Abstract
In the title compound, C12H12ClN3O5, the piperidine ring adopts a chair conformation. One of the nitro groups is almost coplanar with the aromatic ring [O—N—C—C = −1.4 (2)°], whereas the other one is significantly twisted out of the ring plane [O—N—C—C = 34.7 (2)°]. The crystal packing is stabilized by intermolecular π–π stacking interactions with centroid–centroid distances of 3.579 (3) Å.
Related literature
For the biological activity of benzamide derivatives, see: Christophe et al. (2009 ▶).
Experimental
Crystal data
C12H12ClN3O5
M r = 313.70
Orthorhombic,
a = 10.7864 (3) Å
b = 11.1264 (3) Å
c = 21.9775 (5) Å
V = 2637.60 (11) Å3
Z = 8
Mo Kα radiation
μ = 0.32 mm−1
T = 150 K
0.40 × 0.38 × 0.20 mm
Data collection
Oxford Diffraction Xcalibur Eos diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.979, T max = 1.0
6722 measured reflections
2696 independent reflections
2240 reflections with I > 2σ(I)
R int = 0.021
Refinement
R[F 2 > 2σ(F 2)] = 0.033
wR(F 2) = 0.077
S = 1.05
2696 reflections
238 parameters
All H-atom parameters refined
Δρmax = 0.25 e Å−3
Δρmin = −0.24 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811011469/bt5492sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011469/bt5492Isup2.hkl
Acknowledgments
We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.
supplementary crystallographic information
Comment
Benzamide derivatives are of great importance owing to their antibacterial properties (Christophe et al., 2009). The title compound is one of the key intermediates in our synthetic investigations of antibacterial drugs.
The piperidine ring adopts a chair conformation. As shown in Fig.1, the amide group forms a dihedral angles of 75.96 (5)° and 51.61 (9)° with the benzene ring and the piperidine ring, respectively. The crystal packing is strengthened by intermolecular π–π stacking interaction with centroid–centroid distances of 3.579 (3) Å.
Experimental
A solution of 3.42 g (12.9 mmol) of 2-chloro-3,5-dinitrobenzoyl chloride in 20 ml of dichloromethane was added to a solution of 1.097 g (12.9 mmol) piperidine with a catalyst of 1.82 g (17.9 mmol) triethylamine. The mixture was stirred for 2 h at room temperature and extracted with water and dichloromethane, then the organic solvent was evaporated and the title compound was recrystallized from ethanol (yield 3.24 g, 80%). Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of ethyl acetate.
Figures
Crystal data
C12H12ClN3O5 | F(000) = 1296 |
Mr = 313.70 | Dx = 1.580 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.7107 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 3316 reflections |
a = 10.7864 (3) Å | θ = 3.2–29.1° |
b = 11.1264 (3) Å | µ = 0.32 mm−1 |
c = 21.9775 (5) Å | T = 150 K |
V = 2637.60 (11) Å3 | Block, yellow |
Z = 8 | 0.40 × 0.38 × 0.20 mm |
Data collection
Oxford Diffraction Xcalibur Eos diffractometer | 2696 independent reflections |
