Abstract
In the title compound, [CdBr2(C12H19N3)], the CdII atom is coordinated by the three N atoms of the (1R,2R)-N-(pyridin-2-ylmethyl)cyclohexane-1,2-diamine ligand and a bromide ion in the basal plane, and by a second bromide in the apical position. The coordination environment can be described as distorted square pyramidal. The coordination of the enantiopure ligand to the metal atom renders the central N atom chiral with an S configuration, so the complex is enantiomerically pure and corresponds to the S,R,R diastereoisomer. In the crystal, the molecules are linked via weak N—H⋯Br hydrogen bonds into a chain parallel to the b axis.
Related literature
For related structures, see: Gou et al. (2010 ▶). For non-linear optical properties of chiral coordination polymers, see: He et al. (2010 ▶).
Experimental
Crystal data
[CdBr2(C12H19N3)]
M r = 477.52
Orthorhombic,
a = 8.7153 (16) Å
b = 9.1978 (17) Å
c = 19.759 (4) Å
V = 1583.9 (5) Å3
Z = 4
Mo Kα radiation
μ = 6.41 mm−1
T = 173 K
0.12 × 0.09 × 0.08 mm
Data collection
Bruker SMART APEX CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.513, T max = 0.628
9389 measured reflections
3048 independent reflections
2348 reflections with I > 2σ(I)
R int = 0.048
Refinement
R[F 2 > 2σ(F 2)] = 0.033
wR(F 2) = 0.052
S = 0.96
3048 reflections
163 parameters
H-atom parameters constrained
Δρmax = 0.49 e Å−3
Δρmin = −0.48 e Å−3
Absolute structure: Flack (1983 ▶), 1244 Friedel pairs
Flack parameter: 0.049 (11)
Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus (Bruker, 2000 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811007033/dn2658sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007033/dn2658Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3B⋯Br2i | 0.92 | 2.89 | 3.750 (5) | 156 |
| N3—H3C⋯Br1ii | 0.92 | 2.59 | 3.498 (5) | 168 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the Program for Young Excellent Talents in Southeast University for financial support.
supplementary crystallographic information
Comment
Recently, rational design and synthesis of chiral coordination polymers have been of great interests due to their potential utility in enantiomerically selective catalysis and separations, second-order nonlinearoptical (NLO) applications and luminescence (He et al., 2010). A simple and effective design route for such polymers is to appropriately organize the metal ions into ordered architectures by use of chiral ligands. Herein, we report a new chiral complex, Zn(pcd)Br2 (pcd = (1R,2R)-N1-(pyridin-2-ylmethyl)cyclohexane -1,2-diamine), with a enantiomerically pure pcd ligand.
The title compound is a mononuclear complex, in which the coordination environment of CdII ion can be described as distorted square-pyramidal, being surrounded by one tridentate ligand and two bromine anions (Fig. 1).
The molecules are linked to each other, via weak N—H···Br hydrogen bonds, into a one-dimensional hydrogen bonding network developping parallel to the b axis (Table 1, Fig. 2).
Experimental
(1R,2R)-N1-(pyridin-2-ylmethyl)cyclohexane -1,2-diamine (0.041 g, 0.2 mmol) dissolved in water (8 ml) was added to a methanol solution (10 ml) of CdBr2 (0.054 g, 0.2 mmol). The mixture solution was stirred for 1 h at room temperature and then filtered. The filtrate was allowed to evaporate slowly at room temperature. After 2 weeks, yellow block crystals were obtained in 32.5% yield (0.031 g).
Refinement
All H atoms were fixed geometrically and treated as riding with C—H = 0.93–0.97 Å and N—H = 0.92–0.93 Å with Uiso(H) = 1.2 Ueq(C or N) and Uiso(H) = 1.5 Ueq(O).
Figures
Fig. 1.
View of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.
Fig. 2.
