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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 22;67(Pt 5):m628. doi: 10.1107/S1600536811014656

Diiodido{2-(morpholin-4-yl)-N-[1-(2-pyrid­yl)ethyl­idene]ethanamine-κ3 N,N′,N′′}zinc

Nura Suleiman Gwaram a, Hamid Khaledi a,*, Hapipah Mohd Ali a
PMCID: PMC3089331  PMID: 21754337

Abstract

In the title compound, [ZnI2(C13H19N3O)], the ZnII ion is five-coordinated in a distorted square-pyramidal geometry, in which the basal plane is defined by three N atoms from the Schiff base ligand and one iodide ion. A second iodide ligand, situated in the apical position, completes the coordination geometry. In the crystal structure, C—H⋯O hydrogen bonds link a pair of mol­ecules around an inversion centre into a dimer.

Related literature

For the structure of an analogous ZnCl2 complex, see: Ikmal Hisham et al. (2011 ▶). For square-pyramidal ZnI2 complexes with N,N′,N′′-tridentate ligands, see: Drew & Hollis (1978 ▶); Yousefi (2010 ▶). For a description of the geometry of complexes with five-coordinated metal ions, see: Addison et al. (1984 ▶).graphic file with name e-67-0m628-scheme1.jpg

Experimental

Crystal data

  • [ZnI2(C13H19N3O)]

  • M r = 552.48

  • Triclinic, Inline graphic

  • a = 8.8874 (3) Å

  • b = 10.3117 (4) Å

  • c = 10.3643 (4) Å

  • α = 68.8810 (18)°

  • β = 81.959 (2)°

  • γ = 66.3990 (17)°

  • V = 811.91 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 5.31 mm−1

  • T = 100 K

  • 0.17 × 0.13 × 0.09 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.465, T max = 0.646

  • 7292 measured reflections

  • 3517 independent reflections

  • 3260 reflections with I > 2σ(I)

  • R int = 0.013

Refinement

  • R[F 2 > 2σ(F 2)] = 0.018

  • wR(F 2) = 0.045

  • S = 1.05

  • 3517 reflections

  • 182 parameters

  • H-atom parameters constrained

  • Δρmax = 0.85 e Å−3

  • Δρmin = −1.23 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014656/hy2422sup1.cif

e-67-0m628-sup1.cif (16KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014656/hy2422Isup2.hkl

e-67-0m628-Isup2.hkl (172.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Zn1—N1 2.205 (2)
Zn1—N2 2.093 (2)
Zn1—N3 2.269 (2)
Zn1—I1 2.6018 (4)
Zn1—I2 2.6506 (4)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C13—H13A⋯O1i 0.99 2.55 3.491 (3) 159

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the University of Malaya for funding this study (FRGS grant No. FP004/2010B).

supplementary crystallographic information

Comment

The title compound (Fig. 1) was obtained via the complexation of ZnII ion with the in situ prepared Schiff base, 2-morpholino-N-[1-(2-pyridyl)ethylidene]ethanamine, and two iodide ions. Similar to what was observed in an analogous ZnCl2 complex (Ikmal Hisham et al., 2011), the Schiff base acts as an N,N',N''-tridentate chelate ligand, along with two halide ligands, make a distorted square-pyramidal geometry around the metal ion (τ = 0.24, Addison et al., 1984). The Zn—I and Zn—N interatomic distances (Table 1) are comparable to the values reported for similar structures (Drew & Hollis, 1978; Yousefi, 2010). In the crystal, a pair of the molecules, related by a symmetry operation -x + 1, -y + 2, -z + 2, are linked through C—H···O hydrogen bonds into a centrosymmetric dimer (Table 2).

Experimental

A mixture of 2-acetylpyridine (0.20 g, 1.65 mmol) and 4-(2-aminoethyl)morpholine (0.21 g, 1.65 mmol) in ethanol (20 ml) was refluxed for 2 h, followed by addition of a solution of zinc(II) acetate dihydrate (0.36 g, 1.65 mmol) and potassium iodide (0.54 g, 3.3 mmol) in a minimum amount of water. The resulting solution was refluxed for 30 min and then left at room temperature. Brown crystals of the title complex were obtained in a few days.

