Abstract
In the title comound, C8H8N4S, one of the two independent molecules is essentially planar (r.m.s. deviation = 0.025 Å), while the other is slightly buckled (r.m.s. deviation = 0.131 Å) with the guanidine unit bent out of the plane of the fused-ring system by 16.8 (1)°. In the crystal, intermolecular N—H⋯N hydrogen bonds between the two independent molecules give rise to a hydrogen-bonded dimer. Addtional weak intermolecular N—H⋯N hydrogen bonds connect these dimers into chains along [010]. An intramolecular N—H⋯N hydrogen bond is also observed in each independent molecule.
Related literature
For the synthesis, see: Dolzhenko et al. (2006 ▶).
Experimental
Crystal data
C8H8N4S
M r = 192.24
Orthorhombic,
a = 10.2970 (3) Å
b = 10.0817 (3) Å
c = 33.5158 (11) Å
V = 3479.32 (18) Å3
Z = 16
Mo Kα radiation
μ = 0.33 mm−1
T = 295 K
0.30 × 0.30 × 0.30 mm
Data collection
Bruker APEXII diffractometer
35704 measured reflections
3996 independent reflections
3345 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.111
S = 1.13
3996 reflections
267 parameters
8 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.22 e Å−3
Δρmin = −0.28 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100732X/lh5214sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100732X/lh5214Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H31⋯N1 | 0.86 (1) | 2.00 (2) | 2.679 (2) | 134 (2) |
| N3—H32⋯N2i | 0.86 (1) | 2.40 (2) | 3.228 (2) | 161 (2) |
| N4—H41⋯N6 | 0.86 (1) | 2.25 (1) | 3.084 (3) | 165 (3) |
| N4—H42⋯N8i | 0.86 (1) | 2.50 (2) | 3.350 (3) | 176 (2) |
| N7—H71⋯N5 | 0.86 (1) | 2.03 (2) | 2.717 (3) | 136 (2) |
| N8—H81⋯N2 | 0.86 (1) | 2.24 (1) | 3.096 (3) | 177 (2) |
Symmetry code: (i)
.
Acknowledgments
We thank Manchester Metropolitan University, Baku State University and the University of Malaya for supporting this study.
supplementary crystallographic information
Comment
The title compound was synthesized as an intermediate for the synthesis of other heterocyclic compounds (Dolzhenko et al., 2006). In the title comound, C8H8N4, one of the two independent molecules of is essentially planar (r.m.s. deviation 0.025 Å) while the other is slightly buckled (r.m.s. deviation 0.131 Å) with the guanidine unit bent out of the plane of the fused-ring system by 16.8 (1) °. In the crystal a pair of intermolecular N-H···N hydrogen bonds between the two independent molecules give rise to a hydrogen-bonded dimer (Fig. 1). Addtional weak intermolecular N-H···N hydrogen bonds connect these dimers into one-dimensional chains along [010].
Experimental
2-Aminothiophenol (0.050 mol) was dissolved in 10% sulfuric acid (50 ml) and to the solution was added cyanoduanidine (0.075 mol). The mixture was heated to give a clear solution. To the cool solution was added 50% sodium hydroxide (10 mol) to precipitate the product. X-ray quality crystals were recrystallized from ethanol in 90% yield. The synthesis was based on a reported procedure (Dolzhenko et al., 2006).
Refinement
Carbon-bound H-atoms were placed in calculated positions [C–H 0.93 Å; Uiso(H) 1.2Ueq(C)] and were included in the refinement in a riding-model approximation. The amino H-atoms were located in a difference Fourier map, and were refined with a distance restraint of N–H 0.86±0.01 Å; the Uiso(H) values were refined.
Figures
Fig. 1.
Thermal ellipsoid plot (Barbour, 2001) of the two independent molecules of C8H8N4 with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius. Hydrogen bonds are denoted by dashed lines.
