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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 7;67(Pt 5):m527–m528. doi: 10.1107/S1600536811009755

Poly[[diaqua­(μ2-1,4-dioxane-κ2 O:O′)(μ2-2,3,5,6-tetra­fluoro­benzene-1,4-dicarboxyl­ato-κ2 O 1:O 4)copper(II)] 1,4-dioxane disolvate dihydrate]

Jing Yu a, Yi-Feng Zhang a, Fu-An Sun a, Qun Chen a,*
PMCID: PMC3089286  PMID: 21754269

Abstract

In the title complex, {[Cu(C8F4O4)(C4H8O2)(H2O)2]·2C4H8O2·2H2O}n, the CuII ion is six-coordinated by two oxygen donors from two trans 2,3,5,6-tetra­fluoro-1,4-dicarboxyl­ate (BDC-F4) ligands, two O atoms from two chair 1,4-dioxane ligands and two O atoms from two terminal water mol­ecules, adopting a distorted octa­hedral coordinated geometry. Each BDC-F4 anion bridges two CuII ions in a bis-monodentate fashion, forming a [Cu(BDC-F4)]n chain. These chains are further linked by bridging 1,4-dioxane ligands, generating a two-dimensional net with approximately recta­ngular grids of 11.253 × 7.654 Å. Such adjacent parallel layers are connected by O—H⋯O hydrogen bonds between guest water mol­ecules and the uncoordinated carboxyl­ate O atoms and coordinated water mol­ecules into the final three-dimensional supra­molecular network.

Related literature

For the solvent template effect of 1,4-dioxane in the construction of coordination polymers, see: Chen et al. (2008 ▶); He et al. (2009 ▶).graphic file with name e-67-0m527-scheme1.jpg

Experimental

Crystal data

  • [Cu(C8F4O4)(C4H8O2)(H2O)2]·2C4H8O2·2H2O

  • M r = 636.00

  • Monoclinic, Inline graphic

  • a = 7.654 (2) Å

  • b = 11.253 (3) Å

  • c = 16.126 (4) Å

  • β = 99.634 (6)°

  • V = 1369.4 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.89 mm−1

  • T = 297 K

  • 0.20 × 0.15 × 0.12 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.842, T max = 0.901

  • 7646 measured reflections

  • 2536 independent reflections

  • 2011 reflections with I > 2σ(I)

  • R int = 0.030

Refinement

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.182

  • S = 1.07

  • 2536 reflections

  • 173 parameters

  • H-atom parameters constrained

  • Δρmax = 0.77 e Å−3

  • Δρmin = −0.47 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811009755/jj2078sup1.cif

e-67-0m527-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009755/jj2078Isup2.hkl

e-67-0m527-Isup2.hkl (124.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O4—H4B⋯O7 0.82 1.92 2.670 (5) 152
O4—H4A⋯O1i 0.82 1.85 2.641 (3) 162
O7—H7C⋯O6ii 0.82 2.03 2.807 (7) 158
O7—H7D⋯O1iii 0.82 2.09 2.797 (5) 144

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

Recently, our group has been engaged in studying the influence that a range of solvent species have on the structures of a series of MnII—BDC-Cl4 polymers with 2,3,5,6-tetracholorobenzene-1,4-dicarboxylate (BDC-Cl4) ligand (Chen et al., 2008; He et al.., 2009). Among them, the 1,4-dioxane (dioxane) solvent molecule may serve as a solvent template to play a key role in controlling the resulting polymeric network. To further understand the solvent template effect of 1,4-dioxane, we employed the tetrafluorinated benzene-1,4-dicarboxylic acid (H2BDC-F4) ligand to assemble with a copper(II) ion in the presence of dioxane and obtained the title two-dimensional coordination polymer {[Cu(BDC-F4)(dioxane)(H2O)2].(dioxane)2(H2O)2}n, (I).

The asymmetric unit of (I) is composed of one CuII center, one 2,3,5,6-tetrafluoro-1,4-dicarboxylate (BDC-F4) anion, one dioxane ligand, two coordinated water molecules, and two lattice dioxane as well as two water moieties (Fig. 1). Each CuII ion is six-coordinated by two oxygen donors from two trans 2,3,5,6-tetrafluoro-1,4-dicarboxylate (BDC-F4) ligands, two oxygen atoms from two chair dioxane ligands, and two oxygen atoms from two terminal water molecules, adopting a distorted octahedral coordinated geometry. Each BDC-F4 anion bridges two CuII ions in a bis-monodentate fashion to form a one-dimensional [Cu(BDC-F4)]n chain, which is further joined together by bridging dioxane ligands to generate a two-dimensional net with approximately rectangular grids of 11.253 Å × 7.654 Å (Cu···Cu nucleus-to-nucleus), where the Cu···Cu···Cu angles are 90.8 and 89.2°, respectively (Fig. 2). Such adjacent parallel layers are connected by O—H···O hydrogen bonds between guest water molecules with the uncoordinated carboxylate oxygen atoms and coordinated water molecules to fulfill the final three-dimensional supramolecular network.

Experimental

An aqueous solution (2 ml) of Cu(ClO4)2.6H2O (37.1 mg, 0.10 mmol) was added to a dioxane solution (4 ml) of H2BDC-F4 (23.8 mg, 0.10 mmol) with stirring for 15 min. Then, the reaction mixture was filtered and left to stand at room temperature. After 3 days, well blue block crystals of the title compound suitable for X-ray diffraction were obtained by slow evaporation of the solvents in 52% yield (33.1 mg, based on H2BDC-F4).

Refinement

All H atoms bound to C atoms were assigned to calculated positions with C—H = 0.97 Å, and refined using a riding model, with Uiso(H)=1.2Ueq (C). The H atoms of the water molecule were firstly located in a difference Fourier map and then refined with distance restraints O—H = 0.820 (1) Å and H···H = 1.430 (1) Å, and finally constrained to ride on the O atom with [Uiso(H) = 1.5 Ueq (O)].

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, (I), with the atom-numbering scheme. Displacement ellipsoids are draw at the 30% probability level. Hydrogen atoms are omitted for clarity. Symmetry code: (A) 1 - x, 1 - y, -z; (B) 1 - x, -y, -z.

Fig. 2.

Fig. 2.

The two-dimensional structure of the title compound viewed down the c axis. Hydrogen atoms are omitted for clarity.

Crystal data

[Cu(C8F4O4)(C4H8O2)(H2O)2]·2C4H8O2·2H2O F(000) = 658
Mr = 636.00 Dx = 1.543 Mg m−3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3648 reflections
a = 7.654 (2) Å θ = 2.6–29.9°
b = 11.253 (3) Å µ = 0.89 mm−1
c = 16.126 (4) Å T = 297 K
β = 99.634 (6)° Block, blue
V = 1369.4 (6) Å3 0.20 × 0.15 × 0.12 mm
Z = 2

Data collection

Bruker APEXII CCD diffractometer 2536 independent reflections
Radiation source: fine-focus sealed tube 2011 reflections with I > 2σ(I)
graphite Rint = 0.030
φ and ω scans θmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) h = −9→9
Tmin = 0.842, Tmax = 0.901 k = −11→13
7646 measured reflections l = −19→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.1255P)2 + 0.7817P] where P = (Fo2 + 2Fc2)/3
2536 reflections (Δ/σ)max < 0.001
173 parameters Δρmax = 0.77 e Å−3
0 restraints Δρmin = −0.47 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.5000 0.0000 0.0000 0.0256 (3)
O1 0.4795 (5) 0.2295 (2) −0.12878 (17) 0.0582 (9)
O2 0.4927 (3) 0.1749 (2) 0.00527 (13) 0.0332 (6)
O3 0.1848 (4) −0.0053 (3) 0.0096 (3) 0.0592 (10)
O4 0.5645 (4) 0.00298 (18) 0.12299 (16) 0.0356 (6)
H4A 0.5557 −0.0669 0.1362 0.053*
H4B 0.5186 0.0562 0.1466 0.053*
O5 −0.0024 (8) 0.7388 (5) 0.2701 (5) 0.135 (2)
O6 0.2054 (7) 0.9379 (4) 0.3007 (4) 0.1177 (19)
O7 0.4024 (5) 0.1145 (4) 0.2350 (2) 0.0845 (13)
H7C 0.3248 0.0770 0.2530 0.127*
H7D 0.4640 0.1633 0.2643 0.127*
C1 0.4872 (4) 0.2499 (3) −0.0530 (2) 0.0317 (8)
C2 0.4925 (4) 0.3790 (3) −0.0259 (2) 0.0314 (7)
C3 0.3590 (5) 0.4308 (3) 0.0086 (3) 0.0442 (10)
C4 0.6337 (5) 0.4519 (4) −0.0345 (3) 0.0431 (9)
C5 0.1002 (7) 0.0757 (7) 0.0515 (6) 0.111 (3)
H5A 0.1186 0.0516 0.1101 0.133*
H5B 0.1612 0.1508 0.0492 0.133*
C6 0.0753 (7) −0.0976 (6) −0.0285 (6) 0.101 (3)
H6A 0.1210 −0.1224 −0.0784 0.121*
H6B 0.0881 −0.1645 0.0099 0.121*
C7 0.1634 (10) 0.7455 (7) 0.2473 (5) 0.109 (2)*
H7A 0.1508 0.7722 0.1894 0.131*
H7B 0.2155 0.6667 0.2503 0.131*
C8 0.2799 (8) 0.8240 (5) 0.2992 (4) 0.0816 (16)
H8A 0.3044 0.7925 0.3560 0.098*
H8B 0.3912 0.8293 0.2782 0.098*
C9 0.0421 (9) 0.9318 (7) 0.3302 (6) 0.110 (3)
H9A −0.0091 1.0105 0.3307 0.132*
H9B 0.0606 0.9009 0.3872 0.132*
C10 −0.0808 (8) 0.8519 (9) 0.2736 (5) 0.111 (3)
H10A −0.1918 0.8443 0.2946 0.133*
H10B −0.1058 0.8859 0.2176 0.133*
F1 0.2156 (4) 0.3659 (2) 0.0169 (3) 0.0886 (12)
F2 0.7708 (4) 0.4067 (2) −0.0662 (2) 0.0849 (12)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.0368 (4) 0.0138 (4) 0.0265 (4) 0.0004 (2) 0.0061 (2) −0.00102 (18)
O1 0.118 (3) 0.0239 (14) 0.0345 (15) 0.0042 (15) 0.0166 (16) 0.0019 (11)
O2 0.0513 (15) 0.0138 (12) 0.0359 (13) 0.0002 (9) 0.0113 (11) −0.0005 (9)
O3 0.0333 (14) 0.057 (2) 0.087 (3) −0.0027 (12) 0.0096 (15) −0.0362 (16)
O4 0.0545 (16) 0.0235 (14) 0.0279 (13) 0.0028 (10) 0.0050 (11) −0.0025 (8)
O5 0.122 (5) 0.088 (4) 0.175 (6) −0.026 (4) −0.030 (4) 0.009 (4)
O6 0.107 (3) 0.071 (3) 0.193 (6) −0.016 (3) 0.076 (4) −0.010 (3)
O7 0.100 (3) 0.085 (3) 0.081 (2) −0.040 (2) 0.052 (2) −0.047 (2)
C1 0.0404 (18) 0.0200 (18) 0.0345 (19) 0.0026 (13) 0.0053 (14) 0.0001 (13)
C2 0.045 (2) 0.0178 (16) 0.0322 (17) 0.0039 (14) 0.0096 (14) 0.0022 (15)
C3 0.047 (2) 0.025 (2) 0.067 (3) −0.0066 (15) 0.027 (2) −0.0025 (17)
C4 0.049 (2) 0.0226 (19) 0.064 (3) 0.0014 (16) 0.0288 (19) −0.0039 (18)
C5 0.048 (3) 0.108 (5) 0.175 (7) −0.011 (3) 0.018 (4) −0.102 (5)
C6 0.044 (3) 0.075 (4) 0.179 (7) −0.001 (3) 0.006 (3) −0.077 (4)
C8 0.080 (4) 0.080 (4) 0.085 (4) 0.009 (3) 0.016 (3) −0.005 (3)
C9 0.093 (5) 0.090 (5) 0.159 (8) 0.012 (4) 0.053 (5) −0.018 (5)
C10 0.061 (3) 0.154 (8) 0.112 (6) 0.011 (4) −0.004 (3) 0.021 (6)
F1 0.0747 (18) 0.0350 (15) 0.175 (4) −0.0207 (14) 0.075 (2) −0.0258 (18)
F2 0.0752 (19) 0.0419 (15) 0.157 (3) −0.0095 (13) 0.076 (2) −0.0325 (17)

Geometric parameters (Å, °)

Cu1—O4 1.962 (3) C3—F1 1.344 (4)
Cu1—O4i 1.962 (3) C3—C4ii 1.382 (6)
Cu1—O2i 1.971 (3) C4—F2 1.343 (4)
Cu1—O2 1.971 (3) C4—C3ii 1.382 (6)
Cu1—O3 2.444 (3) C5—C6iii 1.355 (8)
O1—C1 1.234 (4) C5—H5A 0.9700
O2—C1 1.259 (4) C5—H5B 0.9700
O3—C5 1.361 (6) C6—C5iii 1.355 (8)
O3—C6 1.409 (6) C6—H6A 0.9700
O4—H4A 0.8203 C6—H6B 0.9700
O4—H4B 0.8202 C7—C8 1.424 (9)
O5—C7 1.381 (9) C7—H7A 0.9700
O5—C10 1.412 (9) C7—H7B 0.9700
O6—C8 1.405 (7) C8—H8A 0.9700
O6—C9 1.411 (8) C8—H8B 0.9700
O7—H7C 0.8202 C9—C10 1.496 (11)
O7—H7D 0.8203 C9—H9A 0.9700
C1—C2 1.515 (5) C9—H9B 0.9700
C2—C3 1.372 (5) C10—H10A 0.9700
C2—C4 1.382 (5) C10—H10B 0.9700
O4—Cu1—O4i 180.0 O3—C5—H5A 107.0
O4—Cu1—O2i 93.24 (8) C6iii—C5—H5B 107.0
O4i—Cu1—O2i 86.76 (8) O3—C5—H5B 107.0
O4—Cu1—O2 86.76 (8) H5A—C5—H5B 106.8
O4i—Cu1—O2 93.24 (8) C5iii—C6—O3 118.4 (5)
O2i—Cu1—O2 180.0 C5iii—C6—H6A 107.7
O4—Cu1—O3 91.16 (13) O3—C6—H6A 107.7
O4i—Cu1—O3 88.85 (13) C5iii—C6—H6B 107.7
O2i—Cu1—O3 90.79 (9) O3—C6—H6B 107.7
O2—Cu1—O3 89.21 (9) H6A—C6—H6B 107.1
C1—O2—Cu1 129.4 (2) O5—C7—C8 112.9 (6)
C5—O3—C6 114.3 (4) O5—C7—H7A 109.0
C5—O3—Cu1 124.9 (3) C8—C7—H7A 109.0
C6—O3—Cu1 120.7 (3) O5—C7—H7B 109.0
Cu1—O4—H4A 103.2 C8—C7—H7B 109.0
Cu1—O4—H4B 115.3 H7A—C7—H7B 107.8
H4A—O4—H4B 121.3 O6—C8—C7 111.1 (6)
C7—O5—C10 112.2 (6) O6—C8—H8A 109.4
C8—O6—C9 110.2 (5) C7—C8—H8A 109.4
H7C—O7—H7D 121.4 O6—C8—H8B 109.4
O1—C1—O2 127.2 (3) C7—C8—H8B 109.4
O1—C1—C2 117.3 (3) H8A—C8—H8B 108.0
O2—C1—C2 115.5 (3) O6—C9—C10 109.0 (6)
C3—C2—C4 115.8 (3) O6—C9—H9A 109.9
C3—C2—C1 122.6 (3) C10—C9—H9A 109.9
C4—C2—C1 121.6 (3) O6—C9—H9B 109.9
F1—C3—C2 119.0 (3) C10—C9—H9B 109.9
F1—C3—C4ii 118.7 (3) H9A—C9—H9B 108.3
C2—C3—C4ii 122.2 (3) O5—C10—C9 109.7 (5)
F2—C4—C3ii 118.9 (3) O5—C10—H10A 109.7
F2—C4—C2 119.1 (3) C9—C10—H10A 109.7
C3ii—C4—C2 122.0 (3) O5—C10—H10B 109.7
C6iii—C5—O3 121.3 (5) C9—C10—H10B 109.7
C6iii—C5—H5A 107.0 H10A—C10—H10B 108.2
O4—Cu1—O2—C1 166.7 (3) C1—C2—C3—F1 −1.6 (6)
O4i—Cu1—O2—C1 −13.3 (3) C4—C2—C3—C4ii −1.1 (7)
O3—Cu1—O2—C1 −102.1 (3) C1—C2—C3—C4ii 178.9 (4)
O4—Cu1—O3—C5 55.5 (6) C3—C2—C4—F2 178.8 (4)
O4i—Cu1—O3—C5 −124.5 (6) C1—C2—C4—F2 −1.2 (6)
O2i—Cu1—O3—C5 148.8 (6) C3—C2—C4—C3ii 1.1 (7)
O2—Cu1—O3—C5 −31.2 (6) C1—C2—C4—C3ii −178.9 (4)
O4—Cu1—O3—C6 −123.5 (5) C6—O3—C5—C6iii −27.8 (12)
O4i—Cu1—O3—C6 56.5 (5) Cu1—O3—C5—C6iii 153.1 (6)
O2i—Cu1—O3—C6 −30.2 (5) C5—O3—C6—C5iii 26.9 (12)
O2—Cu1—O3—C6 149.8 (5) Cu1—O3—C6—C5iii −154.0 (6)
Cu1—O2—C1—O1 2.5 (6) C10—O5—C7—C8 54.0 (9)
Cu1—O2—C1—C2 −176.9 (2) C9—O6—C8—C7 58.4 (8)
O1—C1—C2—C3 115.0 (4) O5—C7—C8—O6 −55.3 (9)
O2—C1—C2—C3 −65.5 (5) C8—O6—C9—C10 −59.1 (9)
O1—C1—C2—C4 −65.0 (5) C7—O5—C10—C9 −54.3 (9)
O2—C1—C2—C4 114.5 (4) O6—C9—C10—O5 57.0 (10)
C4—C2—C3—F1 178.4 (4)

Symmetry codes: (i) −x+1, −y, −z; (ii) −x+1, −y+1, −z; (iii) −x, −y, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O4—H4B···O7 0.82 1.92 2.670 (5) 152
C5—H5B···F1 0.97 2.53 3.453 (8) 160
O4—H4A···O1i 0.82 1.85 2.641 (3) 162
O7—H7C···O6iv 0.82 2.03 2.807 (7) 158
O7—H7D···O1v 0.82 2.09 2.797 (5) 144

Symmetry codes: (i) −x+1, −y, −z; (iv) x, y−1, z; (v) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JJ2078).

References

  1. Brandenburg, K. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Chen, S.-C., Zhang, Z.-H., Huang, K.-L., Chen, Q., He, M.-Y., Cui, A.-J., Li, C., Liu, Q. & Du, M. (2008). Cryst. Growth Des. 8, 3473–3445.
  4. He, M.-Y., Chen, S.-C., Zhang, Z.-H., Huang, K.-L., Yin, F.-H. & Chen, Q. (2009). Inorg. Chim. Acta, 362, 2569–2576.
  5. Sheldrick, G. M. (2003). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811009755/jj2078sup1.cif

e-67-0m527-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009755/jj2078Isup2.hkl

e-67-0m527-Isup2.hkl (124.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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