Refinement

H atoms were placed at calculated positions and refined as riding atoms, with C—H = 0.95 (aryl), 0.98 (methyl) and 0.99 (methylene) Å and with Uiso(H) = 1.2(1.5 for methyl)Ueq(C).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

[ZnI2(C13H19N3O)] Z = 2
Mr = 552.48 F(000) = 524
Triclinic, P1 Dx = 2.260 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.8874 (3) Å Cell parameters from 6030 reflections
b = 10.3117 (4) Å θ = 2.3–30.4°
c = 10.3643 (4) Å µ = 5.31 mm−1
α = 68.8810 (18)° T = 100 K
β = 81.959 (2)° Block, brown
γ = 66.3990 (17)° 0.17 × 0.13 × 0.09 mm
V = 811.91 (6) Å3

Data collection

Bruker APEXII CCD diffractometer 3517 independent reflections
Radiation source: fine-focus sealed tube 3260 reflections with I > 2σ(I)
graphite Rint = 0.013
φ and ω scans θmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −11→11
Tmin = 0.465, Tmax = 0.646 k = −13→13
7292 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.045 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0197P)2 + 1.3278P] where P = (Fo2 + 2Fc2)/3
3517 reflections (Δ/σ)max = 0.002
182 parameters Δρmax = 0.85 e Å−3
0 restraints Δρmin = −1.23 e Å−3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Zn1 0.77476 (4) 0.81170 (3) 0.66161 (3) 0.01267 (7)
I1 0.64389 (2) 1.103488 (18) 0.584395 (17) 0.01508 (5)
I2 1.05998 (2) 0.694938 (19) 0.791314 (17) 0.01566 (5)
O1 0.3717 (2) 0.8562 (2) 1.0506 (2) 0.0212 (4)
N1 0.8699 (3) 0.8016 (2) 0.4558 (2) 0.0135 (4)
N2 0.7235 (3) 0.6403 (2) 0.6380 (2) 0.0137 (4)
N3 0.6122 (3) 0.7619 (2) 0.8469 (2) 0.0137 (4)
C1 0.9527 (3) 0.8810 (3) 0.3702 (3) 0.0161 (5)
H1 0.9697 0.9537 0.3959 0.019*
C2 1.0153 (3) 0.8615 (3) 0.2446 (3) 0.0181 (5)
H2 1.0767 0.9176 0.1868 0.022*
C3 0.9859 (3) 0.7587 (3) 0.2062 (3) 0.0190 (6)
H3 1.0239 0.7455 0.1197 0.023*
C4 0.9002 (3) 0.6744 (3) 0.2951 (3) 0.0165 (5)
H4 0.8797 0.6024 0.2709 0.020*
C5 0.8456 (3) 0.6981 (3) 0.4199 (3) 0.0145 (5)
C6 0.7574 (3) 0.6108 (3) 0.5253 (3) 0.0139 (5)
C7 0.7137 (3) 0.5006 (3) 0.4920 (3) 0.0181 (5)
H7A 0.6732 0.4412 0.5754 0.027*
H7B 0.8112 0.4336 0.4582 0.027*
H7C 0.6280 0.5547 0.4204 0.027*
C8 0.6366 (3) 0.5663 (3) 0.7513 (3) 0.0161 (5)
H8A 0.6837 0.4566 0.7693 0.019*