Crystal data
| C8H8N4S | F(000) = 1600 |
| Mr = 192.24 | Dx = 1.468 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 9882 reflections |
| a = 10.2970 (3) Å | θ = 2.3–27.7° |
| b = 10.0817 (3) Å | µ = 0.33 mm−1 |
| c = 33.5158 (11) Å | T = 295 K |
| V = 3479.32 (18) Å3 | Prism, colorless |
| Z = 16 | 0.30 × 0.30 × 0.30 mm |
Data collection
| Bruker APEXII diffractometer | 3345 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.026 |
| graphite | θmax = 27.5°, θmin = 2.3° |
| φ and ω scans | h = −13→13 |
| 35704 measured reflections | k = −13→13 |
| 3996 independent reflections | l = −43→43 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.13 | w = 1/[σ2(Fo2) + (0.0453P)2 + 1.2618P] where P = (Fo2 + 2Fc2)/3 |
| 3996 reflections | (Δ/σ)max = 0.001 |
| 267 parameters | Δρmax = 0.22 e Å−3 |
| 8 restraints | Δρmin = −0.28 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.48382 (5) | 0.66100 (5) | 0.659730 (17) | 0.05839 (16) | |
| S2 | 0.84372 (5) | 0.47427 (6) | 0.472576 (17) | 0.06418 (17) | |
| N1 | 0.55487 (14) | 0.42140 (14) | 0.67760 (4) | 0.0474 (3) | |
| N2 | 0.64035 (14) | 0.51382 (15) | 0.61637 (5) | 0.0485 (3) | |
| N3 | 0.71411 (18) | 0.29516 (18) | 0.62708 (6) | 0.0605 (4) | |
| H31 | 0.6709 (19) | 0.293 (2) | 0.6491 (4) | 0.064 (7)* | |
| H32 | 0.756 (2) | 0.2272 (16) | 0.6184 (7) | 0.073 (7)* | |
| N4 | 0.77196 (19) | 0.4128 (2) | 0.57119 (5) | 0.0649 (5) | |
| H41 | 0.753 (3) | 0.4781 (19) | 0.5560 (6) | 0.087 (9)* | |
| H42 | 0.8259 (19) | 0.3507 (18) | 0.5657 (7) | 0.071 (7)* | |
| N5 | 0.67826 (16) | 0.63000 (15) | 0.43811 (5) | 0.0537 (4) | |
| N6 | 0.66455 (16) | 0.61327 (15) | 0.51004 (5) | 0.0534 (4) | |
| N7 | 0.47131 (19) | 0.70197 (19) | 0.48350 (6) | 0.0612 (4) | |
| H71 | 0.505 (2) | 0.692 (3) | 0.4602 (4) | 0.079 (9)* | |
| H72 | 0.3919 (12) | 0.722 (2) | 0.4882 (7) | 0.074 (7)* | |
| N8 | 0.5036 (2) | 0.68148 (19) | 0.55135 (6) | 0.0649 (5) | |
| H81 | 0.539 (2) | 0.635 (2) | 0.5699 (5) | 0.066 (7)* | |
| H82 | 0.4247 (12) | 0.706 (3) | 0.5554 (7) | 0.082 (8)* | |
| C1 | 0.47271 (17) | 0.46403 (18) | 0.70777 (6) | 0.0477 (4) | |
| C2 | 0.4344 (2) | 0.3899 (2) | 0.74069 (6) | 0.0609 (5) | |
| H2 | 0.4661 | 0.3043 | 0.7443 | 0.073* | |
| C3 | 0.3497 (2) | 0.4436 (3) | 0.76785 (7) | 0.0682 (6) | |
| H3 | 0.3247 | 0.3939 | 0.7899 | 0.082* | |
| C4 | 0.3009 (2) | 0.5704 (2) | 0.76293 (7) | 0.0690 (6) | |
| H4 | 0.2434 | 0.6047 | 0.7817 | 0.083* | |
| C5 | 0.3367 (2) | 0.6461 (2) | 0.73061 (7) | 0.0626 (5) | |
| H5 | 0.3037 | 0.7312 | 0.7272 | 0.075* | |
| C6 | 0.42309 (18) | 0.59256 (18) | 0.70318 (6) | 0.0504 (4) | |
| C7 | 0.56907 (17) | 0.51333 (16) | 0.65055 (5) | 0.0448 (4) | |
