Abstract
In the title compound, [Zn(C48H24N8)], the coordination environment of the Zn2+ ion (site symmetry
) is octahedral, with four indole N atoms forming the equatorial plane and the axial positions being occupied by N atoms from the cyanide groups of neighbouring molecules. In the crystal, adjacent molecules are assembled into a two-dimensional supramolecular framework parallel to (
01) via the coodination bonding. Topology analysis reveals this compound to be a (4,4)-connected network.
Related literature
For background to the use of porphyrins and derivatives, see: Jiang & Ng (2009 ▶). For the use of their metal complexes as catalysts, see: Chen et al. (2004 ▶). For Zn—N bond lengths in other Zn(II) porphyrin species, see: Muniappan et al. (2006 ▶). For the synthesis of the ligand, see: Kumar et al. (1998 ▶).
Experimental
Crystal data
[Zn(C48H24N8)]
M r = 778.12
Monoclinic,
a = 9.7373 (10) Å
b = 9.4468 (10) Å
c = 21.280 (2) Å
β = 101.229 (2)°
V = 1920.0 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.69 mm−1
T = 295 K
0.30 × 0.05 × 0.05 mm
Data collection
Bruker SMART APEX CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1995 ▶) T min = 0.726, T max = 0.967
9272 measured reflections
3376 independent reflections
2610 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.109
S = 1.05
3376 reflections
259 parameters
H-atom parameters constrained
Δρmax = 0.34 e Å−3
Δρmin = −0.24 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 1998 ▶); software used to prepare material for publication: XP.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100849X/jh2269sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100849X/jh2269Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
This work was supported by the Natural Science Foundation of China.
supplementary crystallographic information
Comment
Porphyrins and derivatives have been an important class of dyes and pigments with extensive applications in the paints, printing, and textile industries ever since last century (Jiang & Ng, 2009). Their metal complexes are well known catalysts for numerous chemical reactions (Chen et al., 2004). Therefore, it is worthy to prepare corresponding metal complex.
As shown in Fig.1, compound I is a mononuclear neutral complex with a two-dimensional supramolecular configuration. Each Zn(II) atom is octa-coordinated completed by four indole nitrogen atoms and two nitrogen atoms of cyanogen groups. The bond length is in line with the distances of Zn—N in other Zn(II) porphyrin species (Muniappan et al., 2006). The neighboring Zn(TCPP) molecules are connected via the coodination bonding, forming a two-dimensional supramolecular network. The Zn(II) ion is treated as a node, this compound is a (4,4)-connected network, Figure 2.
Experimental
The H2TCPP ligand was synthesized according to the previous literature(Kumar et al., 1998). The synthesis method of the compound I was obtained by allowing the mixure of Zn(OAc)2 (0.02 g, 0.1 mmol) and H2TCPP (0.072 g, 0.1 mmol), and 15 mL DMF was sealed in 25 ml Teflon-lined stainless steel reactor, which was heated to 110°C. Purple block-shaped crystals suitable for X-ray diffraction analysis were separated by filtration with the yield of 35%.
Refinement
All H-atoms bound to carbon were refined using a riding model with distance C—H = 0.93 Å, Uiso = 1.2Ueq (C) for aromatic atoms and C—H = 0.96 Å.
Figures
Fig. 1.
A view of (I) with the unique atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level, hydrogen atoms are omited for clarity.
Fig. 2.
A view of two-dimensional supramolecular configuration of (I).
