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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Apr 13;67(Pt 5):o1114. doi: 10.1107/S1600536811012918

Ethyl 2-[3-(3,5-Dinitrobenzo­yl)thio­ureido]benzoate

Sohail Saeed a,*, Naghmana Rashid a, Moazzam H Bhatti a, Wing-Tak Wong b
PMCID: PMC3089348  PMID: 21754430

Abstract

In the title compound, C17H14N4O7S, the dihedral angle between the two benzene rings is 9.04 (15)°. The centroid–centroid distance of 3.9825 (19) Å between nearly parallel benzene rings of adjacent mol­ecules suggests the existence of π-π stacking. Inter­molecular and intra-mol­ecular N—H⋯O hydrogen bonding is present in the structure. The eth­oxy group is disordered over two sets of sites with an occupancy ratio of 0.580 (15):0.420 (15). The crystal studied was an inversion twin.

Related literature

For background to the chemistry of thiourea derivatives and their bioloical activity, and a related structure, see: Saeed et al. (2010).graphic file with name e-67-o1114-scheme1.jpg

Experimental

Crystal data

  • C17H14N4O7S

  • M r = 418.38

  • Monoclinic, Inline graphic

  • a = 11.7264 (19) Å

  • b = 16.617 (3) Å

  • c = 9.9630 (16) Å

  • β = 101.522 (2)°

  • V = 1902.3 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 299 K

  • 0.27 × 0.16 × 0.08 mm

Data collection

  • Bruker SMART 1000 CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004) T min = 0.943, T max = 0.983

  • 4944 measured reflections

  • 3011 independent reflections

  • 2727 reflections with I > 2σ(I)

  • R int = 0.014

Refinement

  • R[F 2 > 2σ(F 2)] = 0.037

  • wR(F 2) = 0.095

  • S = 1.10

  • 3011 reflections

  • 301 parameters

  • 42 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.24 e Å−3

  • Absolute structure: Flack (1983), 1340 Friedel pairs

  • Flack parameter: 0.39 (8)

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811012918/xu5177sup1.cif

e-67-o1114-sup1.cif (19.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012918/xu5177Isup2.hkl

e-67-o1114-Isup2.hkl (147.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O2 0.91 (3) 1.95 (3) 2.672 (3) 134 (2)
N1—H1⋯O3 0.91 (3) 2.01 (3) 2.700 (3) 131 (2)
N2—H2⋯O3i 0.77 (3) 2.32 (3) 3.086 (3) 172 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors are grateful to Allama Iqbal Open University, Islamabad, Pakistan, for the allocation of research and analytical laboratory facilities.

supplementary crystallographic information

Comment

The background to this study has been set in our previous work on the structural chemistry of N,N'-disubstituted thiourea (Saeed et al., 2010). Herein, as a continuation of these studies, the structure of the title compound, (I), C17H14N4O7S, is described.

The compound is slightly twisted. The nitro groups are 3.9 (5)° and 17 (1)° from the phenyl ring plane of C10—C15. The thiourea plane is making a dihedral angle of 5.3 (2)° with the amido group and makes a dihedral angle of 31.35 (17)° with the phenyl ring plane of C2—C7.

There are inter-molecular N—H···O H-bond interactions which link the molecules to form 1-D chain in the crystal lattice. There are also weak π···π between neighbouring rings in the crystal lattice.

Experimental

A solution of 3,5-dinitrobenzoyl chloride (0.01 mol) in anhydrous acetone (75 ml) and 3% tetrabutylammonium bromide (TBAB) as a phase-transfer catalyst (PTC) in anhydrous acetone was added dropwise to a suspension of dry potassium thiocyanate (0.01 mol) in acetone (50 ml) and the reaction mixture was refluxed for 50 min. After cooling to room temperature, a solution of ethyl-orthoamino benzoate (0.01 mol) in anhydrous acetone (25 ml) was added dropwise and the resulting mixture refluxed for 3 h. Hydrochloric acid (0.1 N, 300 ml) was added, and the solution was filtered. The solid product was washed with water and purified by re-crystallization from ethyl acetate.

Refinement

N-bound H-atoms were located in a difference Fourier map and refined isotropically. Other H atoms were placed at geometrical positions with C—H = 0.93–0.97 Å and refined using riding model with Uiso(H) =1.2Ueq(C). The ethoxy group is disordered over two sites, the occupancy ratio was refined to 0.580 (15):0.420 (15). Distance and displacement restraints were used for the disordered components.

Figures

Fig. 1.

Fig. 1.

The ORTEP plot of the compound was shown at 50% probability thermal ellipsoids with the atom numbering scheme (only the major component was shown).

Fig. 2.

Fig. 2.

Packing diagram of the title compound viewed down the a axis.

Crystal data

C17H14N4O7S F(000) = 864
Mr = 418.38 Dx = 1.461 Mg m3
Monoclinic, Cc Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2yc Cell parameters from 6458 reflections
a = 11.7264 (19) Å θ = 2.1–25.0°
b = 16.617 (3) Å µ = 0.22 mm1
c = 9.9630 (16) Å T = 299 K
β = 101.522 (2)° Block, yellow
V = 1902.3 (5) Å3 0.27 × 0.16 × 0.08 mm
Z = 4

Data collection

Bruker SMART 1000 CCD diffractometer 3011 independent reflections
Radiation source: fine-focus sealed tube 2727 reflections with I > 2σ(I)
graphite Rint = 0.014
ω and φ scans θmax = 25.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) h = −13→13
Tmin = 0.943, Tmax = 0.983 k = −19→15
4944 measured reflections l = −11→11

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.095 w = 1/[σ2(Fo2) + (0.0536P)2 + 0.3273P] where P = (Fo2 + 2Fc2)/3
S = 1.10 (Δ/σ)max < 0.001
3011 reflections Δρmax = 0.22 e Å3
301 parameters Δρmin = −0.24 e Å3
42 restraints Absolute structure: Flack (1983), 1340 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.39 (8)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 0.94150 (8) 0.19793 (4) 0.68183 (8) 0.0759 (3)
O2 0.8103 (2) 0.05570 (13) 1.0967 (3) 0.0866 (7)
O3 0.99391 (19) −0.01499 (10) 0.97679 (18) 0.0663 (5)
O4 1.0187 (3) −0.31100 (14) 0.9255 (4) 0.1022 (8)
O5 1.1263 (3) −0.35915 (14) 0.7937 (3) 0.1095 (10)
O6 1.2496 (4) −0.1832 (2) 0.4646 (3) 0.1355 (14)
O7 1.2710 (4) −0.0571 (3) 0.5114 (4) 0.1459 (15)
N1 0.9176 (2) 0.13747 (12) 0.9269 (2) 0.0543 (5)
H1 0.911 (2) 0.0912 (17) 0.974 (3) 0.064 (8)*
H2 0.997 (2) 0.0472 (15) 0.704 (3) 0.045 (7)*
N2 0.9902 (2) 0.05353 (12) 0.7789 (2) 0.0555 (5)
N3 1.0798 (3) −0.30348 (14) 0.8423 (3) 0.0773 (8)
N4 1.2402 (3) −0.1244 (3) 0.5338 (3) 0.0976 (10)
C1 0.7736 (3) 0.11786 (17) 1.1281 (3) 0.0647 (7)
C2 0.8103 (2) 0.19844 (15) 1.0865 (3) 0.0563 (6)
C3 0.7770 (3) 0.26756 (18) 1.1485 (3) 0.0713 (8)
H3 0.7296 0.2626 1.2125 0.086*
C4 0.8124 (4) 0.3418 (2) 1.1176 (4) 0.0842 (10)
H4 0.7885 0.3870 1.1596 0.101*
C5 0.8830 (3) 0.35007 (17) 1.0248 (3) 0.0782 (9)
H5 0.9080 0.4010 1.0051 0.094*
C6 0.9179 (3) 0.28322 (16) 0.9596 (3) 0.0657 (7)
H6 0.9662 0.2896 0.8968 0.079*
C7 0.8809 (2) 0.20717 (14) 0.9882 (2) 0.0531 (6)
C8 0.9476 (2) 0.13033 (14) 0.8043 (3) 0.0525 (6)
C9 1.0156 (2) −0.01157 (13) 0.8622 (2) 0.0518 (6)
C10 1.0713 (2) −0.08065 (14) 0.8043 (3) 0.0539 (6)
C11 1.0528 (2) −0.15737 (14) 0.8509 (3) 0.0555 (6)
H11 1.0103 −0.1650 0.9193 0.067*
C12 1.0991 (2) −0.22190 (15) 0.7933 (3) 0.0595 (7)
C13 1.1609 (3) −0.21360 (18) 0.6905 (3) 0.0695 (8)
H13 1.1890 −0.2582 0.6508 0.083*
C14 1.1797 (3) −0.1366 (2) 0.6489 (3) 0.0677 (8)
C15 1.1379 (3) −0.07002 (16) 0.7053 (3) 0.0618 (7)
H15 1.1542 −0.0186 0.6775 0.074*
O1 0.7136 (10) 0.1247 (5) 1.2262 (9) 0.083 (2) 0.580 (15)
C16 0.6730 (10) 0.0532 (7) 1.2838 (13) 0.113 (4) 0.580 (15)
H16A 0.6931 0.0548 1.3830 0.135* 0.580 (15)
H16B 0.7077 0.0056 1.2523 0.135* 0.580 (15)
C17 0.5404 (10) 0.0522 (6) 1.2345 (19) 0.161 (6) 0.580 (15)
H17A 0.5070 0.0125 1.2851 0.193* 0.580 (15)
H17B 0.5219 0.0392 1.1387 0.193* 0.580 (15)
H17C 0.5093 0.1042 1.2489 0.193* 0.580 (15)
O1' 0.6758 (12) 0.1178 (7) 1.1805 (14) 0.085 (3) 0.420 (15)
C16' 0.6436 (15) 0.0411 (7) 1.2287 (14) 0.084 (4) 0.420 (15)
H16C 0.7119 0.0073 1.2549 0.101* 0.420 (15)
H16D 0.5889 0.0139 1.1571 0.101* 0.420 (15)
C17' 0.5883 (19) 0.0568 (8) 1.3511 (18) 0.134 (6) 0.420 (15)
H17D 0.5738 0.0065 1.3920 0.161* 0.420 (15)
H17E 0.5162 0.0850 1.3219 0.161* 0.420 (15)
H17F 0.6399 0.0888 1.4169 0.161* 0.420 (15)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.1117 (6) 0.0590 (4) 0.0655 (4) 0.0263 (4) 0.0381 (4) 0.0158 (3)
O2 0.1105 (17) 0.0589 (12) 0.1056 (17) 0.0112 (11) 0.0580 (14) 0.0120 (11)
O3 0.1054 (16) 0.0478 (10) 0.0498 (10) 0.0112 (9) 0.0252 (10) −0.0004 (7)
O4 0.131 (2) 0.0570 (13) 0.122 (2) −0.0046 (13) 0.031 (2) 0.0083 (13)
O5 0.118 (2) 0.0524 (12) 0.153 (3) 0.0257 (13) 0.0147 (19) −0.0192 (14)
O6 0.172 (3) 0.163 (3) 0.0823 (18) 0.073 (3) 0.052 (2) −0.0065 (18)
O7 0.179 (4) 0.131 (3) 0.163 (3) 0.028 (3) 0.119 (3) 0.026 (2)
N1 0.0734 (15) 0.0413 (10) 0.0509 (12) 0.0056 (9) 0.0185 (10) −0.0003 (8)
N2 0.0776 (15) 0.0480 (11) 0.0434 (12) 0.0094 (10) 0.0178 (11) −0.0029 (9)
N3 0.0820 (18) 0.0479 (13) 0.092 (2) 0.0105 (12) −0.0056 (16) −0.0079 (13)
N4 0.099 (2) 0.123 (3) 0.0795 (19) 0.049 (2) 0.0396 (17) 0.0068 (19)
C1 0.076 (2) 0.0658 (17) 0.0559 (15) 0.0108 (14) 0.0209 (14) 0.0059 (12)
C2 0.0635 (17) 0.0569 (14) 0.0459 (13) 0.0114 (11) 0.0046 (12) −0.0053 (10)
C3 0.081 (2) 0.0679 (18) 0.0663 (18) 0.0144 (14) 0.0178 (16) −0.0096 (14)
C4 0.103 (3) 0.0639 (19) 0.086 (2) 0.0187 (17) 0.0186 (19) −0.0250 (16)
C5 0.103 (2) 0.0453 (14) 0.084 (2) 0.0031 (14) 0.0121 (18) −0.0134 (13)
C6 0.080 (2) 0.0526 (14) 0.0644 (17) −0.0012 (12) 0.0144 (15) −0.0065 (12)
C7 0.0631 (16) 0.0459 (12) 0.0478 (13) 0.0070 (10) 0.0049 (12) −0.0029 (10)
C8 0.0577 (15) 0.0476 (13) 0.0520 (13) 0.0034 (10) 0.0100 (11) −0.0010 (10)
C9 0.0643 (17) 0.0453 (13) 0.0462 (14) 0.0029 (10) 0.0119 (12) −0.0023 (10)
C10 0.0649 (17) 0.0507 (13) 0.0445 (12) 0.0062 (11) 0.0069 (12) −0.0030 (10)
C11 0.0637 (17) 0.0486 (13) 0.0516 (13) 0.0047 (11) 0.0056 (12) −0.0062 (10)
C12 0.0622 (17) 0.0462 (13) 0.0641 (17) 0.0098 (11) −0.0015 (14) −0.0033 (11)
C13 0.0718 (19) 0.0740 (18) 0.0574 (16) 0.0290 (14) 0.0001 (14) −0.0162 (14)
C14 0.0655 (18) 0.082 (2) 0.0568 (16) 0.0240 (14) 0.0151 (14) 0.0023 (14)
C15 0.0686 (18) 0.0592 (14) 0.0581 (15) 0.0113 (13) 0.0138 (13) 0.0029 (12)
O1 0.103 (6) 0.083 (3) 0.075 (4) 0.006 (3) 0.043 (4) 0.008 (3)
C16 0.130 (8) 0.116 (7) 0.104 (7) −0.012 (5) 0.053 (6) 0.018 (5)
C17 0.191 (12) 0.086 (5) 0.212 (14) −0.002 (6) 0.056 (10) 0.002 (7)
O1' 0.087 (6) 0.081 (4) 0.093 (7) 0.005 (4) 0.035 (5) −0.008 (4)
C16' 0.090 (7) 0.070 (5) 0.108 (8) −0.013 (4) 0.055 (6) 0.007 (5)
C17' 0.209 (14) 0.092 (7) 0.135 (10) 0.039 (8) 0.116 (10) 0.024 (7)

Geometric parameters (Å, °)

S1—C8 1.649 (2) C6—C7 1.385 (4)
O2—C1 1.185 (3) C6—H6 0.9300
O3—C9 1.219 (3) C9—C10 1.493 (3)
O4—N3 1.205 (4) C10—C15 1.386 (4)
O5—N3 1.222 (4) C10—C11 1.388 (3)
O6—N4 1.213 (4) C11—C12 1.377 (4)
O7—N4 1.210 (5) C11—H11 0.9300
N1—C8 1.342 (3) C12—C13 1.375 (4)
N1—C7 1.416 (3) C13—C14 1.376 (5)
N1—H1 0.91 (3) C13—H13 0.9300
N2—C9 1.360 (3) C14—C15 1.375 (4)
N2—C8 1.412 (3) C15—H15 0.9300
N2—H2 0.77 (3) O1—C16 1.442 (8)
N3—C12 1.474 (4) C16—C17 1.535 (9)
N4—C14 1.478 (4) C16—H16A 0.9700
C1—O1 1.318 (10) C16—H16B 0.9700
C1—O1' 1.351 (14) C17—H17A 0.9600
C1—C2 1.490 (4) C17—H17B 0.9600
C2—C3 1.396 (4) C17—H17C 0.9600
C2—C7 1.410 (4) O1'—C16' 1.440 (9)
C3—C4 1.356 (5) C16'—C17' 1.514 (9)
C3—H3 0.9300 C16'—H16C 0.9700
C4—C5 1.365 (5) C16'—H16D 0.9700
C4—H4 0.9300 C17'—H17D 0.9600
C5—C6 1.389 (4) C17'—H17E 0.9600
C5—H5 0.9300 C17'—H17F 0.9600
C8—N1—C7 128.5 (2) N2—C9—C10 115.8 (2)
C8—N1—H1 117.1 (18) C15—C10—C11 120.2 (2)
C7—N1—H1 114.0 (18) C15—C10—C9 122.0 (2)
C9—N2—C8 130.7 (2) C11—C10—C9 117.9 (2)
C9—N2—H2 115.4 (18) C12—C11—C10 118.4 (3)
C8—N2—H2 113.8 (19) C12—C11—H11 120.8
O4—N3—O5 124.6 (3) C10—C11—H11 120.8
O4—N3—C12 118.4 (2) C13—C12—C11 122.8 (3)
O5—N3—C12 117.1 (3) C13—C12—N3 118.5 (2)
O7—N4—O6 125.1 (4) C11—C12—N3 118.6 (3)
O7—N4—C14 118.6 (3) C12—C13—C14 117.2 (2)
O6—N4—C14 116.2 (4) C12—C13—H13 121.4
O2—C1—O1 123.2 (5) C14—C13—H13 121.4
O2—C1—O1' 118.9 (6) C15—C14—C13 122.3 (3)
O2—C1—C2 124.7 (3) C15—C14—N4 118.1 (3)
O1—C1—C2 110.8 (4) C13—C14—N4 119.5 (3)
O1'—C1—C2 115.0 (5) C14—C15—C10 119.0 (3)
C3—C2—C7 118.5 (2) C14—C15—H15 120.5
C3—C2—C1 119.6 (3) C10—C15—H15 120.5
C7—C2—C1 121.9 (2) C1—O1—C16 119.4 (9)
C4—C3—C2 121.5 (3) O1—C16—C17 106.0 (9)
C4—C3—H3 119.2 O1—C16—H16A 110.5
C2—C3—H3 119.2 C17—C16—H16A 110.5
C3—C4—C5 120.0 (3) O1—C16—H16B 110.5
C3—C4—H4 120.0 C17—C16—H16B 110.5
C5—C4—H4 120.0 H16A—C16—H16B 108.7
C4—C5—C6 120.7 (3) C1—O1'—C16' 115.3 (10)
C4—C5—H5 119.6 O1'—C16'—C17' 107.4 (10)
C6—C5—H5 119.6 O1'—C16'—H16C 110.2
C7—C6—C5 120.0 (3) C17'—C16'—H16C 110.2
C7—C6—H6 120.0 O1'—C16'—H16D 110.2
C5—C6—H6 120.0 C17'—C16'—H16D 110.2
C6—C7—C2 119.3 (2) H16C—C16'—H16D 108.5
C6—C7—N1 121.5 (2) C16'—C17'—H17D 109.5
C2—C7—N1 119.1 (2) C16'—C17'—H17E 109.5
N1—C8—N2 114.2 (2) H17D—C17'—H17E 109.5
N1—C8—S1 129.22 (19) C16'—C17'—H17F 109.5
N2—C8—S1 116.62 (19) H17D—C17'—H17F 109.5
O3—C9—N2 123.2 (2) H17E—C17'—H17F 109.5
O3—C9—C10 121.0 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O2 0.91 (3) 1.95 (3) 2.672 (3) 134 (2)
N1—H1···O3 0.91 (3) 2.01 (3) 2.700 (3) 131 (2)
N2—H2···O3i 0.77 (3) 2.32 (3) 3.086 (3) 172 (2)

Symmetry codes: (i) x, −y, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5177).

References

  1. Bruker. (1998). SMART, Madison, Wisconsin, USA.
  2. Bruker. (2006). SAINT, Madison, Wisconsin, USA.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Johnson, C. K. (1976). ORTEPII Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA.
  5. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  6. Saeed, S., Rashid, N. & Wong, W.-T. (2010). Acta Cryst. E66, o980. [DOI] [PMC free article] [PubMed]
  7. Sheldrick, G. M. (2004). SADABS, University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811012918/xu5177sup1.cif

e-67-o1114-sup1.cif (19.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012918/xu5177Isup2.hkl

e-67-o1114-Isup2.hkl (147.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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