H8B 0.5189 0.6052 0.7275 0.019*
C9 0.6557 (3) 0.5993 (3) 0.8785 (3) 0.0150 (5)
H9A 0.5839 0.5643 0.9531 0.018*
H9B 0.7707 0.5435 0.9119 0.018*
C10 0.4339 (3) 0.8512 (3) 0.8159 (3) 0.0157 (5)
H10A 0.4008 0.8254 0.7440 0.019*
H10B 0.4152 0.9594 0.7782 0.019*
C11 0.3273 (3) 0.8231 (3) 0.9429 (3) 0.0177 (5)
H11A 0.2107 0.8864 0.9174 0.021*
H11B 0.3391 0.7166 0.9766 0.021*
C12 0.5400 (3) 0.7684 (3) 1.0885 (3) 0.0188 (6)
H12A 0.5561 0.6608 1.1276 0.023*
H12B 0.5690 0.7960 1.1610 0.023*
C13 0.6531 (3) 0.7918 (3) 0.9652 (3) 0.0168 (5)
H13A 0.6466 0.8967 0.9338 0.020*
H13B 0.7676 0.7247 0.9950 0.020*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Zn1 0.01377 (14) 0.01207 (14) 0.01168 (14) −0.00432 (11) 0.00086 (11) −0.00440 (11)
I1 0.01607 (9) 0.01218 (8) 0.01448 (9) −0.00349 (6) 0.00078 (6) −0.00401 (6)
I2 0.01406 (9) 0.01676 (9) 0.01511 (9) −0.00421 (7) −0.00121 (6) −0.00553 (7)
O1 0.0184 (10) 0.0264 (11) 0.0200 (10) −0.0062 (8) 0.0039 (8) −0.0130 (9)
N1 0.0131 (10) 0.0134 (10) 0.0120 (10) −0.0034 (8) 0.0003 (8) −0.0039 (8)
N2 0.0130 (10) 0.0110 (10) 0.0147 (11) −0.0028 (8) −0.0011 (8) −0.0033 (8)
N3 0.0150 (11) 0.0130 (10) 0.0116 (10) −0.0047 (9) 0.0001 (8) −0.0032 (8)
C1 0.0148 (12) 0.0163 (12) 0.0164 (13) −0.0051 (10) −0.0007 (10) −0.0051 (10)
C2 0.0142 (12) 0.0194 (13) 0.0178 (13) −0.0053 (11) 0.0010 (10) −0.0047 (11)
C3 0.0171 (13) 0.0214 (14) 0.0138 (13) −0.0024 (11) 0.0017 (10) −0.0067 (11)
C4 0.0153 (13) 0.0178 (13) 0.0160 (13) −0.0034 (10) −0.0007 (10) −0.0084 (11)
C5 0.0108 (12) 0.0140 (12) 0.0160 (13) −0.0014 (10) −0.0011 (9) −0.0053 (10)
C6 0.0116 (12) 0.0123 (12) 0.0159 (13) −0.0012 (10) −0.0012 (9) −0.0057 (10)
C7 0.0187 (13) 0.0189 (13) 0.0185 (14) −0.0070 (11) 0.0010 (10) −0.0085 (11)
C8 0.0176 (13) 0.0155 (12) 0.0165 (13) −0.0077 (10) 0.0038 (10) −0.0064 (10)
C9 0.0167 (13) 0.0123 (12) 0.0135 (13) −0.0048 (10) 0.0009 (10) −0.0028 (10)
C10 0.0145 (12) 0.0169 (12) 0.0148 (13) −0.0042 (10) 0.0003 (10) −0.0061 (10)
C11 0.0151 (13) 0.0192 (13) 0.0186 (14) −0.0055 (11) 0.0020 (10) −0.0079 (11)
C12 0.0183 (13) 0.0256 (14) 0.0123 (13) −0.0071 (11) 0.0008 (10) −0.0076 (11)
C13 0.0181 (13) 0.0197 (13) 0.0124 (13) −0.0064 (11) 0.0018 (10) −0.0067 (10)