Crystal data
| [Zn(C48H24N8)] | F(000) = 796 |
| Mr = 778.12 | Dx = 1.346 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2737 reflections |
| a = 9.7373 (10) Å | θ = 2.4–25.3° |
| b = 9.4468 (10) Å | µ = 0.69 mm−1 |
| c = 21.280 (2) Å | T = 295 K |
| β = 101.229 (2)° | Needle, purple |
| V = 1920.0 (3) Å3 | 0.30 × 0.05 × 0.05 mm |
| Z = 2 |
Data collection
| Bruker SMART APEX CCD area-detector diffractometer | 3376 independent reflections |
| Radiation source: fine-focus sealed tube | 2610 reflections with I > 2σ(I) |
| graphite | Rint = 0.028 |
| Detector resolution: 0 pixels mm-1 | θmax = 25.0°, θmin = 2.0° |
| ω scans | h = −10→11 |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1995) | k = −11→11 |
| Tmin = 0.726, Tmax = 0.967 | l = −22→25 |
| 9272 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.109 | H-atom parameters constrained |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0599P)2 + 0.3654P] where P = (Fo2 + 2Fc2)/3 |
| 3376 reflections | (Δ/σ)max = 0.001 |
| 259 parameters | Δρmax = 0.34 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 1.0000 | 0.0000 | 1.0000 | 0.03997 (16) | |
| N2 | 0.9529 (2) | 0.0662 (2) | 1.08533 (8) | 0.0377 (5) | |
| C5 | 1.0664 (3) | −0.1265 (3) | 1.15417 (10) | 0.0382 (6) | |
| C10 | 0.8349 (2) | 0.2917 (3) | 1.04962 (11) | 0.0379 (6) | |
| N1 | 1.0918 (2) | −0.1781 (2) | 1.04326 (8) | 0.0370 (5) | |
| C4 | 1.1139 (3) | −0.2084 (3) | 1.10731 (11) | 0.0388 (6) | |
| C16 | 1.0114 (3) | −0.2648 (3) | 1.24674 (12) | 0.0565 (7) | |
| H16 | 0.9250 | −0.2874 | 1.2216 | 0.068* | |
| C13 | 1.2649 (3) | −0.1964 (3) | 1.32212 (13) | 0.0590 (8) | |
| H13 | 1.3505 | −0.1722 | 1.3475 | 0.071* | |
| C9 | 0.8856 (3) | 0.1885 (3) | 1.09594 (11) | 0.0399 (6) | |
| C14 | 1.1741 (3) | −0.2811 (3) | 1.34609 (11) | 0.0487 (7) | |
| C18 | 0.6411 (3) | 0.3997 (3) | 1.09533 (13) | 0.0508 (7) | |
| H18 | 0.6022 | 0.3099 | 1.0958 | 0.061* | |
| C11 | 1.1027 (3) | −0.1798 (3) | 1.22180 (10) | 0.0390 (6) | |
| N3 | 1.2522 (4) | −0.3731 (3) | 1.46169 (12) | 0.0859 (9) | |
| C20 | 0.6318 (3) | 0.6457 (3) | 1.11635 (13) | 0.0542 (7) | |
| C8 | 0.8808 (3) | 0.1975 (3) | 1.16333 (12) | 0.0516 (7) | |
| H8 | 0.8407 | 0.2701 | 1.1832 | 0.062* | |
| C12 | 1.2296 (3) | −0.1464 (3) | 1.26005 (12) | 0.0535 (7) | |
| H12 | 1.2924 | −0.0895 | 1.2439 | 0.064* | |
| C23 | 0.7632 (3) | 0.4171 (3) | 1.07089 (11) | 0.0397 (6) | |
| C21 | 0.7496 (3) | 0.6674 (3) | 1.09048 (12) | 0.0539 (7) | |
| H21 | 0.7846 | 0.7584 | 1.0880 | 0.065* | |
