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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 13;67(Pt 5):o1125–o1126. doi: 10.1107/S160053681101261X

2-(N-Phenyl­methane­sulfonamido)­ethyl 1H-pyrrole-2-carboxyl­ate

Salman Tariq Khan a,*, Peng Yu b, Aisha Nelofar a, Zaheer Ahmed c, Suchada Chantrapromma d,
PMCID: PMC3089296  PMID: 21754438

Abstract

In the title compound, C14H16N2O4S, the eth­oxy­carbonyl group is nearly planar, with an r.m.s. deviation of 0.0067 Å, and is almost coplanar with the pyrrole ring [dihedral angle = 5.81 (15)°], whereas it is inclined at a dihedral angle of 61.90 (13)° to the phenyl ring. The dihedral angle between the pyrrole and phenyl rings is 56.15 (13)°. In the crystal, centrosymmetrically related mol­ecules are linked into dimers by pairs of N—H⋯O hydrogen bonds, forming rings of R 2 2(10) graph-set motif. The dimers are further connected by weak inter­molecular C—H⋯O hydrogen bonds and C—H⋯π inter­actions, forming layers parallel to the bc plane.

Related literature

For the pharmacological and biological activity of pyrrole-2-carboxyl­ate derivatives and sulfonamides, see: Brienne et al. (1987); Burnham et al. (1998); Fan et al. (2008); Fu et al. (2002); Gupton et al. (1999); Manzanaro et al. (2006); Mayer et al. (2009); Yoshikawa et al. (1993, 1998). For a related structure, see: Khan et al. (2010). For standard bond-length data, see: Allen et al. (1987).graphic file with name e-67-o1125-scheme1.jpg

Experimental

Crystal data

  • C14H16N2O4S

  • M r = 308.36

  • Monoclinic, Inline graphic

  • a = 12.186 (2) Å

  • b = 5.6516 (11) Å

  • c = 22.160 (4) Å

  • β = 104.47 (3)°

  • V = 1477.8 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 153 K

  • 0.32 × 0.08 × 0.06 mm

Data collection

  • Rigaku Saturn CCD area-detector diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.928, T max = 0.986

  • 12044 measured reflections

  • 3499 independent reflections

  • 2726 reflections with I > 2σ(I)

  • R int = 0.050

Refinement

  • R[F 2 > 2σ(F 2)] = 0.059

  • wR(F 2) = 0.152

  • S = 1.06

  • 3499 reflections

  • 196 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.50 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681101261X/rz2576sup1.cif

e-67-o1125-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681101261X/rz2576Isup2.hkl

e-67-o1125-Isup2.hkl (171.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C2–C5/N1 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.92 (4) 1.99 (4) 2.894 (3) 167 (3)
C6—H6B⋯O4ii 0.99 2.53 3.415 (3) 148
C7—H7A⋯O4iii 0.99 2.55 3.406 (3) 145
C7—H7B⋯O1iv 0.99 2.54 3.431 (3) 150
C6—H6ACg1v 0.99 2.91 3.899 (3) 173

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

STK acknowledges funding from the Industrial Linkage Programme of the Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories. PY is grateful to Tianjin University of Science & Technology for a research grant (No. 2009 0431). SC thanks the Prince of Songkla University for generous support through the CMRU. STK also thanks Dr Song Haibin (State Key Laboratory of Elemento-Organic Chemistry, Nankai University) for the data collection.

supplementary crystallographic information

Comment

Pyrrole-2-carboxylate based heterocyclic compounds, either naturally occurring or synthetic, have shown various pharmacological and biological activities such as anticancer (Burnham et al., 1998; Gupton et al., 1999; Fan et al., 2008), antidiabetic, aldose reductase inhibition (Mayer et al., 2009; Manzanaro et al., 2006) anti-inflammatory and analgesic activities (Fu et al., 2002). Likewise, compounds containing the sulfonamide moiety have their own biological importance as antifilarial (Brienne et al., 1987) anti-inflammatory, antipyretic, analgesic and antiallergy agents (Yoshikawa et al., 1993; Yoshikawa et al., 1998) The title compound was synthesized as an intermediate which will be used in search of new potent anti-inflammatory and/or analgesic agents. Its crystal structure analysis was undertaken in order to establish the conformation of the various groups.