Partial packing view showing the chain developping parallel to the b axis. H atoms not involved in hydrogen bondings have been omitted for clarity. H bonds are shown as dashed lines. [Symmetry codes: (i) -x+1, y-1/2, -z+1/2; (ii) -x+1, y+1/2, -z+1/2]
Crystal data
| [CdBr2(C12H19N3)] | F(000) = 920 |
| Mr = 477.52 | Dx = 2.003 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 792 reflections |
| a = 8.7153 (16) Å | θ = 2.5–28.0° |
| b = 9.1978 (17) Å | µ = 6.41 mm−1 |
| c = 19.759 (4) Å | T = 173 K |
| V = 1583.9 (5) Å3 | Block, yellow |
| Z = 4 | 0.12 × 0.09 × 0.08 mm |
Data collection
| Bruker SMART APEX CCD diffractometer | 3048 independent reflections |
| Radiation source: fine-focus sealed tube | 2348 reflections with I > 2σ(I) |
| graphite | Rint = 0.048 |
| φ and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = −10→9 |
| Tmin = 0.513, Tmax = 0.628 | k = −11→10 |
| 9389 measured reflections | l = −23→22 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
| wR(F2) = 0.052 | w = 1/[σ2(Fo2) + (0.0014P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3 |
| S = 0.96 | (Δ/σ)max < 0.001 |
| 3048 reflections | Δρmax = 0.49 e Å−3 |
| 163 parameters | Δρmin = −0.47 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1244 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.049 (11) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cd1 | 0.24783 (5) | 0.10173 (5) | 0.207493 (18) | 0.03280 (11) | |
| Br1 | 0.29207 (7) | −0.17278 (7) | 0.18146 (3) | 0.04158 (18) | |
| Br2 | 0.35856 (7) | 0.29959 (7) | 0.13039 (3) | 0.04411 (18) | |
| C1 | −0.0384 (8) | 0.1320 (7) | 0.0949 (3) | 0.052 (2) | |
| H1A | 0.0404 | 0.1650 | 0.0654 | 0.062* | |
| C2 | −0.1845 (8) | 0.1196 (8) | 0.0697 (3) | 0.062 (2) | |
| H2A | −0.2071 | 0.1427 | 0.0239 | 0.075* | |
| C3 | −0.2968 (8) | 0.0725 (8) | 0.1131 (4) | 0.065 (2) | |
| H3A | −0.3993 | 0.0630 | 0.0973 | 0.077* | |
| C4 | −0.2620 (8) | 0.0390 (7) | 0.1792 (3) | 0.0499 (16) | |
| H4A | −0.3396 | 0.0064 | 0.2094 | 0.060* | |
| C5 | −0.1119 (7) | 0.0538 (6) | 0.2009 (3) | 0.0353 (15) | |
| C6 | −0.0630 (6) | 0.0155 (7) | 0.2716 (3) | 0.0373 (16) | |
| H6A | −0.1516 | 0.0257 | 0.3026 | 0.045* | |
| H6B | −0.0290 | −0.0872 | 0.2728 | 0.045* | |
| C7 | 0.1349 (6) | 0.0623 (6) | 0.3592 (3) | 0.0336 (15) | |
| H7A | 0.1528 | −0.0449 | 0.3564 | 0.040* | |
| C8 | 0.0343 (7) | 0.0913 (8) | 0.4213 (3) | 0.0448 (18) | |
| H8A | 0.0029 | 0.1947 | 0.4214 | 0.054* | |
| H8B | −0.0599 | 0.0314 | 0.4181 | 0.054* | |
| C9 | 0.1152 (7) | 0.0572 (7) | 0.4877 (3) | 0.0508 (19) | |
| H9A | 0.0488 | 0.0868 | 0.5260 | 0.061* | |
| H9B | 0.1323 | −0.0490 | 0.4911 | 0.061* | |
| C10 | 0.2669 (8) | 0.1347 (7) | 0.4929 (3) | 0.0550 (19) | |
| H10A | 0.3191 | 0.1056 | 0.5353 | 0.066* | |
| H10B | 0.2492 | 0.2410 | 0.4946 | 0.066* | |