| C6 | 0.9912 (3) | −0.0002 (2) | 1.14336 (11) | 0.0386 (6) | |
| C17 | 1.2141 (4) | −0.3342 (3) | 1.41096 (13) | 0.0638 (8) | |
| C22 | 0.8154 (3) | 0.5528 (3) | 1.06823 (12) | 0.0474 (6) | |
| H22 | 0.8955 | 0.5673 | 1.0514 | 0.057* | |
| C24 | 0.5695 (4) | 0.7637 (4) | 1.14423 (19) | 0.0853 (11) | |
| C19 | 0.5774 (3) | 0.5122 (3) | 1.11873 (15) | 0.0558 (7) | |
| H19 | 0.4980 | 0.4981 | 1.1361 | 0.067* | |
| C7 | 0.9447 (3) | 0.0823 (3) | 1.19189 (11) | 0.0503 (7) | |
| H7 | 0.9568 | 0.0599 | 1.2352 | 0.060* | |
| C15 | 1.0462 (3) | −0.3172 (3) | 1.30882 (13) | 0.0585 (8) | |
| H15 | 0.9844 | −0.3756 | 1.3250 | 0.070* | |
| C1 | 1.1545 (3) | −0.2842 (3) | 1.01528 (11) | 0.0390 (6) | |
| C2 | 1.2155 (3) | −0.3853 (3) | 1.06340 (12) | 0.0498 (7) | |
| H2 | 1.2628 | −0.4678 | 1.0567 | 0.060* | |
| C3 | 1.1911 (3) | −0.3379 (3) | 1.11993 (12) | 0.0500 (7) | |
| H3 | 1.2191 | −0.3810 | 1.1597 | 0.060* | |
| N4 | 0.5198 (5) | 0.8532 (4) | 1.1673 (2) | 0.1405 (17) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0588 (3) | 0.0366 (3) | 0.0254 (2) | 0.01046 (19) | 0.01037 (17) | 0.00220 (16) |
| N2 | 0.0477 (12) | 0.0378 (11) | 0.0285 (10) | 0.0083 (10) | 0.0098 (9) | 0.0020 (9) |
| C5 | 0.0476 (14) | 0.0389 (14) | 0.0275 (12) | 0.0001 (11) | 0.0061 (10) | 0.0028 (10) |
| C10 | 0.0418 (13) | 0.0395 (14) | 0.0324 (12) | 0.0046 (11) | 0.0075 (10) | −0.0015 (10) |
| N1 | 0.0479 (12) | 0.0367 (11) | 0.0263 (9) | 0.0073 (9) | 0.0070 (8) | −0.0001 (8) |
| C4 | 0.0497 (14) | 0.0358 (13) | 0.0297 (12) | 0.0037 (11) | 0.0048 (10) | 0.0021 (10) |
| C16 | 0.0678 (19) | 0.0610 (18) | 0.0364 (14) | −0.0128 (15) | −0.0002 (13) | 0.0056 (13) |
| C13 | 0.0562 (17) | 0.076 (2) | 0.0393 (15) | 0.0041 (16) | −0.0047 (13) | 0.0030 (14) |
| C9 | 0.0471 (14) | 0.0415 (14) | 0.0319 (12) | 0.0050 (11) | 0.0097 (10) | −0.0008 (10) |
| C14 | 0.0720 (19) | 0.0447 (15) | 0.0280 (12) | 0.0195 (14) | 0.0063 (13) | 0.0003 (11) |
| C18 | 0.0547 (16) | 0.0402 (15) | 0.0610 (17) | 0.0013 (13) | 0.0195 (13) | −0.0009 (13) |
| C11 | 0.0523 (15) | 0.0365 (13) | 0.0277 (12) | 0.0063 (11) | 0.0068 (11) | 0.0001 (10) |
| N3 | 0.129 (3) | 0.088 (2) | 0.0374 (14) | 0.0310 (19) | 0.0062 (15) | 0.0121 (14) |
| C20 | 0.0636 (18) | 0.0475 (17) | 0.0531 (17) | 0.0133 (14) | 0.0152 (14) | −0.0054 (13) |
| C8 | 0.0727 (18) | 0.0519 (17) | 0.0327 (13) | 0.0172 (14) | 0.0168 (13) | −0.0011 (12) |
| C12 | 0.0564 (17) | 0.0639 (19) | 0.0394 (14) | −0.0039 (14) | 0.0075 (13) | 0.0074 (13) |