| C8 | 0.70785 (17) | 0.40623 (18) | 0.60589 (6) | 0.0488 (4) | |
| C9 | 0.75591 (18) | 0.57694 (17) | 0.40817 (5) | 0.0495 (4) | |
| C10 | 0.7460 (2) | 0.6048 (2) | 0.36749 (6) | 0.0604 (5) | |
| H10 | 0.6833 | 0.6637 | 0.3582 | 0.072* | |
| C11 | 0.8292 (2) | 0.5445 (2) | 0.34137 (7) | 0.0640 (6) | |
| H11 | 0.8221 | 0.5624 | 0.3142 | 0.077* | |
| C12 | 0.9238 (2) | 0.4574 (2) | 0.35448 (7) | 0.0685 (6) | |
| H12 | 0.9791 | 0.4175 | 0.3361 | 0.082* | |
| C13 | 0.9367 (2) | 0.4293 (2) | 0.39439 (7) | 0.0697 (6) | |
| H13 | 1.0006 | 0.3712 | 0.4033 | 0.084* | |
| C14 | 0.85219 (19) | 0.48948 (19) | 0.42113 (6) | 0.0545 (5) | |
| C15 | 0.71308 (18) | 0.58623 (17) | 0.47312 (6) | 0.0494 (4) | |
| C16 | 0.5469 (2) | 0.66392 (17) | 0.51381 (6) | 0.0529 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0643 (3) | 0.0367 (2) | 0.0742 (3) | 0.0069 (2) | 0.0233 (2) | 0.0041 (2) |
| S2 | 0.0636 (3) | 0.0691 (3) | 0.0598 (3) | 0.0202 (3) | −0.0057 (2) | 0.0084 (2) |
| N1 | 0.0456 (8) | 0.0428 (7) | 0.0537 (8) | 0.0032 (6) | −0.0053 (6) | 0.0014 (6) |
| N2 | 0.0488 (8) | 0.0429 (8) | 0.0537 (8) | 0.0055 (6) | 0.0022 (7) | −0.0031 (6) |
| N3 | 0.0647 (11) | 0.0507 (9) | 0.0660 (11) | 0.0193 (8) | −0.0024 (9) | −0.0044 (8) |
| N4 | 0.0678 (11) | 0.0718 (12) | 0.0551 (10) | 0.0255 (10) | 0.0021 (8) | −0.0080 (9) |
| N5 | 0.0621 (9) | 0.0436 (8) | 0.0554 (9) | 0.0028 (7) | −0.0127 (7) | −0.0002 (7) |
| N6 | 0.0627 (10) | 0.0432 (8) | 0.0544 (9) | 0.0061 (7) | −0.0108 (7) | −0.0043 (7) |
| N7 | 0.0544 (10) | 0.0582 (10) | 0.0710 (12) | 0.0035 (8) | −0.0113 (9) | −0.0030 (9) |
| N8 | 0.0742 (13) | 0.0538 (10) | 0.0667 (12) | 0.0118 (9) | −0.0006 (10) | −0.0019 (8) |
| C1 | 0.0418 (9) | 0.0473 (9) | 0.0539 (10) | −0.0037 (7) | −0.0055 (7) | −0.0004 (8) |
| C2 | 0.0602 (12) | 0.0626 (12) | 0.0601 (12) | −0.0020 (10) | −0.0054 (9) | 0.0120 (9) |
| C3 | 0.0689 (14) | 0.0793 (15) | 0.0564 (12) | −0.0138 (12) | 0.0052 (10) | 0.0083 (11) |
| C4 | 0.0622 (12) | 0.0731 (14) | 0.0716 (14) | −0.0145 (11) | 0.0189 (11) | −0.0118 (11) |
| C5 | 0.0596 (12) | 0.0514 (11) | 0.0768 (14) | −0.0064 (9) | 0.0183 (10) | −0.0085 (10) |
| C6 | 0.0478 (9) | 0.0437 (9) | 0.0596 (11) | −0.0064 (8) | 0.0075 (8) | −0.0032 (8) |
| C7 | 0.0410 (8) | 0.0382 (8) | 0.0551 (10) | 0.0016 (7) | −0.0019 (7) | −0.0037 (7) |
| C8 | 0.0435 (9) | 0.0503 (10) | 0.0526 (10) | 0.0070 (8) | −0.0115 (8) | −0.0111 (8) |
| C9 | 0.0520 (10) | 0.0376 (8) | 0.0588 (10) | −0.0089 (8) | −0.0089 (8) | 0.0002 (8) |
| C10 | 0.0686 (12) | 0.0525 (11) | 0.0602 (11) | −0.0076 (10) | −0.0137 (10) | 0.0056 (9) |
| C11 | 0.0776 (14) | 0.0571 (12) | 0.0571 (12) | −0.0192 (11) | −0.0018 (10) | 0.0028 (9) |
