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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 13;67(Pt 5):m566. doi: 10.1107/S1600536811012001

Dicyanido[tris­(2-pyridyl­meth­yl)amine]­cobalt(III) hexa­fluorido­phosphate

Fan Yu a,*, Bao Li b
PMCID: PMC3089135  PMID: 21754296

Abstract

In the title complex, [Co(CN)2(C18H18N4)]PF6, the CoIII atom together with one of the pyridyl rings and two cyanide anions are located on a mirror plane, while the P atom is located on an inversion centre. The CoIII atom exhibits an octa­hedral geometry, coordinated by four N atoms from the tris­(2-pyridyl­meth­yl)amine ligand with an average Co—N distance of 1.953 (2) Å, and two cyanide C atoms with an average Co—C distance of 1.895 (2) Å. The crystal packing is stabilized by inter­molecular C—H⋯N and C—H⋯F inter­actions.

Related literature

For related structures, see: Guo et al. (2007 ▶), Liu et al. (2010 ▶).graphic file with name e-67-0m566-scheme1.jpg

Experimental

Crystal data

  • [Co(CN)2(C18H18N4)]PF6

  • M r = 546.30

  • Orthorhombic, Inline graphic

  • a = 10.703 (2) Å

  • b = 13.472 (3) Å

  • c = 15.151 (3) Å

  • V = 2184.7 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.93 mm−1

  • T = 293 K

  • 0.40 × 0.30 × 0.25 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.722, T max = 0.792

  • 26914 measured reflections

  • 2173 independent reflections

  • 2053 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.025

  • wR(F 2) = 0.070

  • S = 1.08

  • 2173 reflections

  • 176 parameters

  • H-atom parameters constrained

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012001/vm2083sup1.cif

e-67-0m566-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012001/vm2083Isup2.hkl

e-67-0m566-Isup2.hkl (109.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C3—H3A⋯N4i 0.93 2.60 3.339 (3) 137
C6—H6A⋯F3i 0.96 2.29 3.234 (2) 169
C7—H7A⋯F2ii 0.93 2.44 3.128 (3) 131
C9—H9A⋯N5iii 0.93 2.57 3.410 (2) 151

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

Jianghan University and Huazhong University of Science and Technology are thanked for their generous financial support and for a start-up grant.

supplementary crystallographic information

Comment

Transitional metal-cyanide systems have been extensively investigated due to their versatile structure and physical properties, especially in the field of molecular-based magnets. A large number of cyanide-bridged heterobimetallic or homometallic coordination complexes that exhibit excellent magnetic properties has been constructed by using the hexacyanoferrate(III) and hexacyanocobaltate(III) anions as templates (Liu et al., 2010). In constrast, complexes constructed by using the octacyanotungsten(IV) anion are rare. In an attempt to synthesize new complexes, we decided to use octacyanotungsten(IV) anions as template and new compounds containing cyanides have been obtained. The octacyanotungsten(IV) anion was not coordinated to Co atom via cyanide bridges, but acts as source of in situ cyanide generation.

In the title compound, the cobalt(III) centers are coordinated by two cyanides and tris(2-pyridylmethyl)amine (Fig. 1). Each cobalt(III) ion is coordinated by four N atoms with average Co—N distance of 1.957 (2) Å and two C atoms with average Co—C distance of 1.895 (2) Å in a rigid octahedral geometry, in accordance with those observed in other [Co(N)4(CN)2]- units (Guo et al., 2007). The dihedral angle of two types of pyridyl rings is about 80.17°, indicating the nearly perpendicular occupation of these pyridyl rings. The crystal packing is stabilized by C—H···N and C—H···F hydrogen bonding interactons (Table 1, Fig. 2).

Experimental

0.01 mmol K4W(CN)8 in 5 ml H2O was added in a tube, and 3 ml H2O was layered on as a buffer. A solution containing 0.1 mmol CoCl2.6H2O, 0.11 mmol tris(2-pyridylmethyl)amine and 0.11 mmol KPF6 in 5 mL acetone and 1 ml H2O was stirred for 30 min and layered on top of the previous solution. After half a year, yellow crystals were obtained.