| C23 | 0.0472 (14) | 0.0391 (15) | 0.0315 (12) | 0.0068 (11) | 0.0049 (10) | −0.0009 (11) |
| C21 | 0.075 (2) | 0.0362 (15) | 0.0485 (16) | −0.0011 (14) | 0.0061 (14) | −0.0061 (12) |
| C6 | 0.0490 (14) | 0.0399 (14) | 0.0270 (11) | 0.0027 (11) | 0.0076 (10) | 0.0011 (10) |
| C17 | 0.092 (2) | 0.0591 (19) | 0.0392 (16) | 0.0252 (17) | 0.0088 (15) | 0.0042 (14) |
| C22 | 0.0531 (16) | 0.0479 (15) | 0.0417 (14) | 0.0013 (13) | 0.0102 (12) | −0.0025 (12) |
| C24 | 0.105 (3) | 0.050 (2) | 0.111 (3) | 0.0098 (19) | 0.047 (2) | −0.013 (2) |
| C19 | 0.0550 (17) | 0.0512 (18) | 0.0669 (19) | 0.0081 (14) | 0.0254 (14) | −0.0049 (14) |
| C7 | 0.0736 (19) | 0.0507 (17) | 0.0288 (13) | 0.0152 (14) | 0.0149 (12) | 0.0045 (12) |
| C15 | 0.085 (2) | 0.0498 (17) | 0.0425 (15) | −0.0079 (16) | 0.0159 (15) | 0.0093 (13) |
| C1 | 0.0441 (14) | 0.0393 (14) | 0.0330 (12) | 0.0067 (11) | 0.0061 (11) | 0.0006 (10) |
| C2 | 0.0650 (18) | 0.0457 (15) | 0.0378 (14) | 0.0208 (13) | 0.0077 (12) | 0.0026 (12) |
| C3 | 0.0685 (18) | 0.0485 (16) | 0.0310 (13) | 0.0172 (14) | 0.0049 (12) | 0.0081 (11) |
| N4 | 0.181 (4) | 0.070 (2) | 0.197 (4) | 0.024 (3) | 0.101 (3) | −0.036 (3) |
Geometric parameters (Å, °)
| Zn1—N1i | 2.0391 (19) | C18—C19 | 1.372 (4) |
| Zn1—N1 | 2.0391 (19) | C18—C23 | 1.396 (4) |
| Zn1—N2 | 2.0546 (18) | C18—H18 | 0.9300 |
| Zn1—N2i | 2.0546 (18) | C11—C12 | 1.377 (4) |
| Zn1—N3ii | 2.675 (2) | N3—C17 | 1.132 (3) |
| Zn1—N3iii | 2.675 (2) | C20—C19 | 1.372 (4) |
| N2—C9 | 1.369 (3) | C20—C21 | 1.381 (4) |
| N2—C6 | 1.370 (3) | C20—C24 | 1.450 (4) |
| C5—C6 | 1.396 (3) | C8—C7 | 1.339 (4) |
| C5—C4 | 1.409 (3) | C8—H8 | 0.9300 |
| C5—C11 | 1.501 (3) | C12—H12 | 0.9300 |
| C10—C9 | 1.406 (3) | C23—C22 | 1.384 (4) |
| C10—C1i | 1.406 (3) | C21—C22 | 1.387 (4) |
| C10—C23 | 1.490 (3) | C21—H21 | 0.9300 |
| N1—C4 | 1.368 (3) | C6—C7 | 1.435 (3) |
| N1—C1 | 1.368 (3) | C22—H22 | 0.9300 |
| C4—C3 | 1.434 (3) | C24—N4 | 1.134 (4) |
| C16—C11 | 1.379 (4) | C19—H19 | 0.9300 |
| C16—C15 | 1.390 (4) | C7—H7 | 0.9300 |
| C16—H16 | 0.9300 | C15—H15 | 0.9300 |
| C13—C14 | 1.363 (4) | C1—C10i | 1.406 (3) |
| C13—C12 | 1.382 (4) | C1—C2 | 1.441 (3) |
| C13—H13 | 0.9300 | C2—C3 | 1.348 (3) |
| C9—C8 | 1.446 (3) | C2—H2 | 0.9300 |
| C14—C15 | 1.383 (4) | C3—H3 | 0.9300 |
| C14—C17 | 1.449 (4) | ||
| N1i—Zn1—N1 | 180.000 (1) | C19—C20—C24 | 119.7 (3) |
| N1i—Zn1—N2 | 89.67 (7) | C21—C20—C24 | 119.7 (3) |
| N1—Zn1—N2 | 90.33 (7) | C7—C8—C9 | 107.5 (2) |
| N1i—Zn1—N2i | 90.33 (7) | C7—C8—H8 | 126.3 |
| N1—Zn1—N2i | 89.67 (7) | C9—C8—H8 | 126.3 |