| C12 | 0.0769 (15) | 0.0618 (12) | 0.0669 (13) | −0.0092 (11) | 0.0149 (11) | 0.0024 (10) |
| C13 | 0.0686 (13) | 0.0658 (13) | 0.0748 (14) | 0.0097 (11) | 0.0105 (11) | 0.0092 (11) |
| C14 | 0.0559 (11) | 0.0475 (10) | 0.0600 (11) | −0.0040 (8) | −0.0032 (9) | 0.0054 (8) |
| C15 | 0.0543 (10) | 0.0355 (8) | 0.0583 (10) | −0.0008 (7) | −0.0134 (8) | −0.0021 (7) |
| C16 | 0.0625 (11) | 0.0325 (8) | 0.0637 (11) | −0.0023 (8) | −0.0099 (9) | −0.0051 (8) |
Geometric parameters (Å, °)
| S1—C6 | 1.7285 (19) | N8—H81 | 0.860 (10) |
| S1—C7 | 1.7555 (17) | N8—H82 | 0.861 (10) |
| S2—C14 | 1.733 (2) | C1—C2 | 1.390 (3) |
| S2—C15 | 1.7562 (19) | C1—C6 | 1.401 (3) |
| N1—C7 | 1.305 (2) | C2—C3 | 1.372 (3) |
| N1—C1 | 1.387 (2) | C2—H2 | 0.9300 |
| N2—C8 | 1.335 (2) | C3—C4 | 1.383 (3) |
| N2—C7 | 1.360 (2) | C3—H3 | 0.9300 |
| N3—C8 | 1.328 (3) | C4—C5 | 1.375 (3) |
| N3—H31 | 0.863 (9) | C4—H4 | 0.9300 |
| N3—H32 | 0.860 (10) | C5—C6 | 1.389 (3) |
| N4—C8 | 1.339 (3) | C5—H5 | 0.9300 |
| N4—H41 | 0.855 (10) | C9—C10 | 1.396 (3) |
| N4—H42 | 0.857 (10) | C9—C14 | 1.396 (3) |
| N5—C15 | 1.304 (2) | C10—C11 | 1.368 (3) |
| N5—C9 | 1.390 (3) | C10—H10 | 0.9300 |
| N6—C16 | 1.321 (3) | C11—C12 | 1.382 (3) |
| N6—C15 | 1.362 (2) | C11—H11 | 0.9300 |
| N7—C16 | 1.336 (3) | C12—C13 | 1.374 (3) |
| N7—H71 | 0.862 (10) | C12—H12 | 0.9300 |
| N7—H72 | 0.856 (10) | C13—C14 | 1.388 (3) |
| N8—C16 | 1.347 (3) | C13—H13 | 0.9300 |
| C6—S1—C7 | 89.43 (9) | C5—C6—C1 | 121.36 (18) |
| C14—S2—C15 | 89.54 (9) | C5—C6—S1 | 129.38 (16) |
| C7—N1—C1 | 110.79 (15) | C1—C6—S1 | 109.25 (14) |
| C8—N2—C7 | 119.96 (16) | N1—C7—N2 | 130.40 (16) |
| C8—N3—H31 | 117.0 (16) | N1—C7—S1 | 115.11 (13) |
| C8—N3—H32 | 121.0 (16) | N2—C7—S1 | 114.48 (12) |
| H31—N3—H32 | 122 (2) | N3—C8—N2 | 124.73 (18) |
| C8—N4—H41 | 116.5 (19) | N3—C8—N4 | 118.86 (18) |
| C8—N4—H42 | 118.1 (17) | N2—C8—N4 | 116.41 (18) |
| H41—N4—H42 | 125 (2) | N5—C9—C10 | 125.84 (18) |
| C15—N5—C9 | 111.18 (16) | N5—C9—C14 | 115.27 (17) |
| C16—N6—C15 | 120.07 (16) | C10—C9—C14 | 118.89 (19) |
| C16—N7—H71 | 115.0 (18) | C11—C10—C9 | 119.3 (2) |
| C16—N7—H72 | 118.9 (17) | C11—C10—H10 | 120.3 |
| H71—N7—H72 | 125 (2) | C9—C10—H10 | 120.3 |
| C16—N8—H81 | 117.6 (16) | C10—C11—C12 | 121.4 (2) |
| C16—N8—H82 | 119.8 (17) | C10—C11—H11 | 119.3 |
| H81—N8—H82 | 116 (2) | C12—C11—H11 | 119.3 |
| N1—C1—C2 | 125.81 (18) | C13—C12—C11 | 120.6 (2) |
| N1—C1—C6 | 115.41 (16) | C13—C12—H12 | 119.7 |
| C2—C1—C6 | 118.76 (18) | C11—C12—H12 | 119.7 |
| C3—C2—C1 | 119.6 (2) | C12—C13—C14 | 118.5 (2) |
| C3—C2—H2 | 120.2 | C12—C13—H13 | 120.7 |
| C1—C2—H2 | 120.2 | C14—C13—H13 | 120.7 |
| C2—C3—C4 | 121.1 (2) | C13—C14—C9 | 121.3 (2) |
