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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 16;67(Pt 5):m603. doi: 10.1107/S1600536811013596

catena-Poly[[dinitratocopper(II)]-μ-4,4′′-bis­(1H-benzimidazol-1-yl)-1,1′:4′,1′′-terphen­yl]

Hong-Shi Jiang a,*, Hui Li a, Jian Wang a, Hui-Xuan Ma a, Zhe Zhang a
PMCID: PMC3089250  PMID: 21754322

Abstract

In the title one-dimensional coordination polymer, [Cu(NO3)2(C32H22N4)]n, the Cu2+ ion (site symmetry 2) is coordinated by two nitrate O atoms and two N atoms from two 4,4′-bis­(benzoimidazol-1-yl)terphenyl (L) ligands in a distorted cis-CuN2O2 square-planar coordination geometry. An alternative description of the metal coordination geometry, if long Cu—O contacts to the bonded nitrate anions are considered, is an extremely distorted cis-CuN2O4 octa­hedron. The complete L ligand is generated by crystallographic twofold symmetry and connects the metal ions into infinite chains propagating in [10Inline graphic]. The dihedral angle between the benzimidazole ring system and the adjacent benzene (B) ring is 51.12 (11)° and the dihedral angle between the B ring and the central ring is 19.45 (13)°.

Related literature

For background to benzimidazole-derived ligands in coordin­ation polymers, see: Jin et al. (2006 ▶); Li et al. (2010 ▶); Su et al. (2003 ▶).graphic file with name e-67-0m603-scheme1.jpg

Experimental

Crystal data

  • [Cu(NO3)2(C32H22N4)]

  • M r = 650.10

  • Monoclinic, Inline graphic

  • a = 14.960 (3) Å

  • b = 15.237 (3) Å

  • c = 12.139 (2) Å

  • β = 103.94 (3)°

  • V = 2685.7 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.88 mm−1

  • T = 293 K

  • 0.20 × 0.18 × 0.15 mm

Data collection

  • Rigaku Mercury CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.839, T max = 0.877

  • 13493 measured reflections

  • 2371 independent reflections

  • 2181 reflections with I > 2σ(I)

  • R int = 0.044

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.124

  • S = 1.09

  • 2371 reflections

  • 204 parameters

  • H-atom parameters constrained

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.77 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013596/hb5843sup1.cif

e-67-0m603-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013596/hb5843Isup2.hkl

e-67-0m603-Isup2.hkl (116.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Cu1—N1 1.985 (2)
Cu1—O1 2.025 (2)
Cu1—O3 2.452 (3)

Acknowledgments

We thank the College Research Program of Yuncheng University [2008114] for funding.

supplementary crystallographic information

Comment

Benzimidazole has been well used in crystal engineering, and a large number of benzimidazole-containing flexible ligands have been extensively studied (Su et al.,2003; Jin et al.,2006). However, to our knowledge, the research on benzoimidazole ligands bearing rigid spacers is still less developed (Li et al.,2010).

Single-crystal X-ray diffraction analysis reveals that the title compound (I) crystallizes in the monoclinic space group C2/c. The geometry of the Cu(II) ion is surrounded by two benzoiimidazole rings of individual L ligands and two nitrate anions, which illustrates a distorted square coordination environment (Fig. 1). Notably, as shown in Fig. 2, the four-coordinated Cu(II) center is bridged by the linear ligand L to form an infinite one-dimensional architecture.

Experimental

A mixture of CH3OH and CHCl3 (1:1, 8 ml), as a buffer layer, was carefully layered over a solution of 4,4'-Bis(benzoimidazol-1-yl)terphenyl (L, 0.06 mmol) in CHCl3 (6 ml). Then, a solution of Cu(NO3)2 (0.02 mmol) in CH3OH (6 ml) was layered over the buffer layer, and the resultant reaction was left to stand at room temperature. After ca three weeks, green block single crystals appeared at the boundary. Yield: ~30% (based on L).

