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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 16;67(Pt 5):o1157. doi: 10.1107/S1600536811013705

5-Cyclo­hexyl-2-methyl-3-phenyl­sulfinyl-1-benzofuran

Hong Dae Choi a, Pil Ja Seo a, Byeng Wha Son b, Uk Lee b,*
PMCID: PMC3089290  PMID: 21754465

Abstract

In the title compound, C21H22O2S, the cyclo­hexyl ring adopts a chair conformation. The phenyl ring makes a dihedral angle of 84.80 (4)° with the mean plane of the benzofuran fragment. In the crystal, mol­ecules are linked through weak inter­molecular C—H⋯O hydrogen bonds.

Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For structural studies of related 3-aryl­sulfinyl-2-methyl-1-benzofuran derivatives, see: Choi et al. (2010 ▶, 2011 ▶).graphic file with name e-67-o1157-scheme1.jpg

Experimental

Crystal data

  • C21H22O2S

  • M r = 338.45

  • Triclinic, Inline graphic

  • a = 8.8532 (2) Å

  • b = 10.2011 (2) Å

  • c = 10.4752 (3) Å

  • α = 90.734 (1)°

  • β = 111.568 (1)°

  • γ = 97.127 (1)°

  • V = 871.25 (4) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.20 mm−1

  • T = 173 K

  • 0.35 × 0.25 × 0.16 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.650, T max = 0.746

  • 15560 measured reflections

  • 4012 independent reflections

  • 3481 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.106

  • S = 1.07

  • 4012 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.44 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013705/zl2365sup1.cif

e-67-o1157-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013705/zl2365Isup2.hkl

e-67-o1157-Isup2.hkl (196.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C15—H15B⋯O2i 0.98 2.52 3.4516 (19) 159
C21—H21⋯O2ii 0.95 2.47 3.2793 (18) 144

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Many compounds having a benzofuran ring system have attracted much attention owing to their diverse pharmacological properties such as antibacterial and antifungal, antitumor and antiviral, and antimicrobial activities (Aslam et al., 2009, Galal et al., 2009, Khan et al., 2005). These compounds widely occur in nature (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our study of the substituent effect on the solid state structures of 3-arylsulfinyl-2-methyl-1-benzofuran analogues (Choi et al., 2010, 2011), we report here on the crystal structure of the title compound

In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.004 (1) Å from the least-squares plane defined by the nine constituent atoms. The cyclohexyl ring is in the chair form. The dihedral angle formed by the mean plane of the benzofuran ring and the phenyl ring is 84.80 (4)° . The crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···O hydrogen bonds; the first one between a methyl H atom and the O atom of the sulfinyl group (Table 1; C15—H15B···O2i), and the second one between a phenyl H atom and the O atom of the sulfinyl group (Table 1; C21—H21···O2ii).

Experimental

77% 3-chloroperoxybenzoic acid (269 mg, 1.2 mmol) was added in small portions to a stirred solution of 5-cyclohexyl-2-methyl-3-phenylsulfanyl-1-benzofuran (354 mg, 1.1 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 5h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane–ethyl acetate, 2:1 v/v) to afford the title compound as a colorless solid [yield 71%, m.p. 406–407 K; Rf = 0.68 (hexane–ethyl acetate, 2:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in ethyl acetate at room temperature.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) = 1.2Ueq(C) for aryl, methine and methylene, and 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the C–H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) - x + 1, - y, - z; (ii) - x + 1, - y, -z + 1.]