| C11 | 0.3695 (7) | 0.0987 (8) | 0.4326 (3) | 0.0499 (18) | |
| H11A | 0.4665 | 0.1542 | 0.4362 | 0.060* | |
| H11B | 0.3950 | −0.0062 | 0.4333 | 0.060* | |
| C12 | 0.2901 (6) | 0.1360 (6) | 0.3664 (2) | 0.0339 (15) | |
| H12A | 0.2723 | 0.2434 | 0.3659 | 0.041* | |
| N1 | −0.0014 (5) | 0.0998 (6) | 0.1591 (2) | 0.0377 (13) | |
| N2 | 0.0625 (4) | 0.1095 (6) | 0.2950 (2) | 0.0313 (12) | |
| H2B | 0.0265 | 0.2041 | 0.2997 | 0.038* | |
| N3 | 0.3872 (5) | 0.0999 (6) | 0.3071 (2) | 0.0366 (12) | |
| H3B | 0.4298 | 0.0093 | 0.3132 | 0.044* | |
| H3C | 0.4659 | 0.1662 | 0.3040 | 0.044* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cd1 | 0.0323 (2) | 0.0391 (3) | 0.02707 (19) | −0.0016 (3) | 0.0035 (2) | 0.0018 (2) |
| Br1 | 0.0462 (4) | 0.0380 (4) | 0.0405 (3) | 0.0053 (3) | −0.0043 (3) | 0.0000 (3) |
| Br2 | 0.0478 (4) | 0.0428 (4) | 0.0418 (3) | −0.0031 (4) | 0.0129 (3) | 0.0066 (3) |
| C1 | 0.056 (5) | 0.061 (6) | 0.039 (4) | 0.011 (4) | −0.004 (3) | −0.001 (4) |
| C2 | 0.070 (5) | 0.064 (6) | 0.053 (4) | 0.018 (5) | −0.020 (4) | −0.008 (4) |
| C3 | 0.047 (5) | 0.070 (6) | 0.076 (5) | 0.013 (4) | −0.023 (4) | −0.036 (5) |
| C4 | 0.036 (4) | 0.052 (4) | 0.061 (4) | 0.001 (4) | 0.001 (4) | −0.020 (3) |
| C5 | 0.029 (4) | 0.031 (4) | 0.046 (4) | 0.006 (3) | 0.002 (3) | −0.011 (3) |
| C6 | 0.034 (4) | 0.039 (4) | 0.039 (4) | −0.005 (3) | 0.006 (3) | −0.004 (3) |
| C7 | 0.036 (4) | 0.033 (4) | 0.032 (3) | −0.004 (3) | 0.004 (3) | 0.002 (3) |
| C8 | 0.051 (4) | 0.048 (5) | 0.035 (3) | −0.002 (4) | 0.010 (3) | −0.004 (4) |
| C9 | 0.067 (5) | 0.053 (5) | 0.032 (4) | −0.004 (4) | 0.017 (4) | 0.000 (3) |
| C10 | 0.072 (5) | 0.064 (5) | 0.029 (3) | −0.001 (5) | −0.008 (4) | −0.005 (3) |
| C11 | 0.051 (4) | 0.059 (5) | 0.040 (4) | −0.001 (4) | −0.002 (3) | 0.001 (4) |
| C12 | 0.041 (4) | 0.033 (4) | 0.028 (3) | −0.001 (3) | 0.005 (3) | −0.009 (3) |
| N1 | 0.041 (3) | 0.039 (3) | 0.034 (3) | 0.010 (3) | 0.001 (2) | −0.003 (3) |
| N2 | 0.032 (3) | 0.029 (3) | 0.032 (3) | −0.006 (2) | −0.001 (2) | −0.003 (3) |
| N3 | 0.034 (3) | 0.043 (3) | 0.032 (3) | −0.005 (3) | 0.001 (2) | −0.003 (3) |
Geometric parameters (Å, °)
| Cd1—N3 | 2.313 (4) | C7—C12 | 1.520 (7) |
| Cd1—N2 | 2.366 (4) | C7—C8 | 1.532 (7) |
| Cd1—N1 | 2.373 (5) | C7—H7A | 1.0000 |
| Cd1—Br2 | 2.5621 (8) | C8—C9 | 1.522 (7) |
| Cd1—Br1 | 2.6054 (9) | C8—H8A | 0.9900 |
| C1—N1 | 1.342 (7) | C8—H8B | 0.9900 |
| C1—C2 | 1.372 (8) | C9—C10 | 1.506 (8) |
| C1—H1A | 0.9500 | C9—H9A | 0.9900 |
| C2—C3 | 1.370 (9) | C9—H9B | 0.9900 |
| C2—H2A | 0.9500 | C10—C11 | 1.526 (7) |
| C3—C4 | 1.377 (8) | C10—H10A | 0.9900 |
| C3—H3A | 0.9500 | C10—H10B | 0.9900 |
| C4—C5 | 1.383 (8) | C11—C12 | 1.520 (7) |
| C4—H4A | 0.9500 | C11—H11A | 0.9900 |
| C5—N1 | 1.338 (7) | C11—H11B | 0.9900 |
| C5—C6 | 1.502 (7) | C12—N3 | 1.483 (6) |