Refinement

All H atoms were placed geometrically with C—H = 0.93 (aromatic) or 0.96-0.97 Å (CH2) , and refined using a riding atom model with their isotropic displacement factors, Uĩso fixed at 1.2 time the Ueq of the parent C atom.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound showing atomic numbering and 30% probability displacement ellipsoids.Symmetry codes: (i) x,y,-z + 1/2; (ii) x,-y + 1/2,-z.

Fig. 2.

Fig. 2.

The packing of title compound, viewed down the b axis. Symmetry codes: (i) x,y,-z + 1/2; (ii) x,-y + 1/2,-z.

Crystal data

[Co(CN)2(C18H18N4)]PF6 F(000) = 1104
Mr = 546.30 Dx = 1.658 Mg m−3Dm = 1.658 Mg m−3Dm measured by not measured
Orthorhombic, Pbcm Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2c 2b Cell parameters from 27644 reflections
a = 10.703 (2) Å θ = 6.1–54.9°
b = 13.472 (3) Å µ = 0.93 mm−1
c = 15.151 (3) Å T = 293 K
V = 2184.7 (8) Å3 Block, yellow
Z = 4 0.40 × 0.30 × 0.25 mm

Data collection

Bruker SMART APEX diffractometer 2173 independent reflections
Radiation source: fine-focus sealed tube 2053 reflections with I > 2σ(I)
graphite Rint = 0.028
Detector resolution: 0 pixels mm-1 θmax = 26.0°, θmin = 3.3°
ω scans h = −13→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) k = −16→14
Tmin = 0.722, Tmax = 0.792 l = −18→18
26914 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.070 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.043P)2 + 0.5717P] where P = (Fo2 + 2Fc2)/3
2173 reflections (Δ/σ)max < 0.001
176 parameters Δρmax = 0.27 e Å−3
0 restraints Δρmin = −0.24 e Å−3
1.234 constraints