Fig. 1 shows the molecular structure of the title compound, in which the ethylcarboxylate unit (C1/C2/O1/O2/C6/C7) is planar with r.m.s. of 0.0067 (2) Å. This unit is almost co-planar with the pyrrole ring whereas is inclined to the benzene ring with dihedral angles of 5.81 (15) and 61.90 (13)°, respectively. The dihedral angle between the pyrrole and benzene rings is 56.15 (13)°. The orientation of the methylsulfonamide group (C14/S1/O3/O3/N2) with respect to the ethylcarboxylate unit can be indicated by the torsion angles S1–N2–C7–C6 = 121.87 (18)° and C14–S1–N2–C7 = 72.67 (18)°. The bond lengths are in normal ranges (Allen et al., 1987) and comparable to those reported for a related structure (Khan et al., 2010).

In the crystal structure (Fig. 2), N—H···O hydrogen interactions (Table 1) link centrosymmetrically related molecules into dimers forming rings of R22(10) graph-set motif. The dimers are further arranged into layers parallel to the bc plane by weak intermolecular C—H···O hydrogen bonds and C—H···π interactions (Table 1).

Experimental

The title compound was prepared by mixing 2-(phenylamino)ethyl-1H-pyrrole-2-carboxylate (1.0 g, 1.8 mmol), triethylamine (0.88 g, 8.8 mmol) and methanesulfonyl chloride (0.1 g, 8.8 mmol) in dichloromethane (6 ml) under nitrogen in sealed tube. The reaction mixture was stirred for 4 h at 273 K. The mixture was poured onto ice, and then sodium bicarbonate (10 ml, 10%) was added and the solution stirred for 10 minutes. The organic layer was separated and the aqueous layer was extracted with dichloromethane. The combined organic layers were dried over MgSO4, filtered and concentrated, yielding the a white precipitate of the title compound. Colourless needle-shaped single crystals of the title compound suitable for X-ray structure determination were recrystalized from dichloromethane by the slow evaporation of the solvent at room temperature after several days.

Refinement

H atom attached to N1 was located in the difference Fourier map and refined isotropically. All other H atoms were placed in calculated positions with d(C—H) = 0.95 Å for aromatic, 0.99 for CH2 and 0.98 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the carrier atom for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 1.13 Å from S1 and the deepest hole is located at 0.75 Å from S1.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The crystal packing of the title compound viewd along the b axis. C—H···O weak interactions are drawn as dashed lines.

Crystal data

C14H16N2O4S F(000) = 648
Mr = 308.36 Dx = 1.386 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3499 reflections
a = 12.186 (2) Å θ = 1.7–27.8°
b = 5.6516 (11) Å µ = 0.24 mm1
c = 22.160 (4) Å T = 153 K
β = 104.47 (3)° Needle, colourless
V = 1477.8 (5) Å3 0.32 × 0.08 × 0.06 mm
Z = 4

Data collection

Rigaku Saturn CCD area-detector diffractometer 3499 independent reflections
Radiation source: rotating anode 2726 reflections with I > 2σ(I)
multilayer Rint = 0.050
Detector resolution: 14.63 pixels mm-1 θmax = 27.8°, θmin = 1.7°
ω and φ scans h = −16→14
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) k = −6→7
Tmin = 0.928, Tmax = 0.986 l = −28→29
12044 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.152 w = 1/[σ2(Fo2) + (0.0745P)2 + 0.5129P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max = 0.001
3499 reflections Δρmax = 0.43 e Å3
196 parameters Δρmin = −0.50 e Å3
0 restraints Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.026 (3)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.19337 (5) 0.19937 (10) 0.28338 (2) 0.02406 (19)
N1 0.1780 (2) 0.9013 (4) −0.01667 (10) 0.0354 (5)
N2 0.19052 (16) 0.2462 (3) 0.21007 (9) 0.0252 (4)
O1 0.01281 (16) 0.7777 (3) 0.04865 (9) 0.0394 (5)
O2 0.12012 (14) 0.4664 (3) 0.08930 (7) 0.0325 (4)
O3 0.29861 (14) 0.2895 (3) 0.32044 (7) 0.0301 (4)
O4 0.08904 (14) 0.2914 (3) 0.29278 (8) 0.0314 (4)
C1 0.0969 (2) 0.6576 (4) 0.05242 (10) 0.0295 (5)
C2 0.1832 (2) 0.7006 (4) 0.01917 (10) 0.0299 (5)
C3 0.2777 (2) 0.5733 (5) 0.01512 (11) 0.0371 (6)
H3 0.3024 0.4271 0.0351 0.045*
C4 0.3301 (3) 0.7006 (5) −0.02406 (13) 0.0449 (7)
H4 0.3972 0.6562 −0.0356 0.054*
C5 0.2671 (2) 0.9020 (5) −0.04295 (12) 0.0423 (7)
H5 0.2834 1.0208 −0.0698 0.051*
C6 0.0391 (2) 0.4147 (4) 0.12552 (11) 0.0304 (5)
H6A −0.0368 0.3842 0.0977 0.036*
H6B 0.0333 0.5495 0.1531 0.036*
C7 0.08226 (19) 0.1984 (4) 0.16350 (11) 0.0280 (5)
H7A 0.0249 0.1447 0.1852 0.034*
H7B 0.0937 0.0696 0.1354 0.034*
C8 0.29508 (19) 0.2205 (4) 0.19055 (10) 0.0231 (5)
C9 0.37363 (19) 0.4032 (4) 0.20276 (10) 0.0263 (5)
H9 0.3599 0.5392 0.2250 0.032*
C10 0.4723 (2) 0.3868 (4) 0.18253 (11) 0.0308 (5)
H10 0.5267 0.5107 0.1913 0.037*
C11 0.4913 (2) 0.1904 (4) 0.14962 (11) 0.0329 (6)
H11 0.5583 0.1806 0.1352 0.040*
C12 0.4133 (2) 0.0074 (5) 0.13752 (11) 0.0341 (6)
H12 0.4270 −0.1277 0.1150 0.041*
C13 0.3151 (2) 0.0214 (4) 0.15835 (10) 0.0295 (5)
H13 0.2619 −0.1048 0.1506 0.035*
C14 0.1928 (2) −0.1101 (4) 0.29289 (11) 0.0316 (5)
H14A 0.2586 −0.1786 0.2814 0.047*
H14B 0.1231 −0.1759 0.2660 0.047*
H14C 0.1962 −0.1478 0.3365 0.047*
H1 0.121 (3) 1.012 (6) −0.0206 (16) 0.065 (10)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0248 (3) 0.0244 (3) 0.0239 (3) 0.0005 (2) 0.0077 (2) −0.0002 (2)
N1 0.0445 (14) 0.0324 (12) 0.0288 (10) −0.0029 (10) 0.0081 (10) 0.0032 (9)
N2 0.0218 (10) 0.0319 (10) 0.0218 (9) −0.0014 (8) 0.0049 (7) 0.0011 (8)
O1 0.0375 (11) 0.0365 (10) 0.0439 (11) 0.0065 (8) 0.0097 (8) 0.0104 (8)
O2 0.0333 (10) 0.0382 (10) 0.0274 (8) 0.0055 (7) 0.0099 (7) 0.0094 (7)
O3 0.0290 (9) 0.0368 (10) 0.0237 (8) −0.0073 (7) 0.0049 (7) −0.0051 (7)
O4 0.0298 (9) 0.0341 (10) 0.0338 (9) 0.0056 (7) 0.0146 (7) 0.0006 (7)
C1 0.0337 (13) 0.0299 (13) 0.0222 (11) −0.0022 (10) 0.0016 (9) −0.0010 (9)
C2 0.0358 (13) 0.0310 (13) 0.0208 (11) −0.0030 (10) 0.0031 (9) −0.0015 (9)
C3 0.0432 (15) 0.0391 (15) 0.0300 (12) 0.0058 (11) 0.0109 (11) 0.0060 (11)
C4 0.0486 (17) 0.0525 (18) 0.0385 (15) 0.0028 (13) 0.0202 (13) 0.0049 (13)
C5 0.0499 (17) 0.0450 (16) 0.0353 (14) −0.0049 (13) 0.0168 (13) 0.0042 (12)
C6 0.0265 (12) 0.0386 (14) 0.0264 (11) 0.0009 (10) 0.0074 (9) 0.0034 (10)
C7 0.0253 (12) 0.0307 (13) 0.0266 (11) −0.0040 (9) 0.0034 (9) 0.0004 (9)
C8 0.0249 (11) 0.0241 (11) 0.0204 (10) 0.0007 (8) 0.0057 (8) 0.0026 (8)
C9 0.0283 (12) 0.0226 (12) 0.0284 (11) −0.0008 (9) 0.0079 (9) 0.0006 (9)
C10 0.0266 (12) 0.0324 (13) 0.0343 (12) −0.0013 (9) 0.0093 (10) 0.0061 (10)
C11 0.0306 (13) 0.0407 (15) 0.0301 (12) 0.0070 (10) 0.0125 (10) 0.0082 (11)
C12 0.0395 (14) 0.0352 (14) 0.0295 (12) 0.0060 (11) 0.0124 (10) −0.0014 (10)
C13 0.0346 (13) 0.0259 (12) 0.0282 (11) −0.0022 (9) 0.0084 (10) −0.0012 (9)
C14 0.0322 (13) 0.0274 (12) 0.0352 (13) 0.0017 (9) 0.0085 (10) 0.0053 (10)

