Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Mar 12;67(Pt 4):o855. doi: 10.1107/S1600536811006192

10-Phenyl-6b,7,8,9,9a,10-hexa­hydro-6H-cyclo­penta­[4,5]pyrano[3,2-c]chromen-6,9-dione

Zhen Qiao a, Li Liu a,*, Dong Wang a
PMCID: PMC3099813  PMID: 21754136

Abstract

In the title compound, C21H16O4, the dihedral angle between the phenyl ring and the 2H-chromene ring system is 59.8 (2)°. The crystal packing is stabilized by weak π–π stacking inter­actions [centroid–centroid distances = 3.667 (2) Å] and inter­molecular C—H⋯O hydrogen-bonding inter­actions.

Related literature

For applications of coumarin, see: Vu et al. (2008 ▶); Maresca et al. (2009 ▶); Maresca et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶).graphic file with name e-67-0o855-scheme1.jpg

Experimental

Crystal data

  • C21H16O4

  • M r = 332.34

  • Monoclinic, Inline graphic

  • a = 9.1672 (14) Å

  • b = 8.6538 (14) Å

  • c = 19.899 (3) Å

  • β = 91.295 (3)°

  • V = 1578.2 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 173 K

  • 0.50 × 0.50 × 0.41 mm

Data collection

  • Rigaku Saturn724+ CCD diffractometer

  • Absorption correction: numerical (CrystalClear; Rigaku, 2007 ▶) T min = 0.953, T max = 0.961

  • 13128 measured reflections

  • 3608 independent reflections

  • 3469 reflections with I > 2σ(I)

  • R int = 0.030

Refinement

  • R[F 2 > 2σ(F 2)] = 0.055

  • wR(F 2) = 0.144

  • S = 1.10

  • 3608 reflections

  • 226 parameters

  • H-atom parameters constrained

  • Δρmax = 0.38 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006192/hg2800sup1.cif

e-67-0o855-sup1.cif (21KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006192/hg2800Isup2.hkl

e-67-0o855-Isup2.hkl (176.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C8—H8A⋯O3i 1.00 2.45 3.4042 (19) 160
C17—H17A⋯O2ii 0.95 2.54 3.322 (2) 140

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Coumarins constitute a ubiquitous class of heterocycles found in numerous natural products, food industry, marketed drugs, and drug candidates [Vu et al., 2008; Maresca et al., 2009; Maresca et al., 2010]. Alkylations of electron-rich arenes such as 4-hydroxycoumarin are of great importance for the synthesis of many natural products and pharmaceuticals. Therefore, multiple approaches have been undertaken to develop catalytic enantioselective additions of 4-hydroxycoumarin to α,β-unsaturated carbonyl compounds. In this context the use of cyclic Morita Baylis Hillman alcohol is of particular interest since they not only exhibit regioselectivity but also can be cyclized readily followed by reaction of the resultant allylic cation with a suitable O nucleophile. In continuation of our work in this direction, we report here the crystal structure of the title compound.

In title compound, all bond lengths in the molecular are normal (Allen et al., 1987). The dihedral angle between benzene (C16—C21) and 2H-chromene (C1—C7/C14/C15/O1) rings is 59.8 (2) °. π—π interactions are indicated by the short distance (Cg1···Cg2 distance of 3.667 (2) Å, symmetry code: 1 - x,1 - y,z) between the centroids of the 2H-pyran ring (C1/C6/C7/C14/C15/O2) (Cg1) and benzene ring C1—C6 (Cg2) (Table 1). There are weaker C—H···O intermolecular interactions, which stabilized the structure (Table 1).

Experimental

A mixture of 9-amino-9-deoxyepiquinine QA (20 mol %) in the combination with TFA (40 mol %) exhibited high catalytic activity for the Michael addition followed by cycloaddition of 4-hydroxycoumarin to cyclopent-2-enone-derived MBH alcohol in acetone at 60 °C for 72 h, yield 61%. Single crystals suitable for X-ray measurements were obtained by recrystallization from acetonitrile at room temperature.

Refinement

H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 to 1.00 Å and with Uiso(H) = 1.2 times Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with atom labels and 40% probability displacement ellipsoids for non-H atoms.