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.82856 (2) 0.057628 (17) 0.2500 0.02656 (10)
N1 0.64937 (15) 0.02901 (13) 0.2500 0.0308 (3)
N2 0.82831 (10) 0.04135 (9) 0.37718 (8) 0.0326 (3)
N3 0.85307 (16) −0.08775 (13) 0.2500 0.0328 (4)
N4 0.8016 (2) 0.28241 (14) 0.2500 0.0499 (5)
N5 1.10402 (19) 0.11315 (17) 0.2500 0.0508 (5)
C1 0.5562 (2) 0.09626 (16) 0.2500 0.0412 (5)
H1A 0.5761 0.1634 0.2500 0.049*
C2 0.4321 (2) 0.0686 (2) 0.2500 0.0501 (6)
H2A 0.3694 0.1163 0.2500 0.060*
C3 0.4029 (2) −0.0304 (2) 0.2500 0.0503 (6)
H3A 0.3199 −0.0507 0.2500 0.060*
C4 0.4976 (2) −0.09968 (17) 0.2500 0.0470 (5)
H4A 0.4792 −0.1671 0.2500 0.056*
P1 0.43435 (6) 0.2500 0.0000 0.04841 (17)
C6 0.7279 (2) −0.13885 (15) 0.2500 0.0408 (5)
H6A 0.7219 −0.1806 0.3012 0.049*
F2 0.54077 (17) 0.23947 (14) 0.07289 (13) 0.1109 (6)
F1 0.43287 (15) 0.13526 (10) −0.01878 (13) 0.0969 (5)
C13 0.80941 (18) 0.19751 (15) 0.2500 0.0333 (4)
C8 0.76782 (18) 0.07851 (15) 0.52469 (11) 0.0524 (4)
H8A 0.7322 0.1225 0.5647 0.063*
F3 0.32765 (16) 0.23608 (13) 0.07209 (10) 0.0978 (5)
C10 0.86385 (17) −0.07628 (14) 0.49189 (11) 0.0447 (4)
H10A 0.8939 −0.1378 0.5098 0.054*
C7 0.77754 (15) 0.10373 (12) 0.43633 (10) 0.0417 (3)
H7A 0.7483 0.1652 0.4175 0.050*
C12 0.92406 (15) −0.11166 (11) 0.33220 (10) 0.0400 (3)
H12A 1.0122 −0.0977 0.3241 0.048*
H12B 0.9146 −0.1813 0.3469 0.048*
C9 0.81121 (17) −0.01197 (16) 0.55256 (11) 0.0510 (4)
H9A 0.8053 −0.0299 0.6117 0.061*
C14 1.0012 (2) 0.08893 (15) 0.2500 0.0340 (4)
C11 0.87139 (14) −0.04806 (10) 0.40424 (10) 0.0357 (3)
C5 0.6211 (2) −0.06763 (14) 0.2500 0.0336 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.02638 (16) 0.02409 (15) 0.02921 (15) 0.00029 (9) 0.000 0.000
N1 0.0296 (8) 0.0301 (8) 0.0326 (8) −0.0016 (6) 0.000 0.000
N2 0.0312 (6) 0.0339 (6) 0.0328 (6) −0.0008 (4) −0.0014 (4) −0.0005 (5)
N3 0.0355 (9) 0.0281 (8) 0.0348 (8) 0.0041 (7) 0.000 0.000
N4 0.0456 (11) 0.0296 (9) 0.0746 (14) −0.0006 (8) 0.000 0.000
N5 0.0318 (10) 0.0664 (13) 0.0541 (11) −0.0040 (9) 0.000 0.000
C1 0.0311 (10) 0.0343 (10) 0.0583 (13) 0.0002 (8) 0.000 0.000
C2 0.0318 (12) 0.0533 (14) 0.0654 (16) 0.0017 (9) 0.000 0.000
C3 0.0301 (11) 0.0612 (14) 0.0595 (14) −0.0113 (10) 0.000 0.000
C4 0.0449 (13) 0.0394 (11) 0.0566 (13) −0.0155 (10) 0.000 0.000
P1 0.0461 (3) 0.0473 (3) 0.0519 (3) 0.000 0.000 −0.0053 (3)
C6 0.0452 (12) 0.0269 (9) 0.0505 (12) −0.0053 (8) 0.000 0.000
F2 0.0979 (12) 0.1154 (13) 0.1194 (13) 0.0305 (10) −0.0483 (10) 0.0004 (10)
F1 0.0994 (11) 0.0502 (7) 0.1411 (14) −0.0045 (7) 0.0406 (10) −0.0180 (8)
C13 0.0278 (9) 0.0317 (10) 0.0403 (10) −0.0021 (7) 0.000 0.000
C8 0.0529 (10) 0.0681 (11) 0.0362 (8) 0.0019 (9) 0.0042 (7) −0.0091 (8)
F3 0.0994 (12) 0.1130 (13) 0.0809 (10) −0.0082 (9) 0.0396 (8) −0.0240 (9)
C10 0.0443 (8) 0.0509 (9) 0.0389 (8) −0.0040 (7) −0.0058 (7) 0.0106 (7)
C7 0.0447 (9) 0.0440 (8) 0.0363 (7) 0.0040 (6) 0.0014 (6) −0.0046 (6)
C12 0.0448 (8) 0.0345 (7) 0.0409 (8) 0.0085 (6) −0.0051 (6) 0.0058 (6)
C9 0.0497 (9) 0.0721 (12) 0.0314 (7) −0.0062 (8) 0.0000 (7) 0.0057 (8)
C14 0.0330 (11) 0.0348 (9) 0.0341 (9) 0.0025 (8) 0.000 0.000
C11 0.0330 (7) 0.0379 (7) 0.0361 (7) −0.0021 (6) −0.0041 (6) 0.0044 (6)
C5 0.0383 (11) 0.0328 (10) 0.0296 (9) −0.0057 (8) 0.000 0.000

Geometric parameters (Å, °)