| N2—Zn1—N2i | 180.000 (1) | C11—C12—C13 | 121.0 (3) |
| C9—N2—C6 | 106.99 (18) | C11—C12—H12 | 119.5 |
| C9—N2—Zn1 | 126.80 (15) | C13—C12—H12 | 119.5 |
| C6—N2—Zn1 | 126.09 (16) | C22—C23—C18 | 118.1 (2) |
| C6—C5—C4 | 125.9 (2) | C22—C23—C10 | 121.7 (2) |
| C6—C5—C11 | 117.6 (2) | C18—C23—C10 | 120.2 (2) |
| C4—C5—C11 | 116.5 (2) | C20—C21—C22 | 119.6 (3) |
| C9—C10—C1i | 124.8 (2) | C20—C21—H21 | 120.2 |
| C9—C10—C23 | 117.4 (2) | C22—C21—H21 | 120.2 |
| C1i—C10—C23 | 117.8 (2) | N2—C6—C5 | 125.5 (2) |
| C4—N1—C1 | 106.49 (18) | N2—C6—C7 | 109.4 (2) |
| C4—N1—Zn1 | 126.31 (16) | C5—C6—C7 | 125.1 (2) |
| C1—N1—Zn1 | 126.96 (15) | N3—C17—C14 | 176.4 (4) |
| N1—C4—C5 | 125.5 (2) | C23—C22—C21 | 120.7 (3) |
| N1—C4—C3 | 109.9 (2) | C23—C22—H22 | 119.6 |
| C5—C4—C3 | 124.6 (2) | C21—C22—H22 | 119.6 |
| C11—C16—C15 | 121.2 (3) | N4—C24—C20 | 177.9 (4) |
| C11—C16—H16 | 119.4 | C20—C19—C18 | 119.6 (3) |
| C15—C16—H16 | 119.4 | C20—C19—H19 | 120.2 |
| C14—C13—C12 | 120.0 (3) | C18—C19—H19 | 120.2 |
| C14—C13—H13 | 120.0 | C8—C7—C6 | 107.4 (2) |
| C12—C13—H13 | 120.0 | C8—C7—H7 | 126.3 |
| N2—C9—C10 | 125.7 (2) | C6—C7—H7 | 126.3 |
| N2—C9—C8 | 108.8 (2) | C14—C15—C16 | 118.9 (3) |
| C10—C9—C8 | 125.4 (2) | C14—C15—H15 | 120.6 |
| C13—C14—C15 | 120.5 (2) | C16—C15—H15 | 120.6 |
| C13—C14—C17 | 119.1 (3) | N1—C1—C10i | 126.1 (2) |
| C15—C14—C17 | 120.4 (3) | N1—C1—C2 | 109.5 (2) |
| C19—C18—C23 | 121.4 (3) | C10i—C1—C2 | 124.4 (2) |
| C19—C18—H18 | 119.3 | C3—C2—C1 | 107.1 (2) |
| C23—C18—H18 | 119.3 | C3—C2—H2 | 126.5 |
| C12—C11—C16 | 118.5 (2) | C1—C2—H2 | 126.5 |
| C12—C11—C5 | 120.5 (2) | C2—C3—C4 | 107.1 (2) |
| C16—C11—C5 | 121.0 (2) | C2—C3—H3 | 126.5 |
| C19—C20—C21 | 120.5 (3) | C4—C3—H3 | 126.5 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+5/2, y+1/2, −z+5/2; (iii) x−1/2, −y−1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JH2269).
References
- Bruker (2001). SAINT-Plus Bruker AXS Inc., Madison,Wisconsin, USA.
- Bruker (2004). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
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- Kumar, R. K., Balasubramanian, S. & Goldberg, I. (1998). Inorg. Chem. 37, 541–552. [DOI] [PubMed]
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- Sheldrick, G. M. (1995). SADABS University of Göttingen, Germany.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100849X/jh2269sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100849X/jh2269Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