Crystal data

C21H16O4 F(000) = 696
Mr = 332.34 Dx = 1.399 Mg m−3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 4768 reflections
a = 9.1672 (14) Å θ = 1.0–27.5°
b = 8.6538 (14) Å µ = 0.10 mm−1
c = 19.899 (3) Å T = 173 K
β = 91.295 (3)° Block, colorless
V = 1578.2 (4) Å3 0.50 × 0.50 × 0.41 mm
Z = 4

Data collection

Rigaku Saturn724+ CCD diffractometer 3608 independent reflections
Radiation source: sealed tube 3469 reflections with I > 2σ(I)
graphite Rint = 0.030
ω scans at fixed χ = 45° θmax = 27.5°, θmin = 3.1°
Absorption correction: numerical (CrystalClear; Rigaku, 2007) h = −11→11
Tmin = 0.953, Tmax = 0.961 k = −10→11
13128 measured reflections l = −22→25

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144 H-atom parameters constrained
S = 1.10 w = 1/[σ2(Fo2) + (0.0704P)2 + 0.6329P] where P = (Fo2 + 2Fc2)/3
3608 reflections (Δ/σ)max < 0.001
226 parameters Δρmax = 0.38 e Å−3
0 restraints Δρmin = −0.22 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.50827 (10) 0.14483 (13) 0.10143 (5) 0.0292 (2)
O2 0.30494 (11) 0.31578 (13) −0.06936 (5) 0.0342 (3)
O3 0.21059 (14) −0.10952 (16) 0.24113 (6) 0.0472 (3)
O4 0.09368 (13) 0.21341 (18) −0.04206 (7) 0.0509 (4)
C1 0.45295 (15) 0.33318 (17) −0.05937 (7) 0.0293 (3)
C2 0.52778 (18) 0.41320 (18) −0.10830 (8) 0.0344 (3)
H2A 0.4773 0.4543 −0.1465 0.041*
C3 0.67665 (18) 0.43206 (18) −0.10057 (8) 0.0358 (3)
H3A 0.7289 0.4869 −0.1337 0.043*
C4 0.75115 (17) 0.37144 (19) −0.04468 (8) 0.0358 (3)
H4A 0.8538 0.3846 −0.0400 0.043*
C5 0.67574 (16) 0.29218 (18) 0.00397 (8) 0.0321 (3)
H5A 0.7267 0.2512 0.0420 0.039*
C6 0.52458 (15) 0.27221 (16) −0.00277 (7) 0.0268 (3)
C7 0.43568 (15) 0.19240 (16) 0.04545 (7) 0.0260 (3)
C8 0.41941 (15) 0.10574 (17) 0.15850 (7) 0.0275 (3)
H8A 0.3765 0.2025 0.1771 0.033*
C9 0.29535 (15) −0.00278 (17) 0.13564 (7) 0.0289 (3)
H9A 0.3352 −0.1037 0.1198 0.035*
C10 0.18782 (18) −0.02793 (19) 0.19294 (8) 0.0356 (3)
C11 0.0505 (2) 0.0604 (3) 0.17786 (11) 0.0564 (5)
H11A 0.0224 0.1227 0.2173 0.068*
H11B −0.0305 −0.0110 0.1661 0.068*
C12 0.08425 (18) 0.1647 (2) 0.11868 (9) 0.0412 (4)
H12A 0.1231 0.2656 0.1342 0.049*
H12B −0.0039 0.1824 0.0900 0.049*
C13 0.20060 (15) 0.07317 (18) 0.08039 (7) 0.0308 (3)
H13A 0.1506 −0.0100 0.0537 0.037*
C14 0.29132 (15) 0.16801 (17) 0.03381 (7) 0.0285 (3)
C15 0.22106 (16) 0.22987 (19) −0.02619 (8) 0.0343 (3)