Refinement

C-bound H atoms were positioned geometrically and refined in the riding-model approximation, with C—H = 0.93Å and Uiso(H) = 1.2Ueq.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I). Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

The crystal packing for (I).

Crystal data

[Cu(NO3)2(C32H22N4)] F(000) = 1332
Mr = 650.10 Dx = 1.608 Mg m−3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 4661 reflections
a = 14.960 (3) Å θ = 1.9–28.7°
b = 15.237 (3) Å µ = 0.88 mm−1
c = 12.139 (2) Å T = 293 K
β = 103.94 (3)° Block, green
V = 2685.7 (9) Å3 0.20 × 0.18 × 0.15 mm
Z = 4

Data collection

Rigaku Mercury CCD diffractometer 2371 independent reflections
Radiation source: fine-focus sealed tube 2181 reflections with I > 2σ(I)
graphite Rint = 0.044
Detector resolution: 9 pixels mm-1 θmax = 25.0°, θmin = 1.9°
ω scans h = −17→17
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) k = −18→18
Tmin = 0.839, Tmax = 0.877 l = −14→14
13493 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124 H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0735P)2 + 6.1716P] where P = (Fo2 + 2Fc2)/3
2371 reflections (Δ/σ)max = 0.001
204 parameters Δρmax = 0.37 e Å−3
0 restraints Δρmin = −0.77 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 1.0000 1.08431 (3) 0.7500 0.0158 (2)
N1 0.90976 (16) 1.00076 (15) 0.7873 (2) 0.0147 (5)
N2 0.79830 (16) 0.95918 (15) 0.8684 (2) 0.0127 (5)
N3 1.00584 (19) 1.19959 (17) 0.5927 (2) 0.0228 (6)
C1 0.86254 (19) 1.01906 (19) 0.8646 (2) 0.0149 (6)
H1A 0.8733 1.0684 0.9110 0.018*
C2 0.87224 (19) 0.92203 (18) 0.7368 (2) 0.0124 (6)
C3 0.89502 (19) 0.87094 (19) 0.6515 (2) 0.0144 (6)
H3A 0.9423 0.8872 0.6180 0.017*
C4 0.8443 (2) 0.79544 (19) 0.6192 (2) 0.0176 (6)
H4A 0.8587 0.7594 0.5641 0.021*
C5 0.7707 (2) 0.77168 (19) 0.6684 (3) 0.0177 (6)
H5A 0.7365 0.7217 0.6423 0.021*
C6 0.74853 (18) 0.82031 (18) 0.7533 (2) 0.0135 (6)
H6A 0.7009 0.8041 0.7862 0.016*
C7 0.80152 (19) 0.89544 (18) 0.7875 (2) 0.0119 (6)
C8 0.73918 (18) 0.96045 (18) 0.9471 (2) 0.0114 (6)
C9 0.7327 (2) 0.8866 (2) 1.0116 (3) 0.0189 (7)
H9A 0.7667 0.8365 1.0055 0.023*
C10 0.6748 (2) 0.88846 (19) 1.0852 (3) 0.0180 (6)
H10A 0.6696 0.8386 1.1273 0.022*
C11 0.62384 (18) 0.96369 (18) 1.0978 (2) 0.0113 (6)
C12 0.63268 (18) 1.03720 (18) 1.0321 (2) 0.0112 (6)