Geometric parameters (Å, °)

Zn1—N1 2.205 (2) C4—H4 0.9500
Zn1—N2 2.093 (2) C5—C6 1.495 (4)
Zn1—N3 2.269 (2) C6—C7 1.495 (4)
Zn1—I1 2.6018 (4) C7—H7A 0.9800
Zn1—I2 2.6506 (4) C7—H7B 0.9800
O1—C11 1.423 (3) C7—H7C 0.9800
O1—C12 1.426 (3) C8—C9 1.521 (4)
N1—C1 1.332 (3) C8—H8A 0.9900
N1—C5 1.349 (3) C8—H8B 0.9900
N2—C6 1.277 (3) C9—H9A 0.9900
N2—C8 1.459 (3) C9—H9B 0.9900
N3—C9 1.479 (3) C10—C11 1.521 (4)
N3—C13 1.490 (3) C10—H10A 0.9900
N3—C10 1.491 (3) C10—H10B 0.9900
C1—C2 1.394 (4) C11—H11A 0.9900
C1—H1 0.9500 C11—H11B 0.9900
C2—C3 1.380 (4) C12—C13 1.521 (4)
C2—H2 0.9500 C12—H12A 0.9900
C3—C4 1.394 (4) C12—H12B 0.9900
C3—H3 0.9500 C13—H13A 0.9900
C4—C5 1.387 (4) C13—H13B 0.9900
N2—Zn1—N1 74.71 (8) C6—C7—H7B 109.5
N2—Zn1—N3 78.31 (8) H7A—C7—H7B 109.5
N1—Zn1—N3 151.54 (8) C6—C7—H7C 109.5
N2—Zn1—I1 137.01 (6) H7A—C7—H7C 109.5
N1—Zn1—I1 95.53 (6) H7B—C7—H7C 109.5
N3—Zn1—I1 98.03 (6) N2—C8—C9 107.5 (2)
N2—Zn1—I2 109.52 (6) N2—C8—H8A 110.2
N1—Zn1—I2 98.21 (6) C9—C8—H8A 110.2
N3—Zn1—I2 99.18 (6) N2—C8—H8B 110.2
I1—Zn1—I2 113.325 (12) C9—C8—H8B 110.2
C11—O1—C12 110.8 (2) H8A—C8—H8B 108.5
C1—N1—C5 118.9 (2) N3—C9—C8 111.1 (2)
C1—N1—Zn1 126.70 (18) N3—C9—H9A 109.4
C5—N1—Zn1 114.34 (17) C8—C9—H9A 109.4
C6—N2—C8 122.6 (2) N3—C9—H9B 109.4
C6—N2—Zn1 120.65 (18) C8—C9—H9B 109.4
C8—N2—Zn1 116.61 (16) H9A—C9—H9B 108.0
C9—N3—C13 111.1 (2) N3—C10—C11 112.5 (2)
C9—N3—C10 112.5 (2) N3—C10—H10A 109.1
C13—N3—C10 107.4 (2) C11—C10—H10A 109.1
C9—N3—Zn1 100.98 (15) N3—C10—H10B 109.1
C13—N3—Zn1 111.80 (16) C11—C10—H10B 109.1
C10—N3—Zn1 113.10 (15) H10A—C10—H10B 107.8
N1—C1—C2 122.6 (3) O1—C11—C10 111.4 (2)
N1—C1—H1 118.7 O1—C11—H11A 109.3
C2—C1—H1 118.7 C10—C11—H11A 109.3
C3—C2—C1 118.3 (3) O1—C11—H11B 109.3
C3—C2—H2 120.8 C10—C11—H11B 109.3
C1—C2—H2 120.8 H11A—C11—H11B 108.0
C2—C3—C4 119.6 (3) O1—C12—C13 111.7 (2)
C2—C3—H3 120.2 O1—C12—H12A 109.3
C4—C3—H3 120.2 C13—C12—H12A 109.3
C5—C4—C3 118.4 (3) O1—C12—H12B 109.3
C5—C4—H4 120.8 C13—C12—H12B 109.3
C3—C4—H4 120.8 H12A—C12—H12B 107.9
N1—C5—C4 122.1 (2) N3—C13—C12 113.3 (2)
N1—C5—C6 114.8 (2) N3—C13—H13A 108.9
C4—C5—C6 123.1 (2) C12—C13—H13A 108.9
N2—C6—C5 115.4 (2) N3—C13—H13B 108.9
N2—C6—C7 125.4 (2) C12—C13—H13B 108.9
C5—C6—C7 119.2 (2) H13A—C13—H13B 107.7
C6—C7—H7A 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C13—H13A···O1i 0.99 2.55 3.491 (3) 159

Symmetry codes: (i) −x+1, −y+2, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2422).

References

  1. Addison, A. W., Rao, T. N., Reedijk, J., Rijn, V. J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.
  2. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Drew, M. G. B. & Hollis, S. (1978). J. Chem. Soc. Dalton Trans. pp. 511–516.
  5. Ikmal Hisham, N. A., Suleiman Gwaram, N., Khaledi, H. & Mohd Ali, H. (2011). Acta Cryst. E67, m55. [DOI] [PMC free article] [PubMed]
  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
  9. Yousefi, M. (2010). Acta Cryst. E66, m1600–m1601. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014656/hy2422sup1.cif

e-67-0m628-sup1.cif (16KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014656/hy2422Isup2.hkl

e-67-0m628-Isup2.hkl (172.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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