Radiation source: fine-focus sealed tube | 2240 reflections with I > 2σ(I) |
graphite | Rint = 0.021 |
Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 3.2° |
ω scans | h = −13→7 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | k = −13→13 |
Tmin = 0.979, Tmax = 1.0 | l = −27→15 |
6722 measured reflections |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.077 | All H-atom parameters refined |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0283P)2 + 0.9862P] where P = (Fo2 + 2Fc2)/3 |
2696 reflections | (Δ/σ)max < 0.001 |
238 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.14710 (4) | 0.51437 (4) | 0.126198 (18) | 0.02618 (12) | |
O1 | 0.28382 (11) | 0.39665 (10) | 0.03083 (6) | 0.0308 (3) | |
O2 | 0.37259 (10) | 0.52238 (11) | −0.03080 (6) | 0.0297 (3) | |
O3 | 0.06436 (13) | 0.74355 (12) | −0.14870 (6) | 0.0376 (3) | |
O4 | −0.09872 (13) | 0.81129 (12) | −0.10265 (6) | 0.0409 (4) | |
O5 | −0.18116 (11) | 0.60708 (11) | 0.10878 (6) | 0.0331 (3) | |
N1 | 0.28706 (12) | 0.49108 (12) | 0.00224 (6) | 0.0219 (3) | |
N2 | −0.00012 (14) | 0.75653 (13) | −0.10356 (7) | 0.0269 (3) | |
N3 | −0.05433 (13) | 0.73621 (12) | 0.15851 (6) | 0.0238 (3) | |
C1 | 0.10865 (14) | 0.58412 (14) | 0.05898 (7) | 0.0179 (3) | |
C2 | 0.17880 (14) | 0.57192 (13) | 0.00600 (7) | 0.0178 (3) | |
C3 | 0.14762 (15) | 0.63140 (14) | −0.04708 (7) | 0.0188 (3) | |
H3 | 0.1955 (17) | 0.6182 (15) | −0.0830 (8) | 0.028 (5)* | |
C4 | 0.04113 (15) | 0.69969 (13) | −0.04645 (7) | 0.0191 (3) | |
C5 | −0.03125 (16) | 0.71333 (14) | 0.00470 (7) | 0.0204 (4) | |
H5 | −0.1055 (16) | 0.7566 (15) | 0.0036 (7) | 0.018 (4)* | |
C6 | 0.00352 (14) | 0.65690 (13) | 0.05846 (7) | 0.0177 (3) | |
C7 | −0.08451 (15) | 0.66492 (14) | 0.11200 (7) | 0.0207 (3) | |
C8 | 0.05941 (16) | 0.80784 (16) | 0.16249 (9) | 0.0274 (4) | |
H8A | 0.1068 (18) | 0.7963 (17) | 0.1263 (9) | 0.034 (5)* | |
H8B | 0.1111 (17) | 0.7754 (16) | 0.1984 (9) | 0.032 (5)* | |
C9 | 0.02738 (18) | 0.93938 (16) | 0.17196 (8) | 0.0274 (4) | |
H9A | −0.0143 (18) | 0.9693 (16) | 0.1353 (9) | 0.031 (5)* | |
H9B | 0.1038 (18) | 0.9841 (16) | 0.1769 (8) | 0.029 (5)* | |
C10 | −0.05450 (17) | 0.95620 (17) | 0.22745 (8) | 0.0274 (4) | |
H10A | −0.0069 (16) | 0.9325 (15) | 0.2639 (8) | 0.025 (5)* | |
H10B | −0.0785 (17) | 1.0388 (17) | 0.2320 (8) | 0.033 (5)* | |
C11 | −0.16990 (17) | 0.87786 (17) | 0.22253 (9) | 0.0306 (4) | |
H11A | −0.2230 (19) | 0.9067 (18) | 0.1888 (9) | 0.040 (6)* | |
H11B | −0.2193 (18) | 0.8836 (16) | 0.2593 (10) | 0.041 (6)* | |
C12 | −0.13634 (17) | 0.74677 (16) | 0.21155 (8) | 0.0269 (4) | |
H12A | −0.2103 (16) | 0.7001 (15) | 0.2041 (8) | 0.022 (4)* | |
H12B | −0.0908 (17) | 0.7123 (15) | 0.2473 (9) | 0.028 (5)* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0277 (2) | 0.0334 (2) | 0.0174 (2) | 0.00122 (18) | −0.00259 (17) | 0.00550 (16) |
O1 | 0.0322 (7) | 0.0251 (6) | 0.0350 (7) | 0.0091 (6) | −0.0015 (6) | 0.0029 (6) |
O2 | 0.0189 (6) | 0.0370 (7) | 0.0332 (7) | −0.0013 (5) | 0.0053 (5) | −0.0070 (6) |
O3 | 0.0446 (8) | 0.0466 (8) | 0.0216 (7) | −0.0021 (7) | −0.0007 (6) | 0.0093 (6) |
O4 | 0.0399 (8) | 0.0395 (8) | 0.0434 (8) | 0.0123 (7) | −0.0068 (7) | 0.0168 (7) |
O5 | 0.0250 (6) | 0.0402 (7) | 0.0341 (7) | −0.0139 (6) | 0.0082 (6) | −0.0182 (6) |
N1 | 0.0188 (7) | 0.0246 (7) | 0.0222 (7) | 0.0011 (6) | −0.0029 (6) | −0.0045 (6) |
N2 | 0.0329 (8) | 0.0232 (7) | 0.0246 (8) | −0.0050 (7) | −0.0055 (7) | 0.0064 (6) |
N3 | 0.0220 (7) | 0.0285 (7) | 0.0209 (7) | −0.0096 (6) | 0.0061 (6) | −0.0079 (6) |
C1 | 0.0199 (7) | 0.0175 (8) | 0.0162 (7) | −0.0048 (7) | −0.0022 (7) | 0.0008 (6) |
C2 | 0.0172 (7) | 0.0166 (8) | 0.0198 (8) | −0.0012 (7) | −0.0015 (6) | −0.0035 (6) |
C3 | 0.0215 (8) | 0.0191 (8) | 0.0159 (8) | −0.0049 (7) | 0.0011 (7) | −0.0026 (6) |
C4 | 0.0244 (8) | 0.0141 (7) | 0.0187 (8) | −0.0030 (7) | −0.0036 (7) | 0.0014 (6) |
C5 | 0.0203 (8) | 0.0154 (8) | 0.0256 (9) | 0.0010 (7) | −0.0010 (7) | −0.0022 (7) |
C6 | 0.0193 (7) | 0.0151 (7) | 0.0186 (8) | −0.0038 (6) | 0.0001 (7) | −0.0048 (6) |
C7 | 0.0205 (8) | 0.0189 (8) | 0.0228 (9) | −0.0007 (7) | 0.0018 (7) | −0.0032 (7) |
C8 | 0.0225 (9) | 0.0332 (10) | 0.0266 (10) | −0.0106 (8) | 0.0062 (8) | −0.0110 (8) |
C9 | 0.0303 (10) | 0.0295 (10) | 0.0224 (9) | −0.0119 (8) | 0.0016 (8) | −0.0023 (7) |
C10 | 0.0308 (9) | 0.0256 (9) | 0.0258 (9) | −0.0027 (8) | 0.0018 (8) | −0.0077 (8) |
C11 | 0.0261 (9) | 0.0381 (11) | 0.0277 (10) | −0.0018 (8) | 0.0076 (8) | −0.0098 (8) |
C12 | 0.0272 (9) | 0.0322 (9) | 0.0212 (9) | −0.0100 (8) | 0.0084 (8) | −0.0058 (8) |
Geometric parameters (Å, °)
Cl1—C1 | 1.7196 (16) | C5—H5 | 0.935 (17) |
O1—N1 | 1.2247 (17) | C5—C6 | 1.389 (2) |
O2—N1 | 1.2246 (17) | C6—C7 | 1.515 (2) |
O3—N2 | 1.2200 (19) | C8—H8A | 0.95 (2) |
O4—N2 | 1.2260 (19) | C8—H8B | 1.032 (19) |
O5—C7 | 1.2273 (19) | C8—C9 | 1.518 (3) |
N1—C2 | 1.476 (2) | C9—H9A | 0.98 (2) |
N2—C4 | 1.474 (2) | C9—H9B | 0.97 (2) |
N3—C7 | 1.334 (2) | C9—C10 | 1.517 (2) |
N3—C8 | 1.466 (2) | C10—H10A | 0.987 (18) |
N3—C12 | 1.468 (2) | C10—H10B | 0.960 (19) |
C1—C2 | 1.395 (2) | C10—C11 | 1.523 (2) |
C1—C6 | 1.394 (2) | C11—H11A | 0.99 (2) |
C2—C3 | 1.383 (2) | C11—H11B | 0.97 (2) |
C3—H3 | 0.954 (18) | C11—C12 | 1.522 (3) |
C3—C4 | 1.377 (2) | C12—H12A | 0.966 (17) |
C4—C5 | 1.377 (2) | C12—H12B | 1.004 (19) |
O1—N1—C2 | 118.12 (13) | C6—C1—Cl1 | 117.75 (12) |
O2—N1—O1 | 124.73 (14) | C6—C1—C2 | 119.41 (14) |
O2—N1—C2 | 117.11 (13) | C6—C5—H5 | 119.0 (10) |
O3—N2—O4 | 124.53 (15) | C7—N3—C8 | 124.97 (14) |
O3—N2—C4 | 118.00 (14) | C7—N3—C12 | 120.59 (13) |
O4—N2—C4 | 117.45 (15) | C8—N3—C12 | 114.43 (13) |
O5—C7—N3 | 124.28 (15) | C8—C9—H9A | 108.6 (11) |
O5—C7—C6 | 117.18 (14) | C8—C9—H9B | 108.5 (10) |
N3—C7—C6 | 118.51 (13) | H8A—C8—H8B | 107.6 (15) |
N3—C8—H8A | 109.0 (11) | C9—C8—H8A | 111.5 (12) |