H12A 0.6000 1.0880 1.0391 0.013*
C13 0.68927 (19) 1.03586 (18) 0.9565 (2) 0.0116 (6)
H13A 0.6937 1.0850 0.9127 0.014*
C14 0.56072 (18) 0.96408 (18) 1.1761 (2) 0.0108 (6)
C15 0.52982 (19) 1.04264 (18) 1.2139 (2) 0.0129 (6)
H15A 0.5494 1.0958 1.1903 0.015*
C16 0.52938 (19) 0.88512 (19) 1.2128 (2) 0.0126 (6)
H16A 0.5478 0.8320 1.1875 0.015*
O1 1.06322 (14) 1.18409 (14) 0.68862 (19) 0.0224 (5)
O2 1.01639 (19) 1.26531 (16) 0.5384 (2) 0.0373 (6)
O3 0.94347 (17) 1.14482 (17) 0.5587 (2) 0.0352 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.0152 (3) 0.0149 (3) 0.0202 (3) 0.000 0.0099 (2) 0.000
N1 0.0161 (12) 0.0147 (12) 0.0160 (12) −0.0024 (10) 0.0092 (10) −0.0034 (10)
N2 0.0140 (12) 0.0135 (12) 0.0132 (12) 0.0014 (9) 0.0084 (10) −0.0008 (9)
N3 0.0290 (15) 0.0182 (14) 0.0267 (15) 0.0031 (11) 0.0172 (13) 0.0032 (12)
C1 0.0163 (14) 0.0151 (14) 0.0151 (14) −0.0004 (11) 0.0070 (12) −0.0004 (12)
C2 0.0091 (13) 0.0161 (14) 0.0119 (14) −0.0013 (10) 0.0024 (11) 0.0011 (11)
C3 0.0115 (13) 0.0217 (15) 0.0117 (14) 0.0037 (11) 0.0061 (11) 0.0003 (12)
C4 0.0203 (15) 0.0170 (15) 0.0152 (15) 0.0047 (12) 0.0037 (12) −0.0035 (12)
C5 0.0196 (15) 0.0118 (14) 0.0202 (16) −0.0010 (12) 0.0020 (12) −0.0021 (12)
C6 0.0097 (13) 0.0134 (13) 0.0182 (15) 0.0005 (11) 0.0050 (12) 0.0044 (11)
C7 0.0130 (13) 0.0130 (13) 0.0108 (14) 0.0031 (11) 0.0053 (11) 0.0014 (11)
C8 0.0100 (13) 0.0145 (14) 0.0127 (14) −0.0015 (11) 0.0085 (11) −0.0011 (11)
C9 0.0200 (16) 0.0161 (15) 0.0262 (17) 0.0077 (12) 0.0164 (13) 0.0053 (13)
C10 0.0199 (15) 0.0145 (15) 0.0239 (16) 0.0048 (12) 0.0140 (13) 0.0085 (12)
C11 0.0103 (13) 0.0148 (14) 0.0097 (13) −0.0005 (11) 0.0040 (11) 0.0004 (11)
C12 0.0112 (13) 0.0119 (14) 0.0113 (13) 0.0003 (10) 0.0044 (11) −0.0013 (11)
C13 0.0140 (13) 0.0118 (13) 0.0100 (13) −0.0020 (11) 0.0048 (11) 0.0015 (11)
C14 0.0096 (13) 0.0156 (14) 0.0086 (13) 0.0006 (10) 0.0046 (11) 0.0010 (11)
C15 0.0134 (13) 0.0118 (14) 0.0156 (14) −0.0011 (11) 0.0078 (12) 0.0019 (11)
C16 0.0142 (13) 0.0130 (14) 0.0129 (14) 0.0015 (11) 0.0080 (12) −0.0003 (11)
O1 0.0206 (11) 0.0194 (11) 0.0294 (12) −0.0026 (9) 0.0102 (10) −0.0009 (9)
O2 0.0480 (16) 0.0246 (13) 0.0474 (16) 0.0038 (11) 0.0273 (13) 0.0133 (12)
O3 0.0337 (14) 0.0330 (14) 0.0357 (14) −0.0083 (11) 0.0020 (12) 0.0044 (11)

Geometric parameters (Å, °)

