13) | C5—C6—C7—C8 | 0.1 (2) |
| O1—C1—C2—N1 | −10.90 (18) | C6—C7—C8—C9 | 0.1 (2) |
| O2—C1—C2—C3 | −9.8 (2) | C7—C8—C9—C4 | 0.2 (2) |
| O1—C1—C2—C3 | 169.66 (12) | C5—C4—C9—C8 | −0.6 (2) |
| N1—N2—C4—C9 | −4.0 (2) | N2—C4—C9—C8 | 179.71 (13) |
| N1—N2—C4—C5 | 176.34 (12) |
Hydrogen-bond geometry (Å, °)
| Cg1 is the centroid of the C4–C9 ring. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N1 | 0.86 (2) | 2.12 (2) | 2.6169 (16) | 115.9 (16) |
| O1—H1···O2i | 0.86 (2) | 2.18 (2) | 2.9039 (14) | 141.5 (19) |
| N2—H2···O2ii | 0.916 (18) | 2.199 (19) | 3.0579 (15) | 155.9 (15) |
| C3—H3c···Cg1iii | 0.98 | 2.92 | 3.5830 (16) | 126 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5024).
References
- Affan, M. A., Wan Foo, S., Jusoh, I., Hanapi, S. & Tiekink, E. R. T. (2009). Inorg. Chim. Acta, 362, 5031–5037.
- Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Gielen, M. & Tiekink, E. R. T. (2005). Metallotherapeutic Drugs and Metal-Based Diagnostic Agents: The Use of Metals in Medicine, edited by M. Gielen & E. R. T. Tiekink, pp. 421–439. Chichester: John Wiley & Sons.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013717/hg5024sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013717/hg5024Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