C16 0.51992 (15) 0.03462 (17) 0.21074 (7) 0.0274 (3)
C17 0.62801 (17) −0.06787 (19) 0.19234 (8) 0.0360 (3)
H17A 0.6423 −0.0896 0.1462 0.043*
C18 0.71543 (18) −0.1389 (2) 0.24094 (9) 0.0440 (4)
H18A 0.7886 −0.2101 0.2280 0.053*
C19 0.69637 (19) −0.1066 (2) 0.30784 (9) 0.0453 (4)
H19A 0.7564 −0.1553 0.3411 0.054*
C20 0.59009 (19) −0.0033 (2) 0.32673 (8) 0.0413 (4)
H20A 0.5775 0.0194 0.3729 0.050*
C21 0.50157 (17) 0.06724 (18) 0.27822 (7) 0.0325 (3)
H21A 0.4283 0.1380 0.2913 0.039*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0241 (5) 0.0389 (6) 0.0247 (5) −0.0026 (4) 0.0003 (4) 0.0033 (4)
O2 0.0283 (5) 0.0438 (6) 0.0306 (5) 0.0048 (4) 0.0013 (4) 0.0074 (4)
O3 0.0493 (7) 0.0534 (8) 0.0387 (6) −0.0192 (6) 0.0001 (5) 0.0139 (5)
O4 0.0280 (6) 0.0765 (10) 0.0478 (7) −0.0013 (6) −0.0061 (5) 0.0182 (6)
C1 0.0289 (7) 0.0296 (7) 0.0295 (7) 0.0032 (5) 0.0043 (5) −0.0011 (5)
C2 0.0418 (8) 0.0309 (7) 0.0307 (7) 0.0054 (6) 0.0077 (6) 0.0029 (6)
C3 0.0416 (8) 0.0309 (7) 0.0356 (8) −0.0024 (6) 0.0145 (6) 0.0004 (6)
C4 0.0303 (7) 0.0372 (8) 0.0402 (8) −0.0051 (6) 0.0093 (6) −0.0060 (6)
C5 0.0281 (7) 0.0369 (8) 0.0315 (7) −0.0019 (6) 0.0028 (5) −0.0040 (6)
C6 0.0261 (7) 0.0279 (7) 0.0264 (6) 0.0002 (5) 0.0044 (5) −0.0029 (5)
C7 0.0256 (6) 0.0274 (7) 0.0251 (6) 0.0016 (5) 0.0007 (5) −0.0012 (5)
C8 0.0263 (6) 0.0307 (7) 0.0256 (6) −0.0004 (5) 0.0042 (5) −0.0006 (5)
C9 0.0291 (7) 0.0273 (7) 0.0303 (7) −0.0015 (5) 0.0017 (5) −0.0004 (5)
C10 0.0367 (8) 0.0374 (8) 0.0327 (7) −0.0132 (6) 0.0032 (6) 0.0016 (6)
C11 0.0377 (9) 0.0749 (14) 0.0572 (11) 0.0069 (9) 0.0193 (8) 0.0207 (10)
C12 0.0290 (7) 0.0491 (10) 0.0460 (9) 0.0061 (7) 0.0093 (6) 0.0064 (7)
C13 0.0251 (7) 0.0342 (7) 0.0332 (7) −0.0023 (5) 0.0004 (5) 0.0018 (6)
C14 0.0261 (7) 0.0326 (7) 0.0269 (6) 0.0019 (5) 0.0023 (5) 0.0009 (5)
C15 0.0266 (7) 0.0431 (9) 0.0333 (7) 0.0032 (6) 0.0009 (6) 0.0046 (6)
C16 0.0270 (6) 0.0284 (7) 0.0267 (7) −0.0024 (5) 0.0001 (5) −0.0003 (5)
C17 0.0346 (8) 0.0390 (8) 0.0345 (8) 0.0058 (6) 0.0007 (6) −0.0031 (6)
C18 0.0330 (8) 0.0438 (9) 0.0550 (10) 0.0062 (7) −0.0019 (7) 0.0089 (8)
C19 0.0363 (8) 0.0534 (10) 0.0456 (9) −0.0102 (7) −0.0133 (7) 0.0196 (8)
C20 0.0456 (9) 0.0494 (10) 0.0288 (7) −0.0187 (8) −0.0053 (6) 0.0039 (7)
C21 0.0363 (8) 0.0328 (7) 0.0287 (7) −0.0073 (6) 0.0031 (6) −0.0022 (6)

Geometric parameters (Å, °)