Cu1—N1 1.985 (2) C5—C6 1.373 (4)
Cu1—N1i 1.985 (2) C5—H5A 0.9300
Cu1—O1i 2.025 (2) C6—C7 1.398 (4)
Cu1—O1 2.025 (2) C6—H6A 0.9300
Cu1—O3 2.452 (3) C8—C9 1.388 (4)
Cu1—O3i 2.452 (3) C8—C13 1.390 (4)
N1—C1 1.333 (4) C9—C10 1.386 (4)
N1—C2 1.401 (4) C9—H9A 0.9300
N2—C1 1.334 (4) C10—C11 1.406 (4)
N2—C7 1.390 (4) C10—H10A 0.9300
N2—C8 1.450 (3) C11—C12 1.400 (4)
N3—O2 1.230 (3) C11—C14 1.493 (4)
N3—O3 1.246 (4) C12—C13 1.390 (4)
N3—O1 1.291 (4) C12—H12A 0.9300
C1—H1A 0.9300 C13—H13A 0.9300
C2—C3 1.401 (4) C14—C15 1.400 (4)
C2—C7 1.406 (4) C14—C16 1.402 (4)
C3—C4 1.382 (4) C15—C15ii 1.394 (5)
C3—H3A 0.9300 C15—H15A 0.9300
C4—C5 1.420 (4) C16—C16ii 1.404 (5)
C4—H4A 0.9300 C16—H16A 0.9300
N1—Cu1—N1i 100.24 (14) C7—C6—H6A 121.9
N1—Cu1—O1i 89.66 (9) N2—C7—C6 131.9 (3)
N1i—Cu1—O1i 165.63 (9) N2—C7—C2 105.4 (2)
N1—Cu1—O1 165.63 (9) C6—C7—C2 122.6 (3)
N1i—Cu1—O1 89.66 (9) C9—C8—C13 120.8 (3)
O1i—Cu1—O1 82.68 (12) C9—C8—N2 119.8 (2)
C1—N1—C2 105.2 (2) C13—C8—N2 119.4 (2)
C1—N1—Cu1 122.08 (19) C10—C9—C8 119.1 (3)
C2—N1—Cu1 132.22 (19) C10—C9—H9A 120.5
C1—N2—C7 107.8 (2) C8—C9—H9A 120.5
C1—N2—C8 124.9 (2) C9—C10—C11 121.8 (3)
C7—N2—C8 127.2 (2) C9—C10—H10A 119.1
O2—N3—O3 123.4 (3) C11—C10—H10A 119.1
O2—N3—O1 119.3 (3) C12—C11—C10 117.5 (3)
O3—N3—O1 117.3 (2) C12—C11—C14 121.4 (2)
N1—C1—N2 112.9 (3) C10—C11—C14 121.0 (2)
N1—C1—H1A 123.5 C13—C12—C11 121.4 (3)
N2—C1—H1A 123.5 C13—C12—H12A 119.3
C3—C2—N1 131.0 (3) C11—C12—H12A 119.3
C3—C2—C7 120.4 (3) C8—C13—C12 119.4 (3)
N1—C2—C7 108.6 (2) C8—C13—H13A 120.3
C4—C3—C2 117.2 (3) C12—C13—H13A 120.3
C4—C3—H3A 121.4 C15—C14—C16 117.9 (3)
C2—C3—H3A 121.4 C15—C14—C11 121.4 (2)
C3—C4—C5 121.4 (3) C16—C14—C11 120.7 (2)
C3—C4—H4A 119.3 C15ii—C15—C14 121.21 (16)
C5—C4—H4A 119.3 C15ii—C15—H15A 119.4
C6—C5—C4 122.0 (3) C14—C15—H15A 119.4
C6—C5—H5A 119.0 C14—C16—C16ii 120.89 (16)
C4—C5—H5A 119.0 C14—C16—H16A 119.6
C5—C6—C7 116.3 (3) C16ii—C16—H16A 119.6
C5—C6—H6A 121.9 N3—O1—Cu1 101.61 (16)
N1i—Cu1—N1—C1 147.7 (3) N1—C2—C7—C6 178.1 (2)
O1i—Cu1—N1—C1 −21.8 (2) C1—N2—C8—C9 −128.1 (3)
O1—Cu1—N1—C1 −79.4 (4) C7—N2—C8—C9 49.3 (4)
N1i—Cu1—N1—C2 −41.6 (2) C1—N2—C8—C13 52.2 (4)
O1i—Cu1—N1—C2 148.9 (3) C7—N2—C8—C13 −130.4 (3)
O1—Cu1—N1—C2 91.3 (4) C13—C8—C9—C10 0.6 (4)
C2—N1—C1—N2 0.1 (3) N2—C8—C9—C10 −179.1 (3)
Cu1—N1—C1—N2 173.00 (18) C8—C9—C10—C11 −1.2 (5)
C7—N2—C1—N1 −0.3 (3) C9—C10—C11—C12 0.7 (4)
C8—N2—C1—N1 177.6 (2) C9—C10—C11—C14 179.0 (3)
C1—N1—C2—C3 −179.0 (3) C10—C11—C12—C13 0.4 (4)
Cu1—N1—C2—C3 9.1 (5) C14—C11—C12—C13 −178.0 (3)
C1—N1—C2—C7 0.1 (3) C9—C8—C13—C12 0.4 (4)
Cu1—N1—C2—C7 −171.8 (2) N2—C8—C13—C12 −179.9 (2)
N1—C2—C3—C4 −179.9 (3) C11—C12—C13—C8 −0.9 (4)
C7—C2—C3—C4 1.0 (4) C12—C11—C14—C15 −19.7 (4)
C2—C3—C4—C5 1.5 (4) C10—C11—C14—C15 161.9 (3)
C3—C4—C5—C6 −2.7 (4) C12—C11—C14—C16 159.3 (3)
C4—C5—C6—C7 1.0 (4) C10—C11—C14—C16 −19.0 (4)
C1—N2—C7—C6 −177.8 (3) C16—C14—C15—C15ii 0.4 (5)
C8—N2—C7—C6 4.5 (5) C11—C14—C15—C15ii 179.4 (3)
C1—N2—C7—C2 0.3 (3) C15—C14—C16—C16ii −1.5 (5)
C8—N2—C7—C2 −177.4 (3) C11—C14—C16—C16ii 179.5 (3)
C5—C6—C7—N2 179.4 (3) O2—N3—O1—Cu1 170.1 (2)
C5—C6—C7—C2 1.6 (4) O3—N3—O1—Cu1 −11.7 (3)
C3—C2—C7—N2 179.0 (3) N1—Cu1—O1—N3 −28.9 (4)
N1—C2—C7—N2 −0.2 (3) N1i—Cu1—O1—N3 105.01 (17)
C3—C2—C7—C6 −2.7 (4) O1i—Cu1—O1—N3 −87.19 (17)

Symmetry codes: (i) −x+2, y, −z+3/2; (ii) −x+1, y, −z+5/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5843).

References

  1. Jin, C. M., Lu, H., Wu, L. Y. & Huang, J. (2006). Chem. Commun. pp. 5039–5041. [DOI] [PubMed]
  2. Li, Z. X., Hu, T. L., Ma, H., Zeng, Y. F., Li, C. J., Tong, M. L. & Bu, X. H. (2010). Cryst. Growth Des. 10, 1138–1144.
  3. Rigaku/MSC (2005). CrystalClear Rigaku/MSC Inc., The Woodlands, Texas, USA.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Su, C. Y., Cai, Y. P., Chen, C. L., Smith, M. D., Kaim, W. & zur Loye, H. C. (2003). J. Am. Chem. Soc. 125, 8595–8613. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013596/hb5843sup1.cif

e-67-0m603-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013596/hb5843Isup2.hkl

e-67-0m603-Isup2.hkl (116.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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