Co1—C14 1.895 (2) C4—C5 1.390 (3)
Co1—C13 1.896 (2) C4—H4A 0.9300
Co1—N2i 1.9393 (13) P1—F1ii 1.5719 (14)
Co1—N2 1.9393 (13) P1—F1 1.5719 (14)
Co1—N1 1.9563 (17) P1—F3ii 1.5913 (15)
Co1—N3 1.9760 (18) P1—F3 1.5913 (15)
N1—C5 1.337 (3) P1—F2 1.5928 (16)
N1—C1 1.347 (3) P1—F2ii 1.5928 (16)
N2—C7 1.343 (2) C6—C5 1.492 (3)
N2—C11 1.3534 (19) C6—H6A 0.9600
N3—C12 1.4940 (17) C8—C9 1.371 (3)
N3—C12i 1.4940 (17) C8—C7 1.385 (2)
N3—C6 1.507 (3) C8—H8A 0.9300
N4—C13 1.147 (3) C10—C9 1.383 (3)
N5—C14 1.148 (3) C10—C11 1.384 (2)
C1—C2 1.379 (3) C10—H10A 0.9300
C1—H1A 0.9300 C7—H7A 0.9300
C2—C3 1.370 (4) C12—C11 1.498 (2)
C2—H2A 0.9300 C12—H12A 0.9700
C3—C4 1.378 (4) C12—H12B 0.9700
C3—H3A 0.9300 C9—H9A 0.9300
C14—Co1—C13 83.35 (8) F1ii—P1—F3 89.11 (10)
C14—Co1—N2i 91.52 (3) F1—P1—F3 90.06 (9)
C13—Co1—N2i 96.45 (4) F3ii—P1—F3 88.28 (14)
C14—Co1—N2 91.52 (3) F1ii—P1—F2 88.24 (9)
C13—Co1—N2 96.45 (4) F1—P1—F2 92.58 (10)
N2i—Co1—N2 167.01 (7) F3ii—P1—F2 178.30 (9)
C14—Co1—N1 178.51 (8) F3—P1—F2 91.54 (11)
C13—Co1—N1 95.16 (8) F1ii—P1—F2ii 92.58 (10)
N2i—Co1—N1 88.64 (3) F1—P1—F2ii 88.24 (9)
N2—Co1—N1 88.64 (3) F3ii—P1—F2ii 91.54 (11)
C14—Co1—N3 95.23 (8) F3—P1—F2ii 178.30 (9)
C13—Co1—N3 178.58 (8) F2—P1—F2ii 88.69 (16)
N2i—Co1—N3 83.58 (4) C5—C6—N3 112.79 (17)
N2—Co1—N3 83.58 (4) C5—C6—H6A 109.0
N1—Co1—N3 86.26 (7) N3—C6—H6A 109.0
C5—N1—C1 119.17 (18) N4—C13—Co1 177.95 (19)
C5—N1—Co1 114.45 (14) C9—C8—C7 119.36 (16)
C1—N1—Co1 126.38 (15) C9—C8—H8A 120.3
C7—N2—C11 119.50 (13) C7—C8—H8A 120.3
C7—N2—Co1 126.35 (11) C9—C10—C11 119.30 (16)
C11—N2—Co1 113.65 (10) C9—C10—H10A 120.3
C12—N3—C12i 112.94 (16) C11—C10—H10A 120.3
C12—N3—C6 110.72 (10) N2—C7—C8 121.45 (16)
C12i—N3—C6 110.72 (10) N2—C7—H7A 119.3
C12—N3—Co1 106.33 (9) C8—C7—H7A 119.3
C12i—N3—Co1 106.33 (9) N3—C12—C11 107.02 (12)
C6—N3—Co1 109.56 (12) N3—C12—H12A 110.3
N1—C1—C2 122.0 (2) C11—C12—H12A 110.3
N1—C1—H1A 119.0 N3—C12—H12B 110.3
C2—C1—H1A 119.0 C11—C12—H12B 110.3
C3—C2—C1 118.9 (2) H12A—C12—H12B 108.6
C3—C2—H2A 120.6 C8—C9—C10 119.36 (15)
C1—C2—H2A 120.6 C8—C9—H9A 120.3
C2—C3—C4 119.4 (2) C10—C9—H9A 120.3
C2—C3—H3A 120.3 N5—C14—Co1 176.3 (2)
C4—C3—H3A 120.3 N2—C11—C10 121.03 (15)
C3—C4—C5 119.3 (2) N2—C11—C12 114.62 (13)
C3—C4—H4A 120.4 C10—C11—C12 124.34 (14)
C5—C4—H4A 120.4 N1—C5—C4 121.2 (2)
F1ii—P1—F1 178.85 (13) N1—C5—C6 116.95 (18)
F1ii—P1—F3ii 90.06 (9) C4—C5—C6 121.88 (19)
F1—P1—F3ii 89.11 (10)