Geometric parameters (Å, °)

S1—O3 1.4325 (17) C6—C7 1.503 (3)
S1—O4 1.4363 (17) C6—H6A 0.9900
S1—N2 1.6376 (19) C6—H6B 0.9900
S1—C14 1.762 (3) C7—H7A 0.9900
N1—C5 1.354 (3) C7—H7B 0.9900
N1—C2 1.377 (3) C8—C13 1.386 (3)
N1—H1 0.92 (3) C8—C9 1.388 (3)
N2—C8 1.452 (3) C9—C10 1.387 (3)
N2—C7 1.483 (3) C9—H9 0.9500
O1—C1 1.215 (3) C10—C11 1.379 (4)
O2—C1 1.342 (3) C10—H10 0.9500
O2—C6 1.450 (3) C11—C12 1.384 (4)
C1—C2 1.447 (3) C11—H11 0.9500
C2—C3 1.379 (3) C12—C13 1.389 (3)
C3—C4 1.399 (4) C12—H12 0.9500
C3—H3 0.9500 C13—H13 0.9500
C4—C5 1.378 (4) C14—H14A 0.9800
C4—H4 0.9500 C14—H14B 0.9800
C5—H5 0.9500 C14—H14C 0.9800
O3—S1—O4 119.10 (11) C7—C6—H6B 110.4
O3—S1—N2 107.77 (10) H6A—C6—H6B 108.6
O4—S1—N2 106.58 (10) N2—C7—C6 111.57 (19)
O3—S1—C14 108.31 (11) N2—C7—H7A 109.3
O4—S1—C14 108.16 (11) C6—C7—H7A 109.3
N2—S1—C14 106.23 (11) N2—C7—H7B 109.3
C5—N1—C2 108.9 (2) C6—C7—H7B 109.3
C5—N1—H1 129 (2) H7A—C7—H7B 108.0
C2—N1—H1 122 (2) C13—C8—C9 120.2 (2)
C8—N2—C7 117.97 (18) C13—C8—N2 121.0 (2)
C8—N2—S1 118.48 (15) C9—C8—N2 118.8 (2)
C7—N2—S1 117.10 (15) C10—C9—C8 119.9 (2)
C1—O2—C6 115.53 (18) C10—C9—H9 120.0
O1—C1—O2 122.5 (2) C8—C9—H9 120.0
O1—C1—C2 125.4 (2) C11—C10—C9 119.9 (2)
O2—C1—C2 112.1 (2) C11—C10—H10 120.1
N1—C2—C3 108.1 (2) C9—C10—H10 120.1
N1—C2—C1 119.8 (2) C10—C11—C12 120.4 (2)
C3—C2—C1 132.1 (2) C10—C11—H11 119.8
C2—C3—C4 106.8 (2) C12—C11—H11 119.8
C2—C3—H3 126.6 C11—C12—C13 120.0 (2)
C4—C3—H3 126.6 C11—C12—H12 120.0
C5—C4—C3 107.9 (2) C13—C12—H12 120.0
C5—C4—H4 126.0 C8—C13—C12 119.6 (2)
C3—C4—H4 126.0 C8—C13—H13 120.2
N1—C5—C4 108.2 (2) C12—C13—H13 120.2
N1—C5—H5 125.9 S1—C14—H14A 109.5
C4—C5—H5 125.9 S1—C14—H14B 109.5
O2—C6—C7 106.41 (18) H14A—C14—H14B 109.5
O2—C6—H6A 110.4 S1—C14—H14C 109.5
C7—C6—H6A 110.4 H14A—C14—H14C 109.5
O2—C6—H6B 110.4 H14B—C14—H14C 109.5
O3—S1—N2—C8 37.3 (2) C3—C4—C5—N1 −0.1 (3)
O4—S1—N2—C8 166.21 (16) C1—O2—C6—C7 −179.25 (19)
C14—S1—N2—C8 −78.62 (19) C8—N2—C7—C6 −86.7 (2)
O3—S1—N2—C7 −171.42 (16) S1—N2—C7—C6 121.87 (18)
O4—S1—N2—C7 −42.50 (19) O2—C6—C7—N2 65.8 (2)
C14—S1—N2—C7 72.67 (18) C7—N2—C8—C13 −47.9 (3)
C6—O2—C1—O1 −1.2 (3) S1—N2—C8—C13 103.1 (2)
C6—O2—C1—C2 178.48 (19) C7—N2—C8—C9 129.8 (2)
C5—N1—C2—C3 0.0 (3) S1—N2—C8—C9 −79.1 (2)
C5—N1—C2—C1 −179.9 (2) C13—C8—C9—C10 0.2 (3)
O1—C1—C2—N1 5.3 (4) N2—C8—C9—C10 −177.6 (2)
O2—C1—C2—N1 −174.4 (2) C8—C9—C10—C11 0.8 (3)
O1—C1—C2—C3 −174.7 (3) C9—C10—C11—C12 −1.1 (4)
O2—C1—C2—C3 5.7 (4) C10—C11—C12—C13 0.2 (4)
N1—C2—C3—C4 0.0 (3) C9—C8—C13—C12 −1.0 (3)
C1—C2—C3—C4 179.9 (3) N2—C8—C13—C12 176.7 (2)
C2—C3—C4—C5 0.1 (3) C11—C12—C13—C8 0.8 (4)
C2—N1—C5—C4 0.1 (3)

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C5/N1 ring.
D—H···A D—H H···A D···A D—H···A
N1—H1···O1i 0.92 (4) 1.99 (4) 2.894 (3) 167 (3)
C6—H6B···O4ii 0.99 2.53 3.415 (3) 148
C7—H7A···O4iii 0.99 2.55 3.406 (3) 145
C7—H7B···O1iv 0.99 2.54 3.431 (3) 150
C6—H6A···Cg1v 0.99 2.91 3.899 (3) 173

Symmetry codes: (i) −x, −y+2, −z; (ii) −x, y+1/2, −z+1/2; (iii) −x, y−1/2, −z+1/2; (iv) x, y−1, z; (v) −x, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2576).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681101261X/rz2576sup1.cif

e-67-o1125-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681101261X/rz2576Isup2.hkl

e-67-o1125-Isup2.hkl (171.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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