N3—C8—H8B | 107.9 (10) | C9—C8—H8B | 110.8 (10) |
N3—C8—C9 | 109.99 (15) | C9—C10—H10A | 108.5 (10) |
N3—C12—C11 | 110.24 (15) | C9—C10—H10B | 111.1 (11) |
N3—C12—H12A | 108.7 (10) | C9—C10—C11 | 110.37 (15) |
N3—C12—H12B | 107.2 (10) | H9A—C9—H9B | 107.9 (15) |
C1—C2—N1 | 122.34 (14) | C10—C9—C8 | 111.20 (15) |
C1—C6—C7 | 122.55 (14) | C10—C9—H9A | 110.6 (11) |
C2—C1—Cl1 | 122.84 (12) | C10—C9—H9B | 110.0 (11) |
C2—C3—H3 | 119.5 (11) | C10—C11—H11A | 109.9 (12) |
C3—C2—N1 | 115.90 (14) | C10—C11—H11B | 110.6 (11) |
C3—C2—C1 | 121.70 (14) | H10A—C10—H10B | 108.1 (15) |
C3—C4—N2 | 118.68 (14) | C11—C10—H10A | 109.2 (10) |
C4—C3—C2 | 117.30 (15) | C11—C10—H10B | 109.5 (11) |
C4—C3—H3 | 122.9 (11) | C11—C12—H12A | 110.2 (10) |
C4—C5—H5 | 121.5 (10) | C11—C12—H12B | 111.0 (10) |
C4—C5—C6 | 119.43 (15) | H11A—C11—H11B | 106.6 (16) |
C5—C4—N2 | 118.47 (14) | C12—C11—C10 | 111.42 (15) |
C5—C4—C3 | 122.80 (15) | C12—C11—H11A | 109.2 (12) |
C5—C6—C1 | 119.29 (14) | C12—C11—H11B | 109.0 (11) |
C5—C6—C7 | 117.69 (14) | H12A—C12—H12B | 109.3 (14) |
Cl1—C1—C2—N1 | 4.4 (2) | C2—C3—C4—N2 | −175.24 (14) |
Cl1—C1—C2—C3 | −178.34 (12) | C2—C3—C4—C5 | 2.1 (2) |
Cl1—C1—C6—C5 | −179.12 (12) | C3—C4—C5—C6 | 0.3 (2) |
Cl1—C1—C6—C7 | −7.17 (19) | C4—C5—C6—C1 | −2.2 (2) |
O1—N1—C2—C1 | 34.7 (2) | C4—C5—C6—C7 | −174.59 (14) |
O1—N1—C2—C3 | −142.65 (15) | C5—C6—C7—O5 | 71.21 (19) |
O2—N1—C2—C1 | −147.16 (15) | C5—C6—C7—N3 | −106.95 (18) |
O2—N1—C2—C3 | 35.45 (19) | C6—C1—C2—N1 | −176.46 (13) |
O3—N2—C4—C3 | −2.2 (2) | C6—C1—C2—C3 | 0.8 (2) |
O3—N2—C4—C5 | −179.72 (14) | C7—N3—C8—C9 | 123.65 (18) |
O4—N2—C4—C3 | 176.04 (14) | C7—N3—C12—C11 | −124.47 (17) |
O4—N2—C4—C5 | −1.4 (2) | C8—N3—C7—O5 | −178.63 (17) |
N1—C2—C3—C4 | 174.76 (13) | C8—N3—C7—C6 | −0.6 (2) |
N2—C4—C5—C6 | 177.67 (14) | C8—N3—C12—C11 | 56.3 (2) |
N3—C8—C9—C10 | 55.5 (2) | C8—C9—C10—C11 | −55.0 (2) |
C1—C2—C3—C4 | −2.6 (2) | C9—C10—C11—C12 | 54.1 (2) |
C1—C6—C7—O5 | −100.86 (19) | C10—C11—C12—N3 | −53.7 (2) |
C1—C6—C7—N3 | 81.0 (2) | C12—N3—C7—O5 | 2.2 (3) |
C2—C1—C6—C5 | 1.7 (2) | C12—N3—C7—C6 | −179.80 (15) |
C2—C1—C6—C7 | 173.67 (14) | C12—N3—C8—C9 | −57.1 (2) |
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5492).
References
- Christophe, T., Jackson, M., Jeon, H. K., Fenistein, D., Contreras-Dominguez, M., Kim, J., Genovesio, A., Carralot, J. P., Ewann, F., Kim, E. H., Lee, S. Y., Kang, S., Seo, M. J., Park, E. J., Skovierova, H., Pham, H., Riccardi, G., Nam, J. Y., Marsollier, L., Kempf, M., Joly-Guillou, M. L., Oh, T., Shin, W. K., No, Z., Nehrbass, U., Brosch, R., Cole, S. T. & Brodin, P. (2009). PLoS Pathog. 5, 1–10. [DOI] [PMC free article] [PubMed]
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Oxford Diffraction (2006). CrysAlis PRO Oxford Diffraction Ltd, Abingdon, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811011469/bt5492sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011469/bt5492Isup2.hkl