| C2—C3—H3 | 119.5 | C13—C14—S2 | 129.41 (17) |
| C4—C3—H3 | 119.5 | C9—C14—S2 | 109.25 (15) |
| C5—C4—C3 | 120.6 (2) | N5—C15—N6 | 130.46 (18) |
| C5—C4—H4 | 119.7 | N5—C15—S2 | 114.76 (15) |
| C3—C4—H4 | 119.7 | N6—C15—S2 | 114.79 (13) |
| C4—C5—C6 | 118.5 (2) | N6—C16—N7 | 124.9 (2) |
| C4—C5—H5 | 120.7 | N6—C16—N8 | 116.38 (18) |
| C6—C5—H5 | 120.7 | N7—C16—N8 | 118.7 (2) |
| C7—N1—C1—C2 | 178.46 (18) | C15—N5—C9—C10 | −178.95 (18) |
| C7—N1—C1—C6 | 0.1 (2) | C15—N5—C9—C14 | 0.4 (2) |
| N1—C1—C2—C3 | −178.35 (19) | N5—C9—C10—C11 | −179.80 (18) |
| C6—C1—C2—C3 | −0.1 (3) | C14—C9—C10—C11 | 0.9 (3) |
| C1—C2—C3—C4 | 0.4 (3) | C9—C10—C11—C12 | −0.6 (3) |
| C2—C3—C4—C5 | −0.2 (4) | C10—C11—C12—C13 | −0.1 (3) |
| C3—C4—C5—C6 | −0.2 (3) | C11—C12—C13—C14 | 0.5 (4) |
| C4—C5—C6—C1 | 0.5 (3) | C12—C13—C14—C9 | −0.1 (3) |
| C4—C5—C6—S1 | 178.91 (17) | C12—C13—C14—S2 | 179.90 (18) |
| N1—C1—C6—C5 | 178.08 (17) | N5—C9—C14—C13 | −179.97 (19) |
| C2—C1—C6—C5 | −0.4 (3) | C10—C9—C14—C13 | −0.6 (3) |
| N1—C1—C6—S1 | −0.6 (2) | N5—C9—C14—S2 | 0.0 (2) |
| C2—C1—C6—S1 | −179.04 (15) | C10—C9—C14—S2 | 179.40 (14) |
| C7—S1—C6—C5 | −177.9 (2) | C15—S2—C14—C13 | 179.7 (2) |
| C7—S1—C6—C1 | 0.65 (14) | C15—S2—C14—C9 | −0.30 (14) |
| C1—N1—C7—N2 | 179.79 (18) | C9—N5—C15—N6 | 179.41 (18) |
| C1—N1—C7—S1 | 0.39 (19) | C9—N5—C15—S2 | −0.6 (2) |
| C8—N2—C7—N1 | 1.6 (3) | C16—N6—C15—N5 | 19.2 (3) |
| C8—N2—C7—S1 | −178.99 (13) | C16—N6—C15—S2 | −160.82 (14) |
| C6—S1—C7—N1 | −0.63 (15) | C14—S2—C15—N5 | 0.53 (15) |
| C6—S1—C7—N2 | 179.88 (14) | C14—S2—C15—N6 | −179.47 (15) |
| C7—N2—C8—N3 | −1.5 (3) | C15—N6—C16—N7 | −5.5 (3) |
| C7—N2—C8—N4 | 177.80 (17) | C15—N6—C16—N8 | 176.74 (17) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H31···N1 | 0.86 (1) | 2.00 (2) | 2.679 (2) | 134 (2) |
| N3—H32···N2i | 0.86 (1) | 2.40 (2) | 3.228 (2) | 161 (2) |
| N4—H41···N6 | 0.86 (1) | 2.25 (1) | 3.084 (3) | 165 (3) |
| N4—H42···N8i | 0.86 (1) | 2.50 (2) | 3.350 (3) | 176 (2) |
| N7—H71···N5 | 0.86 (1) | 2.03 (2) | 2.717 (3) | 136 (2) |
| N8—H81···N2 | 0.86 (1) | 2.24 (1) | 3.096 (3) | 177 (2) |
Symmetry codes: (i) −x+3/2, y−1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5214).
References
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Bruker (2005). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Dolzhenko, A. V., Chui, W.-K. & Dolzhenko, A. V. (2006). Synthesis, pp. 597–602.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
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Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100732X/lh5214sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100732X/lh5214Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

