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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 29;67(Pt 5):o1262–o1263. doi: 10.1107/S1600536811015455

2,4-Bis(4-fluoro­phen­yl)-2,3-dihydro-1H-1,5-benzodiazepine

Zeliha Baktır a, Mehmet Akkurt a,*, S Samshuddin b, B Narayana b, H S Yathirajan c
PMCID: PMC3089231  PMID: 21754550

Abstract

In the title compound, C21H16F2N2, the seven-membered 1,4-diazepine ring of the benzodiazepine ring system adopts a distorted-boat conformation. The benzene ring of this system makes dihedral angles of 18.6 (2) and 78.8 (2)° with those of two fluoro­phenyl substituents. In the crystal, inversion dimers linked by two weak C—H⋯F hydrogen bonds generate R 2 2(20) ring motifs. There are also weak N—H⋯π and C—H⋯π inter­actions.

Related literature

For related structures, see: An et al. (2007); Bibila Mayaya Bisseyou et al. (2010); Harrison et al. (2005); Peeters et al. (1997). For puckering parameters, see: Cremer & Pople (1975). For graph-set nomenclature of hydrogen bonds, see: Bernstein et al. (1995).graphic file with name e-67-o1262-scheme1.jpg

Experimental

Crystal data

  • C21H16F2N2

  • M r = 334.36

  • Monoclinic, Inline graphic

  • a = 12.9151 (4) Å

  • b = 6.0438 (3) Å

  • c = 21.2851 (7) Å

  • β = 92.147 (3)°

  • V = 1660.27 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 294 K

  • 0.20 × 0.20 × 0.20 mm

Data collection

  • Rigaku R-AXIS RAPID-S diffractometer

  • Absorption correction: refined from ΔF (XABS2; Parkin et al., 1995) T min = 0.981, T max = 0.981

  • 3413 measured reflections

  • 3413 independent reflections

  • 1226 reflections with I > 2σ(I)

Refinement

  • R[F 2 > 2σ(F 2)] = 0.061

  • wR(F 2) = 0.151

  • S = 1.04

  • 3413 reflections

  • 233 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.16 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015455/hb5848sup1.cif

e-67-o1262-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015455/hb5848Isup2.hkl

e-67-o1262-Isup2.hkl (167.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811015455/hb5848Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 and Cg2 are the centroids of the benzene rings of the two fluorophenyl substituents (C10–C15 and C16–C21, respectively).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯F1i 0.93 2.54 3.469 (6) 175
N1—H1NCg2i 0.86 (3) 2.82 (5) 3.601 (4) 151 (4)
C2—H2⋯Cg1ii 0.93 2.89 3.640 (5) 138
C11—H11⋯Cg2 0.93 2.79 3.494 (5) 134

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

ZB and MA thank the Unit of the Scientific Research Projects of Erciyes University, Turkey for the research grant FBD-10–2949, and for support of the data collection at Atatürk University, Turkey. SS and BN thank Mangalore University and the UGC SAP for financial assistance for the purchase of chemicals. HSY thanks the UOM for sabbatical leave.

supplementary crystallographic information

Comment

The crystal structures of some 1,5-benzodiazepines, viz., 2-[2-(4-methoxyphenyl)-2,3-dihydro-1H-1,5-benzodiazepin-4-yl]phenol (Bibila Mayaya Bisseyou et al., 2010), 1-(2-bromo-5-methoxyphenyl)-8-chloro-6-(2-fluorophenyl)-4H-1,2,4-triazolo[4,3-a][1,4] benzodiazepine (Harrison et al., 2005), 5-(4-fluorophenyl)-1,8-dimethyl-2-(p-toluoylaminomethyl)-2,3-dihydro-1H-1,4-benzodiazepine monohydrate (Peeters et al., 1997) and 2,4-bis(4-chlorophenyl)-2-methyl-2,3-dihydro-1H-1,5-benzodiazepine (An et al., 2007) have been reported. In continuation of this work, the title compound, (I), is synthesized and its crystal structure is reported here.