C14—Co1—N1—C5 180.0 C2—C3—C4—C5 0.0
C13—Co1—N1—C5 180.0 C12—N3—C6—C5 116.97 (11)
N2i—Co1—N1—C5 83.65 (4) C12i—N3—C6—C5 −116.97 (11)
N2—Co1—N1—C5 −83.65 (4) Co1—N3—C6—C5 0.0
N3—Co1—N1—C5 0.0 C14—Co1—C13—N4 0.0
C14—Co1—N1—C1 0.0 N2i—Co1—C13—N4 −90.79 (3)
C13—Co1—N1—C1 0.0 N2—Co1—C13—N4 90.79 (3)
N2i—Co1—N1—C1 −96.35 (4) N1—Co1—C13—N4 180.0
N2—Co1—N1—C1 96.35 (4) N3—Co1—C13—N4 0.0
N3—Co1—N1—C1 180.0 C11—N2—C7—C8 −0.2 (2)
C14—Co1—N2—C7 107.30 (14) Co1—N2—C7—C8 171.16 (13)
C13—Co1—N2—C7 23.82 (14) C9—C8—C7—N2 0.2 (3)
N2i—Co1—N2—C7 −149.2 (2) C12i—N3—C12—C11 156.60 (11)
N1—Co1—N2—C7 −71.22 (14) C6—N3—C12—C11 −78.58 (16)
N3—Co1—N2—C7 −157.61 (14) Co1—N3—C12—C11 40.35 (14)
C14—Co1—N2—C11 −80.90 (11) C7—C8—C9—C10 0.0 (3)
C13—Co1—N2—C11 −164.38 (11) C11—C10—C9—C8 −0.1 (3)
N2i—Co1—N2—C11 22.6 (4) C13—Co1—C14—N5 0.0
N1—Co1—N2—C11 100.58 (11) N2i—Co1—C14—N5 96.31 (4)
N3—Co1—N2—C11 14.19 (11) N2—Co1—C14—N5 −96.31 (4)
C14—Co1—N3—C12 60.30 (10) N1—Co1—C14—N5 0.0
C13—Co1—N3—C12 60.30 (10) N3—Co1—C14—N5 180.0
N2i—Co1—N3—C12 151.25 (11) C7—N2—C11—C10 0.1 (2)
N2—Co1—N3—C12 −30.65 (10) Co1—N2—C11—C10 −172.35 (12)
N1—Co1—N3—C12 −119.70 (10) C7—N2—C11—C12 179.11 (14)
C14—Co1—N3—C12i −60.30 (10) Co1—N2—C11—C12 6.70 (16)
C13—Co1—N3—C12i −60.30 (10) C9—C10—C11—N2 0.1 (2)
N2i—Co1—N3—C12i 30.65 (10) C9—C10—C11—C12 −178.84 (16)
N2—Co1—N3—C12i −151.25 (11) N3—C12—C11—N2 −31.69 (18)
N1—Co1—N3—C12i 119.70 (10) N3—C12—C11—C10 147.32 (16)
C14—Co1—N3—C6 180.0 C1—N1—C5—C4 0.0
C13—Co1—N3—C6 180.0 Co1—N1—C5—C4 180.0
N2i—Co1—N3—C6 −89.05 (3) C1—N1—C5—C6 180.0
N2—Co1—N3—C6 89.05 (3) Co1—N1—C5—C6 0.0
N1—Co1—N3—C6 0.0 C3—C4—C5—N1 0.0
C5—N1—C1—C2 0.0 C3—C4—C5—C6 180.0
Co1—N1—C1—C2 180.0 N3—C6—C5—N1 0.0
N1—C1—C2—C3 0.0 N3—C6—C5—C4 180.0
C1—C2—C3—C4 0.0

Symmetry codes: (i) x, y, −z+1/2; (ii) x, −y+1/2, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C3—H3A···N4iii 0.93 2.60 3.339 (3) 137
C6—H6A···F3iii 0.96 2.29 3.234 (2) 169
C7—H7A···F2i 0.93 2.44 3.128 (3) 131
C9—H9A···N5iv 0.93 2.57 3.410 (2) 151

Symmetry codes: (iii) −x+1, y−1/2, −z+1/2; (i) x, y, −z+1/2; (iv) −x+2, −y, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2083).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012001/vm2083sup1.cif

e-67-0m566-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012001/vm2083Isup2.hkl

e-67-0m566-Isup2.hkl (109.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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