| C6—N2 | 1.468 (7) | C12—H12A | 1.0000 |
| C6—H6A | 0.9900 | N2—H2B | 0.9300 |
| C6—H6B | 0.9900 | N3—H3B | 0.9200 |
| C7—N2 | 1.483 (6) | N3—H3C | 0.9200 |
| N3—Cd1—N2 | 74.77 (15) | C7—C8—H8B | 109.0 |
| N3—Cd1—N1 | 145.44 (16) | H8A—C8—H8B | 107.8 |
| N2—Cd1—N1 | 70.73 (15) | C10—C9—C8 | 111.6 (5) |
| N3—Cd1—Br2 | 108.26 (12) | C10—C9—H9A | 109.3 |
| N2—Cd1—Br2 | 132.07 (13) | C8—C9—H9A | 109.3 |
| N1—Cd1—Br2 | 96.34 (13) | C10—C9—H9B | 109.3 |
| N3—Cd1—Br1 | 94.77 (13) | C8—C9—H9B | 109.3 |
| N2—Cd1—Br1 | 105.92 (12) | H9A—C9—H9B | 108.0 |
| N1—Cd1—Br1 | 92.79 (13) | C9—C10—C11 | 111.0 (5) |
| Br2—Cd1—Br1 | 121.01 (3) | C9—C10—H10A | 109.4 |
| N1—C1—C2 | 123.2 (7) | C11—C10—H10A | 109.4 |
| N1—C1—H1A | 118.4 | C9—C10—H10B | 109.4 |
| C2—C1—H1A | 118.4 | C11—C10—H10B | 109.4 |
| C3—C2—C1 | 117.6 (6) | H10A—C10—H10B | 108.0 |
| C3—C2—H2A | 121.2 | C12—C11—C10 | 110.9 (5) |
| C1—C2—H2A | 121.2 | C12—C11—H11A | 109.5 |
| C2—C3—C4 | 120.5 (6) | C10—C11—H11A | 109.5 |
| C2—C3—H3A | 119.8 | C12—C11—H11B | 109.5 |
| C4—C3—H3A | 119.8 | C10—C11—H11B | 109.5 |
| C3—C4—C5 | 118.7 (6) | H11A—C11—H11B | 108.1 |
| C3—C4—H4A | 120.7 | N3—C12—C11 | 111.7 (4) |
| C5—C4—H4A | 120.7 | N3—C12—C7 | 109.5 (4) |
| N1—C5—C4 | 121.4 (6) | C11—C12—C7 | 112.7 (5) |
| N1—C5—C6 | 116.4 (5) | N3—C12—H12A | 107.6 |
| C4—C5—C6 | 122.2 (6) | C11—C12—H12A | 107.6 |
| N2—C6—C5 | 111.4 (5) | C7—C12—H12A | 107.6 |
| N2—C6—H6A | 109.3 | C5—N1—C1 | 118.7 (5) |
| C5—C6—H6A | 109.3 | C5—N1—Cd1 | 114.3 (4) |
| N2—C6—H6B | 109.3 | C1—N1—Cd1 | 126.8 (4) |
| C5—C6—H6B | 109.3 | C6—N2—C7 | 114.4 (4) |
| H6A—C6—H6B | 108.0 | C6—N2—Cd1 | 105.1 (3) |
| N2—C7—C12 | 109.1 (4) | C7—N2—Cd1 | 109.1 (3) |
| N2—C7—C8 | 113.1 (4) | C6—N2—H2B | 109.4 |
| C12—C7—C8 | 110.9 (5) | C7—N2—H2B | 109.4 |
| N2—C7—H7A | 107.8 | Cd1—N2—H2B | 109.4 |
| C12—C7—H7A | 107.8 | C12—N3—Cd1 | 111.8 (3) |
| C8—C7—H7A | 107.8 | C12—N3—H3B | 109.3 |
| C9—C8—C7 | 112.9 (5) | Cd1—N3—H3B | 109.3 |
| C9—C8—H8A | 109.0 | C12—N3—H3C | 109.3 |
| C7—C8—H8A | 109.0 | Cd1—N3—H3C | 109.3 |
| C9—C8—H8B | 109.0 | H3B—N3—H3C | 107.9 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3B···Br2i | 0.92 | 2.89 | 3.750 (5) | 156 |
| N3—H3C···Br1ii | 0.92 | 2.59 | 3.498 (5) | 168 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DN2658).
References
- Bruker (2000). SMART and SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
- Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Gou, S. H. & Tong, T. F. (2010). Faming Zhuanli Shenqing (P. R. China), p. 16.
- He, R., Song, H. H., Wei, Z., Zhang, J. J. & Gao, Y. Z. (2010). J. Solid State Chem. 183, 2021–2026.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811007033/dn2658sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007033/dn2658Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