The seven-membered 1,4-diazepine ring (C1/C6–C9/N1/N2) of the benzodiazepine ring system (C1–C9/N1/N2) adopts a distorted-boat conformation [the puckering parameters (Cremer & Pople, 1975) for this eleven-membered ring system are: Q2 = 0.917 (4) Å, Q3 = 0.155 (4) Å, φ2 = 16.6 (3)° and φ3 = 92.6 (17)°] as shown in Fig. 1. The benzene ring (C1–C6) of this system forms dihedral angles of 18.6 (2)° and 78.8 (2)° with the benzene rings (C10–C15 and C16–C21) of two fluorophenyl fragments, respectively which make a dihedral angle of 62.1 (2)° with each other.

In the crystal, the two weak C—H···F hydrogen bonds link pairs of inversion-related molecules to form cyclic centrosymmetric dimers containing the R22(20) ring motif (Bernstein et al., 1995; Table 1, Fig. 2). In addtion, three C—H···π interactions are observed (Table 1).

Experimental

To a solution of 4,4'-difluoro chalcone (2.44 g, 0.01 mol) in ethanol (30 ml) a few drops of piperidine and 1, 2-diaminobenzene (1.08 g, 01 mol) were added. The mixture was heated under reflux for 10 h. The reaction mixture was cooled and poured into 50 ml ice-cold water. The precipitate was collected by filtration and purified by recrystallization from ethanol. Pale yellow blocks of (I) were grown from DMF by slow evaporation method in 66% yield (m. p.: 409 K).

Refinement

The amine and methine H atoms were placed from a Fourier map and positional parameters were constrained to ride on their parent atom by applying the N–H and C–H DFIX restraints of 0.86 (1) and 0.98 (1) Å, respectively. Their isotropic displacement parameters were set to be 1.2Ueq of the carrier atoms. The other H atoms were positioned geometrically [C—H = 0.93 and 0.97Å for aromatic and methylene H atoms, respectively] and allowed to ride on their parent C atoms, with Uiso(H) = 1.2Ueq(C). Owing to the large number of weak high-angle reflections, the ratio of observed to unique reflections is low (36%).

Figures

Fig. 1.

Fig. 1.

View of the structure of (I) with displacement ellipsoids for non-H atoms drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Packing diagram of the title compound viewed down the b axis. Hydrogen bonds are shown as dotted lines.

Crystal data

C21H16F2N2 F(000) = 696
Mr = 334.36 Dx = 1.338 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 1691 reflections
a = 12.9151 (4) Å θ = 2.5–26.3°
b = 6.0438 (3) Å µ = 0.10 mm1
c = 21.2851 (7) Å T = 294 K
β = 92.147 (3)° Block, pale yellow
V = 1660.27 (11) Å3 0.20 × 0.20 × 0.20 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID-S diffractometer 3413 independent reflections
Radiation source: Sealed Tube 1226 reflections with I > 2σ(I)
Graphite Monochromator Rint = 0.000
Detector resolution: 10.0000 pixels mm-1 θmax = 26.5°, θmin = 3.2°
dtprofit.ref scans h = −16→16
Absorption correction: part of the refinement model (ΔF) [XABS2 (Parkin et al., 1995); Cubic fit to sinθ/λ, 24 parameters] k = 0→7
Tmin = 0.981, Tmax = 0.981 l = 0→26
3413 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.P)2 + 1.2828P] where P = (Fo2 + 2Fc2)/3
3413 reflections (Δ/σ)max < 0.001
233 parameters Δρmax = 0.16 e Å3
2 restraints Δρmin = −0.18 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 0.2985 (2) 0.5093 (5) 0.38988 (13) 0.1156 (16)
F2 0.6025 (2) −0.0519 (5) 0.58369 (17) 0.1365 (18)
N1 −0.0014 (3) 0.2319 (7) 0.60658 (19) 0.0764 (17)
N2 0.1477 (3) −0.0519 (6) 0.67436 (16) 0.0667 (16)
C1 0.0446 (4) −0.0259 (7) 0.6923 (2) 0.0649 (17)
C2 0.0114 (4) −0.1609 (7) 0.7400 (2) 0.0747 (19)
C3 −0.0881 (4) −0.1566 (8) 0.7601 (2) 0.084 (2)
C4 −0.1587 (4) −0.0156 (9) 0.7299 (2) 0.090 (2)
C5 −0.1280 (4) 0.1161 (8) 0.6815 (2) 0.083 (2)
C6 −0.0273 (4) 0.1150 (7) 0.6613 (2) 0.0669 (17)
C7 0.0768 (4) 0.4074 (7) 0.6097 (2) 0.0674 (17)
C8 0.1593 (3) 0.3499 (7) 0.66113 (19) 0.0675 (17)
C9 0.2006 (3) 0.1161 (7) 0.6576 (2) 0.0635 (17)
C10 0.3074 (3) 0.0767 (7) 0.6375 (2) 0.0652 (17)
C11 0.3591 (4) 0.2231 (8) 0.6009 (2) 0.080 (2)
C12 0.4584 (4) 0.1818 (9) 0.5813 (2) 0.095 (3)
C13 0.5044 (4) −0.0120 (10) 0.6017 (3) 0.094 (3)
C14 0.4580 (4) −0.1612 (8) 0.6392 (2) 0.085 (2)
C15 0.3579 (4) −0.1181 (7) 0.6567 (2) 0.0735 (17)
C16 0.1258 (3) 0.4366 (7) 0.5464 (2) 0.0628 (17)
C17 0.1274 (3) 0.2722 (7) 0.5013 (2) 0.0710 (17)
C18 0.1843 (4) 0.2974 (9) 0.4478 (2) 0.083 (2)
C19 0.2394 (4) 0.4894 (10) 0.4416 (2) 0.081 (2)
C20 0.2382 (4) 0.6561 (8) 0.4837 (2) 0.080 (2)
C21 0.1800 (3) 0.6298 (7) 0.5363 (2) 0.0721 (17)
H1N −0.060 (2) 0.265 (10) 0.588 (2) 0.1640*
H2 0.05840 −0.25840 0.75920 0.0900*
H3 −0.10780 −0.24590 0.79310 0.1010*
H4 −0.22690 −0.01050 0.74250 0.1080*
H5 −0.17630 0.20920 0.66170 0.1000*
H7 0.048 (4) 0.552 (4) 0.621 (2) 0.1640*
H8A 0.21670 0.45220 0.65810 0.0810*
H8B 0.12960 0.37130 0.70190 0.0810*
H11 0.32650 0.35440 0.58870 0.0960*
H12 0.49230 0.28040 0.55560 0.1140*
H14 0.49250 −0.28860 0.65270 0.1020*
H15 0.32380 −0.21960 0.68140 0.0880*
H17 0.08980 0.14290 0.50700 0.0850*
H18 0.18500 0.18780 0.41710 0.0990*
H20 0.27570 0.78520 0.47760 0.0960*
H21 0.17710 0.74420 0.56540 0.0860*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.117 (3) 0.135 (3) 0.098 (2) 0.027 (2) 0.0457 (19) 0.034 (2)
F2 0.080 (2) 0.133 (3) 0.199 (4) 0.019 (2) 0.040 (2) 0.037 (3)
N1 0.065 (3) 0.093 (3) 0.071 (3) −0.011 (2) 0.002 (2) 0.014 (2)
N2 0.063 (3) 0.064 (2) 0.073 (3) 0.001 (2) 0.003 (2) 0.001 (2)
C1 0.065 (3) 0.066 (3) 0.064 (3) −0.005 (3) 0.006 (2) 0.001 (2)
C2 0.078 (4) 0.070 (3) 0.076 (3) 0.000 (3) 0.002 (3) 0.003 (3)
C3 0.088 (4) 0.088 (4) 0.077 (4) 0.001 (3) 0.020 (3) 0.014 (3)
C4 0.073 (4) 0.109 (4) 0.090 (4) 0.005 (3) 0.015 (3) 0.011 (3)
C5 0.069 (3) 0.098 (4) 0.083 (4) 0.009 (3) 0.013 (3) 0.012 (3)
C6 0.066 (3) 0.072 (3) 0.063 (3) 0.001 (3) 0.008 (2) 0.002 (2)
C7 0.069 (3) 0.069 (3) 0.064 (3) 0.004 (3) 0.000 (2) 0.004 (3)
C8 0.072 (3) 0.064 (3) 0.066 (3) −0.001 (2) −0.003 (2) −0.003 (2)
C9 0.064 (3) 0.061 (3) 0.065 (3) 0.005 (2) −0.004 (2) 0.000 (2)
C10 0.062 (3) 0.067 (3) 0.066 (3) −0.004 (3) −0.006 (2) 0.000 (2)
C11 0.062 (3) 0.082 (4) 0.096 (4) 0.001 (3) 0.000 (3) 0.015 (3)
C12 0.071 (4) 0.102 (4) 0.113 (5) 0.003 (3) 0.013 (3) 0.031 (3)
C13 0.056 (3) 0.105 (5) 0.123 (5) 0.012 (3) 0.015 (3) 0.010 (4)
C14 0.067 (4) 0.078 (4) 0.109 (4) 0.005 (3) 0.003 (3) 0.010 (3)
C15 0.069 (3) 0.067 (3) 0.084 (3) −0.007 (3) −0.002 (3) −0.001 (3)
C16 0.061 (3) 0.061 (3) 0.066 (3) 0.004 (2) −0.004 (2) 0.002 (2)
C17 0.073 (3) 0.068 (3) 0.072 (3) 0.003 (3) 0.003 (3) 0.001 (3)
C18 0.091 (4) 0.084 (4) 0.074 (4) 0.016 (3) 0.007 (3) −0.006 (3)
C19 0.078 (4) 0.099 (4) 0.067 (3) 0.020 (3) 0.017 (3) 0.023 (3)
C20 0.080 (4) 0.074 (4) 0.085 (4) 0.006 (3) 0.006 (3) 0.017 (3)
C21 0.077 (3) 0.068 (3) 0.071 (3) 0.002 (3) −0.002 (3) 0.001 (3)

Geometric parameters (Å, °)

F1—C19 1.368 (5) C14—C15 1.384 (7)
F2—C13 1.359 (6) C16—C21 1.382 (6)
N1—C6 1.413 (6) C16—C17 1.382 (6)
N1—C7 1.464 (6) C17—C18 1.387 (6)
N2—C1 1.408 (6) C18—C19 1.370 (8)
N2—C9 1.282 (6) C19—C20 1.349 (7)
N1—H1N 0.86 (3) C20—C21 1.381 (6)
C1—C6 1.406 (7) C2—H2 0.9300
C1—C2 1.383 (6) C3—H3 0.9300
C2—C3 1.370 (7) C4—H4 0.9300
C3—C4 1.388 (7) C5—H5 0.9300
C4—C5 1.372 (7) C7—H7 0.98 (3)
C5—C6 1.385 (7) C8—H8A 0.9700
C7—C8 1.539 (6) C8—H8B 0.9700
C7—C16 1.520 (6) C11—H11 0.9300
C8—C9 1.513 (6) C12—H12 0.9300
C9—C10 1.479 (6) C14—H14 0.9300
C10—C11 1.369 (6) C15—H15 0.9300
C10—C15 1.400 (6) C17—H17 0.9300
C11—C12 1.386 (7) C18—H18 0.9300
C12—C13 1.376 (8) C20—H20 0.9300
C13—C14 1.358 (8) C21—H21 0.9300
C6—N1—C7 120.6 (4) F1—C19—C18 117.4 (4)
C1—N2—C9 120.4 (4) C18—C19—C20 123.3 (4)
C7—N1—H1N 116 (4) C19—C20—C21 118.2 (5)
C6—N1—H1N 105 (3) C16—C21—C20 121.2 (4)
N2—C1—C6 123.7 (4) C1—C2—H2 119.00
C2—C1—C6 119.0 (5) C3—C2—H2 119.00
N2—C1—C2 117.1 (4) C2—C3—H3 121.00
C1—C2—C3 122.6 (4) C4—C3—H3 121.00
C2—C3—C4 118.3 (4) C3—C4—H4 120.00
C3—C4—C5 120.0 (5) C5—C4—H4 120.00
C4—C5—C6 122.1 (5) C4—C5—H5 119.00
C1—C6—C5 117.9 (4) C6—C5—H5 119.00
N1—C6—C1 121.1 (4) N1—C7—H7 113 (3)
N1—C6—C5 120.5 (4) C8—C7—H7 107 (3)
N1—C7—C16 110.7 (4) C16—C7—H7 107 (2)
N1—C7—C8 109.1 (3) C7—C8—H8A 109.00
C8—C7—C16 110.9 (4) C7—C8—H8B 109.00
C7—C8—C9 114.3 (3) C9—C8—H8A 109.00
N2—C9—C8 122.2 (4) C9—C8—H8B 109.00
C8—C9—C10 119.9 (4) H8A—C8—H8B 108.00
N2—C9—C10 117.8 (4) C10—C11—H11 119.00
C9—C10—C15 118.7 (4) C12—C11—H11 119.00
C9—C10—C11 122.7 (4) C11—C12—H12 122.00
C11—C10—C15 118.6 (4) C13—C12—H12 122.00
C10—C11—C12 122.1 (4) C13—C14—H14 121.00
C11—C12—C13 116.9 (5) C15—C14—H14 121.00
C12—C13—C14 123.8 (5) C10—C15—H15 120.00
F2—C13—C14 119.0 (5) C14—C15—H15 120.00
F2—C13—C12 117.3 (5) C16—C17—H17 119.00
C13—C14—C15 118.1 (5) C18—C17—H17 120.00
C10—C15—C14 120.7 (4) C17—C18—H18 121.00
C17—C16—C21 118.6 (4) C19—C18—H18 121.00
C7—C16—C17 123.3 (4) C19—C20—H20 121.00
C7—C16—C21 117.8 (4) C21—C20—H20 121.00
C16—C17—C18 120.9 (4) C16—C21—H21 119.00
C17—C18—C19 117.7 (4) C20—C21—H21 119.00
F1—C19—C20 119.3 (5)
C6—N1—C7—C8 32.4 (5) C7—C8—C9—N2 −74.6 (5)
C6—N1—C7—C16 154.7 (4) N2—C9—C10—C11 159.0 (4)
C7—N1—C6—C1 −67.0 (6) N2—C9—C10—C15 −21.1 (6)
C7—N1—C6—C5 120.7 (5) C8—C9—C10—C11 −24.2 (6)
C9—N2—C1—C6 40.9 (6) C8—C9—C10—C15 155.7 (4)
C9—N2—C1—C2 −144.4 (4) C9—C10—C11—C12 −178.6 (4)
C1—N2—C9—C8 5.1 (6) C15—C10—C11—C12 1.5 (7)
C1—N2—C9—C10 −178.2 (4) C9—C10—C15—C14 −179.7 (4)
N2—C1—C6—C5 176.5 (4) C11—C10—C15—C14 0.2 (7)
N2—C1—C2—C3 −177.7 (4) C10—C11—C12—C13 −1.6 (7)
C6—C1—C2—C3 −2.7 (7) C11—C12—C13—F2 −178.8 (5)
N2—C1—C6—N1 3.9 (7) C11—C12—C13—C14 0.1 (8)
C2—C1—C6—N1 −170.7 (4) F2—C13—C14—C15 −179.6 (5)
C2—C1—C6—C5 1.8 (6) C12—C13—C14—C15 1.5 (8)
C1—C2—C3—C4 2.0 (7) C13—C14—C15—C10 −1.6 (7)
C2—C3—C4—C5 −0.5 (7) C7—C16—C17—C18 −171.8 (4)
C3—C4—C5—C6 −0.3 (7) C21—C16—C17—C18 1.7 (6)
C4—C5—C6—C1 −0.4 (7) C7—C16—C21—C20 171.2 (4)
C4—C5—C6—N1 172.2 (4) C17—C16—C21—C20 −2.6 (6)
N1—C7—C8—C9 48.6 (5) C16—C17—C18—C19 0.6 (7)
N1—C7—C16—C21 163.2 (4) C17—C18—C19—F1 177.5 (4)
C8—C7—C16—C17 97.9 (5) C17—C18—C19—C20 −2.2 (8)
C8—C7—C16—C21 −75.6 (5) F1—C19—C20—C21 −178.4 (4)
N1—C7—C16—C17 −23.3 (6) C18—C19—C20—C21 1.3 (8)
C16—C7—C8—C9 −73.5 (4) C19—C20—C21—C16 1.2 (7)
C7—C8—C9—C10 108.7 (4)

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the benzene rings of the two fluorophenyl substituents (C10–C15 and C16–C21, respectively).
D—H···A D—H H···A D···A D—H···A
C5—H5···F1i 0.93 2.54 3.469 (6) 175
N1—H1N···Cg2i 0.86 (3) 2.82 (5) 3.601 (4) 151 (4)
C2—H2···Cg1ii 0.93 2.89 3.640 (5) 138
C11—H11···Cg2 0.93 2.79 3.494 (5) 134

Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1/2, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5848).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015455/hb5848sup1.cif

e-67-o1262-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015455/hb5848Isup2.hkl

e-67-o1262-Isup2.hkl (167.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811015455/hb5848Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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