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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 13;67(Pt 5):o1095. doi: 10.1107/S1600536811012669

3-[2-(6-Bromo-2-phenyl-3H-imidazo[4,5-b]pyridin-3-yl)eth­yl]-1,3-oxazolidin-2-one

Younes Ouzidan a,*, Jerry P Jasinski b, Raymond J Butcher c, James A Golen b, El Mokhtar Essassi d, Lahcen El Ammari e
PMCID: PMC3089183  PMID: 21754415

Abstract

In the title mol­ecule, C17H15BrN4O2, the fused-ring system is essentially planar, the largest deviation from the mean plane being 0.015 (2) Å, and forms dihedral angles of 37.8 (2) and 35.5 (2)° with the phenyl and oxazolidine rings, respectively. The conformation adopted by the mol­ecule is stabilized by an intra­molecular π⋯π inter­action [centroid–centroid distance = 3.855(2) Å] between oxazolidine and phenyl rings. The crystal packing features inter­molecular C—H⋯N and C—H⋯O inter­actions.

Related literature

For background to the medicinal chemistry of oxazolidin-2-ones and their application in asymmetric synthesis, see: Diekema & Jones (2000); Mukhtar & Wright (2004); Evans et al. (1993); Matsunaga et al. (2005). For similar compounds with an imidazo[4,5-b]pyridine group, see: Ouzidan et al. (2010a ,b ).graphic file with name e-67-o1095-scheme1.jpg

Experimental

Crystal data

  • C17H15BrN4O2

  • M r = 387.24

  • Monoclinic, Inline graphic

  • a = 11.3553 (6) Å

  • b = 11.5915 (5) Å

  • c = 12.2542 (8) Å

  • β = 98.685 (6)°

  • V = 1594.46 (15) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.60 mm−1

  • T = 170 K

  • 0.22 × 0.20 × 0.18 mm

Data collection

  • Oxford Diffraction XcaliburE Gemini diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) T min = 0.599, T max = 0.652

  • 7850 measured reflections

  • 3791 independent reflections

  • 2839 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.037

  • wR(F 2) = 0.091

  • S = 1.03

  • 3791 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.50 e Å−3

  • Δρmin = −0.35 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012669/gk2362sup1.cif

e-67-o1095-sup1.cif (20KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012669/gk2362Isup2.hkl

e-67-o1095-Isup2.hkl (185.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4A⋯N2i 0.95 2.61 3.544 (3) 168
C10—H10A⋯N2ii 0.99 2.55 3.261 (3) 128
C15—H15A⋯O1iii 0.95 2.53 3.423 (3) 156

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

JPJ acknowledges the NSF–MRI program (grant No. CHE1039027) for funds to purchase the X-ray diffractometer.

supplementary crystallographic information

Comment

Oxazolidin-2-ones are a very important class of heterocyclic compounds and their derivatives have attracted attention in various areas of drug development for antibacterial activity (Diekema & Jones, 2000; Mukhtar & Wright, 2004). Some oxazolidin-2-ones have been used as chiral auxiliaries in a wide range of asymmetric reactions (Evans et al.,1993; Matsunaga et al., 2005). As a continuation of our research works devoted to the development of substituted imidazo[4,5-b]pyridine derivatives (Ouzidan et al., 2010a,b), we report in this paper the synthesis of a new 2,6-disubstituted imidazo[4,5-b]pyridine possessing the oxazolidin-2-one ring (Scheme 1) by the action of bis(2-chloroethyl)amine hydrochloride on 6-bromo-2-phenyl-3H-imidazo [4,5-b]pyridine in boiling DMF.

The title molecule is shown in Fig. 1. The two cycles forming the imidazo[4,5-b]pyridine are almost planar with a maximum deviation of 0.015 (1) Å for N3 atom and form dihedral angles of 37.8 (2)° and 35.5 (2)° with the phenyl and the oxazolidine rings respectively. The oxazolidinone group is linked to the phenyl group by a weak intramolecular C-H···π interaction. The crystal structure is stabilized by two intermolecular C–H···N and C–H···O interactions as shown in Fig. 2 and Table 2.

Experimental

To 6-bromo-2-phenyl-3H-imidazo[4,5-b]pyridine (0.3 g, 1.09 mmol), potassium carbonate (0.33 g, 2.4 mmol) and tetra-n-butylammonium bromide (0.05 g, 0.1 mmol) in DMF (15 ml) was added bis(2-chloroethyl)amine hydrochloride (0.23 g, 1.31 mmol). The mixture was heated for 48 h. After the completion of the reaction (as monitored by TLC), the inorganic salt was filtered and the solvent was removed under reduced pressure. The residue was purified by column chromatography on silica gel by using (ethanol/ethyl acetate: 1/4) as eluent. The product was recrystallized from ethanol to furnish colourless crystals (m.p. 454 K).

Refinement

All H atoms were located in a difference map. They were refined in a riding model approximation with C—H = 0.95 -0.99 Å and Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

: Molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are represented as small circles.

Fig. 2.

Fig. 2.

: Partial packing view showing the C—H···O and C—H···N interactions (dashed lines).

Crystal data

C17H15BrN4O2 F(000) = 784
Mr = 387.24 Dx = 1.613 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 3008 reflections
a = 11.3553 (6) Å θ = 3.5–32.3°
b = 11.5915 (5) Å µ = 2.60 mm1
c = 12.2542 (8) Å T = 170 K
β = 98.685 (6)° Block, colourless
V = 1594.46 (15) Å3 0.22 × 0.20 × 0.18 mm
Z = 4

Data collection

Oxford Diffraction XcaliburE Gemini diffractometer 3791 independent reflections
Radiation source: Enhance (Mo) X-ray Source 2839 reflections with I > 2σ(I)
graphite Rint = 0.028
Detector resolution: 16.1500 pixels mm-1 θmax = 27.9°, θmin = 3.5°
ω scans h = −9→14
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) k = −15→6
Tmin = 0.599, Tmax = 0.652 l = −15→16
7850 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037 H-atom parameters constrained
wR(F2) = 0.091 w = 1/[σ2(Fo2) + (0.0373P)2 + 0.4211P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max = 0.001
3791 reflections Δρmax = 0.50 e Å3
218 parameters Δρmin = −0.35 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0047 (7)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.83535 (2) 0.94591 (2) 0.34797 (3) 0.05968 (13)
O1 0.28122 (17) 0.80153 (15) 0.18265 (18) 0.0643 (6)
O2 0.09323 (15) 0.76454 (14) 0.20646 (16) 0.0521 (5)
N1 0.61867 (17) 0.66117 (16) 0.33964 (18) 0.0444 (5)
N2 0.42350 (16) 0.82558 (14) 0.48010 (15) 0.0331 (4)
N3 0.43353 (16) 0.64555 (14) 0.41210 (15) 0.0341 (4)
N4 0.22330 (16) 0.62233 (15) 0.23253 (16) 0.0380 (4)
C1 0.53419 (19) 0.70349 (17) 0.39157 (18) 0.0336 (5)
C2 0.7057 (2) 0.7361 (2) 0.3310 (2) 0.0476 (6)
H2A 0.7694 0.7119 0.2943 0.057*
C3 0.7086 (2) 0.84809 (19) 0.3727 (2) 0.0386 (5)
C4 0.61915 (19) 0.89053 (18) 0.42593 (18) 0.0347 (5)
H4A 0.6204 0.9668 0.4544 0.042*
C5 0.52729 (19) 0.81425 (17) 0.43494 (18) 0.0313 (5)
C6 0.37023 (19) 0.72409 (17) 0.46453 (17) 0.0314 (5)
C7 0.3943 (2) 0.53819 (17) 0.3543 (2) 0.0397 (5)
H7A 0.3378 0.4977 0.3952 0.048*
H7B 0.4640 0.4872 0.3526 0.048*
C8 0.3343 (2) 0.56137 (19) 0.2369 (2) 0.0427 (6)
H8A 0.3888 0.6072 0.1981 0.051*
H8B 0.3195 0.4870 0.1975 0.051*
C9 0.2077 (2) 0.7339 (2) 0.2053 (2) 0.0422 (6)
C10 0.0290 (2) 0.6685 (2) 0.2428 (2) 0.0473 (6)
H10A −0.0444 0.6533 0.1900 0.057*
H10B 0.0066 0.6841 0.3164 0.057*
C11 0.1133 (2) 0.5666 (2) 0.2479 (2) 0.0494 (6)
H11A 0.1207 0.5270 0.3201 0.059*
H11B 0.0873 0.5104 0.1882 0.059*
C12 0.25728 (19) 0.69848 (18) 0.50368 (17) 0.0331 (5)
C13 0.2346 (2) 0.5929 (2) 0.5501 (2) 0.0491 (6)
H13A 0.2927 0.5333 0.5559 0.059*
C14 0.1272 (3) 0.5745 (2) 0.5880 (2) 0.0582 (7)
H14A 0.1116 0.5019 0.6188 0.070*
C15 0.0434 (2) 0.6598 (3) 0.5815 (2) 0.0572 (7)
H15A −0.0304 0.6462 0.6069 0.069*
C16 0.0661 (2) 0.7651 (2) 0.5383 (2) 0.0511 (6)
H16A 0.0085 0.8249 0.5350 0.061*
C17 0.1725 (2) 0.7849 (2) 0.49934 (19) 0.0407 (5)
H17A 0.1875 0.8581 0.4695 0.049*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.04820 (18) 0.05086 (18) 0.0845 (3) −0.01581 (12) 0.02468 (15) −0.00566 (14)
O1 0.0624 (12) 0.0360 (9) 0.0993 (16) −0.0107 (9) 0.0285 (11) 0.0095 (10)
O2 0.0458 (10) 0.0376 (9) 0.0730 (13) 0.0032 (8) 0.0094 (9) 0.0075 (8)
N1 0.0396 (11) 0.0275 (9) 0.0690 (14) 0.0033 (8) 0.0182 (10) −0.0068 (9)
N2 0.0361 (10) 0.0268 (9) 0.0377 (10) −0.0006 (8) 0.0093 (8) −0.0039 (7)
N3 0.0339 (10) 0.0215 (8) 0.0468 (11) −0.0001 (7) 0.0063 (8) −0.0022 (8)
N4 0.0378 (11) 0.0287 (9) 0.0472 (12) −0.0055 (8) 0.0061 (9) 0.0012 (8)
C1 0.0321 (11) 0.0243 (10) 0.0440 (13) 0.0016 (9) 0.0038 (9) 0.0011 (9)
C2 0.0388 (13) 0.0367 (12) 0.0708 (18) 0.0047 (11) 0.0200 (12) −0.0055 (12)
C3 0.0328 (12) 0.0334 (11) 0.0498 (14) −0.0021 (9) 0.0071 (10) 0.0032 (10)
C4 0.0375 (12) 0.0246 (10) 0.0412 (13) −0.0019 (9) 0.0033 (9) −0.0021 (9)
C5 0.0345 (11) 0.0241 (10) 0.0349 (12) 0.0018 (8) 0.0039 (9) 0.0000 (8)
C6 0.0333 (11) 0.0263 (10) 0.0342 (12) 0.0024 (9) 0.0034 (9) 0.0015 (9)
C7 0.0419 (13) 0.0184 (10) 0.0593 (16) 0.0013 (9) 0.0094 (11) −0.0036 (9)
C8 0.0491 (14) 0.0297 (11) 0.0517 (15) −0.0020 (10) 0.0154 (11) −0.0099 (10)
C9 0.0505 (15) 0.0314 (12) 0.0450 (14) −0.0046 (11) 0.0084 (11) −0.0009 (10)
C10 0.0428 (14) 0.0531 (15) 0.0459 (15) −0.0086 (12) 0.0063 (11) 0.0027 (12)
C11 0.0421 (14) 0.0404 (14) 0.0644 (18) −0.0132 (11) 0.0037 (12) 0.0041 (12)
C12 0.0341 (11) 0.0336 (11) 0.0319 (12) −0.0022 (9) 0.0057 (9) −0.0017 (9)
C13 0.0509 (15) 0.0385 (13) 0.0595 (17) 0.0001 (11) 0.0140 (12) 0.0078 (12)
C14 0.0626 (18) 0.0510 (16) 0.0657 (19) −0.0159 (14) 0.0248 (15) 0.0080 (13)
C15 0.0475 (16) 0.0679 (18) 0.0607 (18) −0.0146 (14) 0.0228 (13) −0.0063 (14)
C16 0.0446 (14) 0.0599 (16) 0.0514 (16) 0.0073 (13) 0.0152 (12) −0.0050 (13)
C17 0.0453 (13) 0.0374 (12) 0.0418 (13) 0.0017 (10) 0.0139 (10) −0.0003 (10)

Geometric parameters (Å, °)

Br1—C3 1.892 (2) C7—C8 1.520 (4)
O1—C9 1.208 (3) C7—H7A 0.9900
O2—C9 1.349 (3) C7—H7B 0.9900
O2—C10 1.438 (3) C8—H8A 0.9900
N1—C1 1.323 (3) C8—H8B 0.9900
N1—C2 1.332 (3) C10—C11 1.516 (4)
N2—C6 1.323 (3) C10—H10A 0.9900
N2—C5 1.382 (3) C10—H10B 0.9900
N3—C6 1.378 (3) C11—H11A 0.9900
N3—C1 1.381 (3) C11—H11B 0.9900
N3—C7 1.467 (3) C12—C17 1.385 (3)
N4—C9 1.340 (3) C12—C13 1.390 (3)
N4—C8 1.439 (3) C13—C14 1.385 (4)
N4—C11 1.443 (3) C13—H13A 0.9500
C1—C5 1.396 (3) C14—C15 1.366 (4)
C2—C3 1.393 (3) C14—H14A 0.9500
C2—H2A 0.9500 C15—C16 1.370 (4)
C3—C4 1.378 (3) C15—H15A 0.9500
C4—C5 1.385 (3) C16—C17 1.383 (3)
C4—H4A 0.9500 C16—H16A 0.9500
C6—C12 1.466 (3) C17—H17A 0.9500
C9—O2—C10 109.50 (18) N4—C8—H8B 109.0
C1—N1—C2 113.39 (19) C7—C8—H8B 109.0
C6—N2—C5 104.87 (17) H8A—C8—H8B 107.8
C6—N3—C1 105.55 (16) O1—C9—N4 127.8 (2)
C6—N3—C7 130.08 (18) O1—C9—O2 122.1 (2)
C1—N3—C7 121.58 (18) N4—C9—O2 110.1 (2)
C9—N4—C8 124.4 (2) O2—C10—C11 105.60 (19)
C9—N4—C11 112.3 (2) O2—C10—H10A 110.6
C8—N4—C11 123.08 (18) C11—C10—H10A 110.6
N1—C1—N3 125.98 (19) O2—C10—H10B 110.6
N1—C1—C5 127.6 (2) C11—C10—H10B 110.6
N3—C1—C5 106.39 (18) H10A—C10—H10B 108.8
N1—C2—C3 123.7 (2) N4—C11—C10 101.52 (18)
N1—C2—H2A 118.1 N4—C11—H11A 111.5
C3—C2—H2A 118.1 C10—C11—H11A 111.5
C4—C3—C2 121.8 (2) N4—C11—H11B 111.5
C4—C3—Br1 119.65 (16) C10—C11—H11B 111.5
C2—C3—Br1 118.43 (17) H11A—C11—H11B 109.3
C3—C4—C5 115.34 (19) C17—C12—C13 118.8 (2)
C3—C4—H4A 122.3 C17—C12—C6 118.60 (19)
C5—C4—H4A 122.3 C13—C12—C6 122.5 (2)
N2—C5—C4 132.04 (18) C14—C13—C12 119.9 (2)
N2—C5—C1 109.89 (18) C14—C13—H13A 120.0
C4—C5—C1 118.07 (19) C12—C13—H13A 120.0
N2—C6—N3 113.29 (18) C15—C14—C13 120.7 (2)
N2—C6—C12 122.43 (19) C15—C14—H14A 119.7
N3—C6—C12 124.24 (18) C13—C14—H14A 119.7
N3—C7—C8 111.52 (17) C14—C15—C16 119.8 (2)
N3—C7—H7A 109.3 C14—C15—H15A 120.1
C8—C7—H7A 109.3 C16—C15—H15A 120.1
N3—C7—H7B 109.3 C15—C16—C17 120.4 (2)
C8—C7—H7B 109.3 C15—C16—H16A 119.8
H7A—C7—H7B 108.0 C17—C16—H16A 119.8
N4—C8—C7 112.74 (19) C16—C17—C12 120.3 (2)
N4—C8—H8A 109.0 C16—C17—H17A 119.8
C7—C8—H8A 109.0 C12—C17—H17A 119.8
C2—N1—C1—N3 179.8 (2) C1—N3—C7—C8 −76.4 (3)
C2—N1—C1—C5 0.7 (4) C9—N4—C8—C7 106.1 (3)
C6—N3—C1—N1 −178.2 (2) C11—N4—C8—C7 −79.5 (3)
C7—N3—C1—N1 −15.3 (3) N3—C7—C8—N4 −66.7 (2)
C6—N3—C1—C5 1.1 (2) C8—N4—C9—O1 −1.6 (4)
C7—N3—C1—C5 163.93 (19) C11—N4—C9—O1 −176.5 (3)
C1—N1—C2—C3 0.3 (4) C8—N4—C9—O2 178.6 (2)
N1—C2—C3—C4 −0.7 (4) C11—N4—C9—O2 3.7 (3)
N1—C2—C3—Br1 −177.4 (2) C10—O2—C9—O1 −176.5 (2)
C2—C3—C4—C5 0.2 (3) C10—O2—C9—N4 3.3 (3)
Br1—C3—C4—C5 176.72 (16) C9—O2—C10—C11 −8.5 (3)
C6—N2—C5—C4 179.9 (2) C9—N4—C11—C10 −8.5 (3)
C6—N2—C5—C1 0.3 (2) C8—N4—C11—C10 176.5 (2)
C3—C4—C5—N2 −178.8 (2) O2—C10—C11—N4 9.8 (3)
C3—C4—C5—C1 0.8 (3) N2—C6—C12—C17 36.7 (3)
N1—C1—C5—N2 178.3 (2) N3—C6—C12—C17 −145.7 (2)
N3—C1—C5—N2 −0.9 (2) N2—C6—C12—C13 −139.9 (2)
N1—C1—C5—C4 −1.3 (4) N3—C6—C12—C13 37.7 (3)
N3—C1—C5—C4 179.46 (19) C17—C12—C13—C14 1.9 (4)
C5—N2—C6—N3 0.4 (2) C6—C12—C13—C14 178.5 (2)
C5—N2—C6—C12 178.28 (19) C12—C13—C14—C15 −0.8 (4)
C1—N3—C6—N2 −1.0 (2) C13—C14—C15—C16 −0.7 (5)
C7—N3—C6—N2 −161.8 (2) C14—C15—C16—C17 1.1 (4)
C1—N3—C6—C12 −178.78 (19) C15—C16—C17—C12 0.0 (4)
C7—N3—C6—C12 20.4 (3) C13—C12—C17—C16 −1.5 (4)
C6—N3—C7—C8 81.7 (3) C6—C12—C17—C16 −178.2 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4A···N2i 0.95 2.61 3.544 (3) 168
C10—H10A···N2ii 0.99 2.55 3.261 (3) 128
C15—H15A···O1iii 0.95 2.53 3.423 (3) 156

Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1/2, −y+3/2, z−1/2; (iii) x−1/2, −y+3/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2362).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012669/gk2362sup1.cif

e-67-o1095-sup1.cif (20KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012669/gk2362Isup2.hkl

e-67-o1095-Isup2.hkl (185.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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