O1—C7 1.3491 (17) C9—H9A 1.0000
O1—C8 1.4524 (16) C10—C11 1.498 (3)
O2—C1 1.3751 (17) C11—C12 1.521 (3)
O2—C15 1.3828 (18) C11—H11A 0.9900
O3—C10 1.205 (2) C11—H11B 0.9900
O4—C15 1.2112 (19) C12—C13 1.543 (2)
C1—C2 1.389 (2) C12—H12A 0.9900
C1—C6 1.394 (2) C12—H12B 0.9900
C2—C3 1.380 (2) C13—C14 1.503 (2)
C2—H2A 0.9500 C13—H13A 1.0000
C3—C4 1.394 (2) C14—C15 1.446 (2)
C3—H3A 0.9500 C16—C17 1.385 (2)
C4—C5 1.384 (2) C16—C21 1.386 (2)
C4—H4A 0.9500 C17—C18 1.386 (2)
C5—C6 1.3999 (19) C17—H17A 0.9500
C5—H5A 0.9500 C18—C19 1.375 (3)
C6—C7 1.4483 (19) C18—H18A 0.9500
C7—C14 1.3548 (19) C19—C20 1.380 (3)
C8—C16 1.5050 (19) C19—H19A 0.9500
C8—C9 1.5359 (19) C20—C21 1.388 (2)
C8—H8A 1.0000 C20—H20A 0.9500
C9—C13 1.534 (2) C21—H21A 0.9500
C9—C10 1.540 (2)
C7—O1—C8 116.22 (10) C12—C11—H11A 110.6
C1—O2—C15 121.99 (11) C10—C11—H11B 110.6
O2—C1—C2 117.04 (13) C12—C11—H11B 110.6
O2—C1—C6 121.37 (12) H11A—C11—H11B 108.7
C2—C1—C6 121.59 (14) C11—C12—C13 103.48 (14)
C3—C2—C1 118.94 (14) C11—C12—H12A 111.1
C3—C2—H2A 120.5 C13—C12—H12A 111.1
C1—C2—H2A 120.5 C11—C12—H12B 111.1
C2—C3—C4 120.66 (14) C13—C12—H12B 111.1
C2—C3—H3A 119.7 H12A—C12—H12B 109.0
C4—C3—H3A 119.7 C14—C13—C9 111.33 (12)
C5—C4—C3 120.06 (14) C14—C13—C12 114.99 (13)
C5—C4—H4A 120.0 C9—C13—C12 104.62 (12)
C3—C4—H4A 120.0 C14—C13—H13A 108.6
C4—C5—C6 120.20 (14) C9—C13—H13A 108.6
C4—C5—H5A 119.9 C12—C13—H13A 108.6
C6—C5—H5A 119.9 C7—C14—C15 119.90 (13)
C1—C6—C5 118.54 (13) C7—C14—C13 122.11 (13)
C1—C6—C7 116.98 (12) C15—C14—C13 117.96 (13)
C5—C6—C7 124.48 (13) O4—C15—O2 116.59 (14)
O1—C7—C14 123.74 (13) O4—C15—C14 125.49 (15)
O1—C7—C6 114.72 (12) O2—C15—C14 117.93 (13)
C14—C7—C6 121.54 (13) C17—C16—C21 119.32 (14)
O1—C8—C16 106.85 (11) C17—C16—C8 120.64 (13)
O1—C8—C9 109.60 (11) C21—C16—C8 120.00 (13)
C16—C8—C9 113.09 (12) C16—C17—C18 120.36 (15)
O1—C8—H8A 109.1 C16—C17—H17A 119.8
C16—C8—H8A 109.1 C18—C17—H17A 119.8
C9—C8—H8A 109.1 C19—C18—C17 120.06 (17)
C13—C9—C8 110.72 (12) C19—C18—H18A 120.0
C13—C9—C10 103.28 (12) C17—C18—H18A 120.0
C8—C9—C10 110.45 (12) C18—C19—C20 120.08 (15)
C13—C9—H9A 110.7 C18—C19—H19A 120.0
C8—C9—H9A 110.7 C20—C19—H19A 120.0
C10—C9—H9A 110.7 C19—C20—C21 120.03 (15)
O3—C10—C11 126.03 (15) C19—C20—H20A 120.0
O3—C10—C9 124.73 (16) C21—C20—H20A 120.0
C11—C10—C9 109.21 (13) C16—C21—C20 120.14 (15)
C10—C11—C12 105.83 (13) C16—C21—H21A 119.9
C10—C11—H11A 110.6 C20—C21—H21A 119.9
C15—O2—C1—C2 175.79 (14) C8—C9—C13—C14 36.94 (16)
C15—O2—C1—C6 −3.8 (2) C10—C9—C13—C14 155.18 (12)