Crystal data

C21H22O2S Z = 2
Mr = 338.45 F(000) = 360
Triclinic, P1 Dx = 1.290 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.8532 (2) Å Cell parameters from 6502 reflections
b = 10.2011 (2) Å θ = 2.6–27.5°
c = 10.4752 (3) Å µ = 0.20 mm−1
α = 90.734 (1)° T = 173 K
β = 111.568 (1)° Block, colourless
γ = 97.127 (1)° 0.35 × 0.25 × 0.16 mm
V = 871.25 (4) Å3

Data collection

Bruker SMART APEXII CCD diffractometer 4012 independent reflections
Radiation source: rotating anode 3481 reflections with I > 2σ(I)
graphite multilayer Rint = 0.028
Detector resolution: 10.0 pixels mm-1 θmax = 27.5°, θmin = 2.0°
φ and ω scans h = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −13→13
Tmin = 0.650, Tmax = 0.746 l = −13→13
15560 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: difference Fourier map
wR(F2) = 0.106 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0528P)2 + 0.2372P] where P = (Fo2 + 2Fc2)/3
4012 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.44 e Å−3
0 restraints Δρmin = −0.26 e Å−3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.33404 (4) 0.01587 (3) 0.18991 (3) 0.02947 (11)
O1 0.52084 (12) 0.32470 (10) 0.04883 (10) 0.0334 (2)
O2 0.45627 (13) −0.04998 (10) 0.29798 (11) 0.0388 (3)
C1 0.43524 (16) 0.16549 (13) 0.16271 (14) 0.0279 (3)
C2 0.55010 (16) 0.26393 (13) 0.26444 (14) 0.0264 (3)
C3 0.61465 (16) 0.28037 (13) 0.40727 (14) 0.0265 (3)
H3 0.5837 0.2160 0.4611 0.032*
C4 0.72549 (16) 0.39299 (13) 0.46990 (14) 0.0273 (3)
C5 0.76898 (17) 0.48649 (14) 0.38824 (15) 0.0328 (3)
H5 0.8443 0.5631 0.4321 0.039*
C6 0.70636 (18) 0.47162 (15) 0.24594 (16) 0.0347 (3)
H6 0.7366 0.5356 0.1914 0.042*
C7 0.59801 (17) 0.35912 (14) 0.18809 (14) 0.0291 (3)
C8 0.42408 (17) 0.20589 (14) 0.03698 (14) 0.0310 (3)
C9 0.79606 (17) 0.41638 (13) 0.62465 (14) 0.0284 (3)
H9 0.8821 0.4958 0.6485 0.034*
C10 0.6659 (2) 0.44576 (18) 0.68066 (16) 0.0416 (4)
H10A 0.6177 0.5245 0.6381 0.050*
H10B 0.5769 0.3698 0.6551 0.050*
C11 0.7379 (2) 0.47091 (17) 0.83653 (16) 0.0423 (4)
H11A 0.8200 0.5516 0.8617 0.051*
H11B 0.6496 0.4863 0.8694 0.051*
C12 0.81830 (19) 0.35505 (15) 0.90597 (15) 0.0368 (3)
H12A 0.7339 0.2767 0.8892 0.044*
H12B 0.8697 0.3763 1.0065 0.044*
C13 0.94782 (19) 0.32296 (16) 0.85200 (15) 0.0364 (3)
H13A 0.9925 0.2429 0.8941 0.044*
H13B 1.0391 0.3972 0.8792 0.044*
C14 0.87798 (18) 0.29943 (14) 0.69594 (14) 0.0315 (3)
H14A 0.7965 0.2184 0.6695 0.038*
H14B 0.9674 0.2850 0.6642 0.038*
C15 0.3295 (2) 0.14926 (17) −0.10566 (15) 0.0405 (4)
H15A 0.2767 0.0596 −0.1031 0.061*
H15B 0.4039 0.1459 −0.1552 0.061*
H15C 0.2456 0.2049 −0.1528 0.061*
C16 0.20788 (16) 0.08189 (12) 0.26836 (14) 0.0268 (3)
C17 0.06675 (19) 0.12795 (16) 0.18436 (16) 0.0387 (3)
H17 0.0404 0.1284 0.0879 0.046*
C18 −0.0358 (2) 0.17341 (18) 0.2422 (2) 0.0471 (4)
H18 −0.1330 0.2058 0.1854 0.057*
C19 0.0022 (2) 0.17188 (18) 0.3815 (2) 0.0483 (4)
H19 −0.0685 0.2035 0.4209 0.058*
C20 0.1428 (2) 0.12449 (18) 0.46414 (17) 0.0462 (4)
H20 0.1686 0.1236 0.5605 0.055*
C21 0.24659 (19) 0.07815 (15) 0.40774 (15) 0.0344 (3)
H21 0.3428 0.0444 0.4644 0.041*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0328 (2) 0.02712 (18) 0.02898 (19) 0.00368 (13) 0.01233 (15) −0.00168 (13)
O1 0.0350 (5) 0.0415 (6) 0.0285 (5) 0.0062 (4) 0.0171 (4) 0.0062 (4)
O2 0.0405 (6) 0.0351 (5) 0.0433 (6) 0.0142 (5) 0.0154 (5) 0.0074 (5)
C1 0.0279 (7) 0.0319 (7) 0.0263 (6) 0.0064 (5) 0.0123 (5) 0.0004 (5)
C2 0.0245 (6) 0.0276 (6) 0.0300 (7) 0.0064 (5) 0.0126 (5) 0.0031 (5)
C3 0.0264 (6) 0.0267 (6) 0.0279 (7) 0.0047 (5) 0.0114 (5) 0.0039 (5)
C4 0.0238 (6) 0.0269 (6) 0.0314 (7) 0.0062 (5) 0.0097 (5) 0.0031 (5)
C5 0.0287 (7) 0.0294 (7) 0.0402 (8) 0.0010 (5) 0.0133 (6) 0.0041 (6)
C6 0.0337 (7) 0.0353 (7) 0.0395 (8) 0.0030 (6) 0.0189 (6) 0.0108 (6)
C7 0.0276 (7) 0.0355 (7) 0.0284 (7) 0.0076 (5) 0.0142 (6) 0.0055 (5)
C8 0.0304 (7) 0.0377 (7) 0.0295 (7) 0.0091 (6) 0.0152 (6) 0.0016 (6)
C9 0.0261 (6) 0.0260 (6) 0.0300 (7) 0.0015 (5) 0.0076 (5) −0.0001 (5)
C10 0.0355 (8) 0.0534 (9) 0.0348 (8) 0.0191 (7) 0.0080 (7) −0.0060 (7)
C11 0.0402 (9) 0.0513 (9) 0.0352 (8) 0.0160 (7) 0.0111 (7) −0.0082 (7)
C12 0.0377 (8) 0.0427 (8) 0.0318 (7) 0.0024 (6) 0.0162 (6) −0.0022 (6)
C13 0.0371 (8) 0.0437 (8) 0.0305 (7) 0.0133 (7) 0.0127 (6) 0.0059 (6)
C14 0.0343 (7) 0.0335 (7) 0.0301 (7) 0.0099 (6) 0.0143 (6) 0.0040 (5)
C15 0.0449 (9) 0.0518 (9) 0.0279 (7) 0.0110 (7) 0.0159 (7) −0.0011 (6)
C16 0.0288 (7) 0.0236 (6) 0.0288 (7) 0.0018 (5) 0.0122 (6) 0.0021 (5)
C17 0.0371 (8) 0.0458 (9) 0.0342 (8) 0.0116 (7) 0.0122 (7) 0.0108 (6)
C18 0.0377 (9) 0.0493 (9) 0.0593 (11) 0.0173 (7) 0.0199 (8) 0.0125 (8)
C19 0.0471 (10) 0.0476 (9) 0.0611 (11) 0.0077 (8) 0.0326 (9) −0.0047 (8)
C20 0.0530 (10) 0.0547 (10) 0.0352 (8) 0.0020 (8) 0.0234 (8) −0.0054 (7)
C21 0.0338 (7) 0.0393 (8) 0.0282 (7) 0.0028 (6) 0.0099 (6) 0.0009 (6)

Geometric parameters (Å, °)

S1—O2 1.4843 (11) C11—H11A 0.9900
S1—C1 1.7529 (14) C11—H11B 0.9900
S1—C16 1.7955 (14) C12—C13 1.519 (2)
O1—C8 1.3706 (17) C12—H12A 0.9900
O1—C7 1.3829 (17) C12—H12B 0.9900
C1—C8 1.3574 (19) C13—C14 1.5239 (19)
C1—C2 1.4494 (18) C13—H13A 0.9900
C2—C7 1.3891 (19) C13—H13B 0.9900
C2—C3 1.3908 (18) C14—H14A 0.9900
C3—C4 1.3931 (18) C14—H14B 0.9900
C3—H3 0.9500 C15—H15A 0.9800
C4—C5 1.4006 (19) C15—H15B 0.9800
C4—C9 1.5112 (19) C15—H15C 0.9800
C5—C6 1.385 (2) C16—C21 1.374 (2)
C5—H5 0.9500 C16—C17 1.380 (2)
C6—C7 1.373 (2) C17—C18 1.382 (2)
C6—H6 0.9500 C17—H17 0.9500
C8—C15 1.485 (2) C18—C19 1.372 (3)
C9—C10 1.530 (2) C18—H18 0.9500
C9—C14 1.5317 (19) C19—C20 1.379 (3)
C9—H9 1.0000 C19—H19 0.9500
C10—C11 1.524 (2) C20—C21 1.385 (2)
C10—H10A 0.9900 C20—H20 0.9500
C10—H10B 0.9900 C21—H21 0.9500
C11—C12 1.511 (2)
O2—S1—C1 107.74 (6) C10—C11—H11B 109.4
O2—S1—C16 106.99 (6) H11A—C11—H11B 108.0
C1—S1—C16 98.62 (6) C11—C12—C13 111.07 (13)
C8—O1—C7 106.49 (10) C11—C12—H12A 109.4
C8—C1—C2 107.37 (12) C13—C12—H12A 109.4
C8—C1—S1 124.25 (11) C11—C12—H12B 109.4
C2—C1—S1 128.29 (10) C13—C12—H12B 109.4
C7—C2—C3 119.49 (12) H12A—C12—H12B 108.0
C7—C2—C1 104.63 (12) C12—C13—C14 111.68 (12)
C3—C2—C1 135.87 (12) C12—C13—H13A 109.3
C2—C3—C4 118.76 (12) C14—C13—H13A 109.3
C2—C3—H3 120.6 C12—C13—H13B 109.3
C4—C3—H3 120.6 C14—C13—H13B 109.3
C3—C4—C5 119.53 (13) H13A—C13—H13B 107.9
C3—C4—C9 120.59 (12) C13—C14—C9 111.88 (12)
C5—C4—C9 119.87 (12) C13—C14—H14A 109.2
C6—C5—C4 122.53 (13) C9—C14—H14A 109.2
C6—C5—H5 118.7 C13—C14—H14B 109.2
C4—C5—H5 118.7 C9—C14—H14B 109.2
C7—C6—C5 116.21 (13) H14A—C14—H14B 107.9
C7—C6—H6 121.9 C8—C15—H15A 109.5
C5—C6—H6 121.9 C8—C15—H15B 109.5
C6—C7—O1 125.85 (12) H15A—C15—H15B 109.5
C6—C7—C2 123.48 (13) C8—C15—H15C 109.5
O1—C7—C2 110.67 (12) H15A—C15—H15C 109.5
C1—C8—O1 110.83 (12) H15B—C15—H15C 109.5
C1—C8—C15 133.47 (14) C21—C16—C17 121.28 (13)
O1—C8—C15 115.70 (12) C21—C16—S1 120.21 (11)
C4—C9—C10 111.77 (11) C17—C16—S1 118.37 (11)
C4—C9—C14 112.05 (11) C16—C17—C18 119.21 (15)
C10—C9—C14 109.62 (12) C16—C17—H17 120.4
C4—C9—H9 107.7 C18—C17—H17 120.4
C10—C9—H9 107.7 C19—C18—C17 120.21 (16)
C14—C9—H9 107.7 C19—C18—H18 119.9
C11—C10—C9 111.62 (13) C17—C18—H18 119.9
C11—C10—H10A 109.3 C18—C19—C20 120.03 (15)
C9—C10—H10A 109.3 C18—C19—H19 120.0
C11—C10—H10B 109.3 C20—C19—H19 120.0
C9—C10—H10B 109.3 C19—C20—C21 120.49 (16)
H10A—C10—H10B 108.0 C19—C20—H20 119.8
C12—C11—C10 111.23 (13) C21—C20—H20 119.8
C12—C11—H11A 109.4 C16—C21—C20 118.77 (15)
C10—C11—H11A 109.4 C16—C21—H21 120.6
C12—C11—H11B 109.4 C20—C21—H21 120.6
O2—S1—C1—C8 131.22 (12) C7—O1—C8—C1 1.01 (15)
C16—S1—C1—C8 −117.76 (13) C7—O1—C8—C15 −179.63 (12)
O2—S1—C1—C2 −45.06 (13) C3—C4—C9—C10 −68.63 (16)
C16—S1—C1—C2 65.96 (13) C5—C4—C9—C10 110.04 (15)
C8—C1—C2—C7 0.77 (15) C3—C4—C9—C14 54.86 (16)
S1—C1—C2—C7 177.55 (11) C5—C4—C9—C14 −126.47 (14)
C8—C1—C2—C3 −179.30 (15) C4—C9—C10—C11 −179.32 (13)
S1—C1—C2—C3 −2.5 (2) C14—C9—C10—C11 55.83 (17)
C7—C2—C3—C4 0.36 (19) C9—C10—C11—C12 −56.99 (19)
C1—C2—C3—C4 −179.57 (14) C10—C11—C12—C13 55.67 (18)
C2—C3—C4—C5 0.07 (19) C11—C12—C13—C14 −54.82 (17)
C2—C3—C4—C9 178.73 (11) C12—C13—C14—C9 55.03 (17)
C3—C4—C5—C6 −0.3 (2) C4—C9—C14—C13 −179.56 (12)
C9—C4—C5—C6 −178.94 (13) C10—C9—C14—C13 −54.87 (16)
C4—C5—C6—C7 0.0 (2) O2—S1—C16—C21 6.99 (13)
C5—C6—C7—O1 179.83 (12) C1—S1—C16—C21 −104.63 (12)
C5—C6—C7—C2 0.4 (2) O2—S1—C16—C17 −168.86 (11)
C8—O1—C7—C6 −179.94 (14) C1—S1—C16—C17 79.52 (12)
C8—O1—C7—C2 −0.49 (15) C21—C16—C17—C18 1.2 (2)
C3—C2—C7—C6 −0.6 (2) S1—C16—C17—C18 177.02 (13)
C1—C2—C7—C6 179.30 (13) C16—C17—C18—C19 −0.4 (3)
C3—C2—C7—O1 179.89 (11) C17—C18—C19—C20 −0.2 (3)
C1—C2—C7—O1 −0.16 (14) C18—C19—C20—C21 0.0 (3)
C2—C1—C8—O1 −1.12 (15) C17—C16—C21—C20 −1.4 (2)
S1—C1—C8—O1 −178.06 (9) S1—C16—C21—C20 −177.15 (12)
C2—C1—C8—C15 179.67 (15) C19—C20—C21—C16 0.8 (2)
S1—C1—C8—C15 2.7 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C15—H15B···O2i 0.98 2.52 3.4516 (19) 159
C21—H21···O2ii 0.95 2.47 3.2793 (18) 144

Symmetry codes: (i) −x+1, −y, −z; (ii) −x+1, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2365).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013705/zl2365sup1.cif

e-67-o1157-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013705/zl2365Isup2.hkl

e-67-o1157-Isup2.hkl (196.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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