O2—C1—C2—C3 −179.40 (13) C8—C9—C13—C12 −87.86 (14)
C6—C1—C2—C3 0.2 (2) C10—C9—C13—C12 30.38 (15)
C1—C2—C3—C4 0.2 (2) C11—C12—C13—C14 −159.98 (15)
C2—C3—C4—C5 −0.4 (2) C11—C12—C13—C9 −37.54 (17)
C3—C4—C5—C6 0.1 (2) O1—C7—C14—C15 176.95 (13)
O2—C1—C6—C5 179.16 (13) C6—C7—C14—C15 −3.5 (2)
C2—C1—C6—C5 −0.4 (2) O1—C7—C14—C13 −5.1 (2)
O2—C1—C6—C7 −1.1 (2) C6—C7—C14—C13 174.40 (13)
C2—C1—C6—C7 179.32 (13) C9—C13—C14—C7 −6.2 (2)
C4—C5—C6—C1 0.3 (2) C12—C13—C14—C7 112.55 (16)
C4—C5—C6—C7 −179.48 (14) C9—C13—C14—C15 171.73 (13)
C8—O1—C7—C14 −17.6 (2) C12—C13—C14—C15 −69.51 (18)
C8—O1—C7—C6 162.78 (12) C1—O2—C15—O4 −175.20 (15)
C1—C6—C7—O1 −175.67 (12) C1—O2—C15—C14 5.1 (2)
C5—C6—C7—O1 4.1 (2) C7—C14—C15—O4 178.92 (16)
C1—C6—C7—C14 4.7 (2) C13—C14—C15—O4 0.9 (3)
C5—C6—C7—C14 −175.52 (14) C7—C14—C15—O2 −1.4 (2)
C7—O1—C8—C16 171.88 (11) C13—C14—C15—O2 −179.35 (13)
C7—O1—C8—C9 49.00 (16) O1—C8—C16—C17 −40.89 (18)
O1—C8—C9—C13 −58.49 (15) C9—C8—C16—C17 79.79 (17)
C16—C8—C9—C13 −177.59 (11) O1—C8—C16—C21 141.38 (13)
O1—C8—C9—C10 −172.27 (12) C9—C8—C16—C21 −97.94 (15)
C16—C8—C9—C10 68.63 (15) C21—C16—C17—C18 1.0 (2)
C13—C9—C10—O3 165.87 (15) C8—C16—C17—C18 −176.74 (15)
C8—C9—C10—O3 −75.70 (19) C16—C17—C18—C19 −0.8 (3)
C13—C9—C10—C11 −12.28 (18) C17—C18—C19—C20 0.1 (3)
C8—C9—C10—C11 106.14 (16) C18—C19—C20—C21 0.4 (3)
O3—C10—C11—C12 170.98 (17) C17—C16—C21—C20 −0.5 (2)
C9—C10—C11—C12 −10.9 (2) C8—C16—C21—C20 177.23 (13)
C10—C11—C12—C13 29.6 (2) C19—C20—C21—C16 −0.2 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C8—H8A···O3i 1.00 2.45 3.4042 (19) 160
C17—H17A···O2ii 0.95 2.54 3.322 (2) 140

Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2800).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Maresca, A., Temperini, C., Pochet, L., Masereel, B., Scozzafava, A. & Supuran, C. T. (2010). J. Med. Chem. 53, 335–344. [DOI] [PubMed]
  3. Maresca, A., Temperini, C., Vu, H., Pham, N. B., Poulsen, S. A., Scozzafava, A., Quinn, R. J. & Supuran, C. T. (2009). J. Am. Chem. Soc. 131, 3057–3062. [DOI] [PubMed]
  4. Rigaku (2007). CrystalClear Rigaku Corporation, Tokyo, Japan.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Vu, H., Pham, N. B. & Quinn, R. J. (2008). J. Biomol. Screen. 13, 265–275. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006192/hg2800sup1.cif

e-67-0o855-sup1.cif (21KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006192/hg2800Isup2.hkl

e-67-0o855-Isup2.hkl (176.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES