Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Mar 5;67(Pt 4):o786. doi: 10.1107/S160053681100732X

2-(1,3-Benzothia­zol-2-yl)guanidine

Shaaban Kamel Mohamed a, Mahmoud A A El-Remaily b, Ahmed M Soliman b, Atash V Gurbanov c, Seik Weng Ng d,*
PMCID: PMC3099861  PMID: 21754077

Abstract

In the title comound, C8H8N4S, one of the two independent mol­ecules is essentially planar (r.m.s. deviation = 0.025 Å), while the other is slightly buckled (r.m.s. deviation = 0.131 Å) with the guanidine unit bent out of the plane of the fused-ring system by 16.8 (1)°. In the crystal, inter­molecular N—H⋯N hydrogen bonds between the two independent mol­ecules give rise to a hydrogen-bonded dimer. Addtional weak inter­molecular N—H⋯N hydrogen bonds connect these dimers into chains along [010]. An intra­molecular N—H⋯N hydrogen bond is also observed in each independent mol­ecule.

Related literature

For the synthesis, see: Dolzhenko et al. (2006).graphic file with name e-67-0o786-scheme1.jpg

Experimental

Crystal data

  • C8H8N4S

  • M r = 192.24

  • Orthorhombic, Inline graphic

  • a = 10.2970 (3) Å

  • b = 10.0817 (3) Å

  • c = 33.5158 (11) Å

  • V = 3479.32 (18) Å3

  • Z = 16

  • Mo Kα radiation

  • μ = 0.33 mm−1

  • T = 295 K

  • 0.30 × 0.30 × 0.30 mm

Data collection

  • Bruker APEXII diffractometer

  • 35704 measured reflections

  • 3996 independent reflections

  • 3345 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.111

  • S = 1.13

  • 3996 reflections

  • 267 parameters

  • 8 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100732X/lh5214sup1.cif

e-67-0o786-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681100732X/lh5214Isup2.hkl

e-67-0o786-Isup2.hkl (195.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H31⋯N1 0.86 (1) 2.00 (2) 2.679 (2) 134 (2)
N3—H32⋯N2i 0.86 (1) 2.40 (2) 3.228 (2) 161 (2)
N4—H41⋯N6 0.86 (1) 2.25 (1) 3.084 (3) 165 (3)
N4—H42⋯N8i 0.86 (1) 2.50 (2) 3.350 (3) 176 (2)
N7—H71⋯N5 0.86 (1) 2.03 (2) 2.717 (3) 136 (2)
N8—H81⋯N2 0.86 (1) 2.24 (1) 3.096 (3) 177 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank Manchester Metropolitan University, Baku State University and the University of Malaya for supporting this study.

supplementary crystallographic information

Comment

The title compound was synthesized as an intermediate for the synthesis of other heterocyclic compounds (Dolzhenko et al., 2006). In the title comound, C8H8N4, one of the two independent molecules of is essentially planar (r.m.s. deviation 0.025 Å) while the other is slightly buckled (r.m.s. deviation 0.131 Å) with the guanidine unit bent out of the plane of the fused-ring system by 16.8 (1) °. In the crystal a pair of intermolecular N-H···N hydrogen bonds between the two independent molecules give rise to a hydrogen-bonded dimer (Fig. 1). Addtional weak intermolecular N-H···N hydrogen bonds connect these dimers into one-dimensional chains along [010].

Experimental

2-Aminothiophenol (0.050 mol) was dissolved in 10% sulfuric acid (50 ml) and to the solution was added cyanoduanidine (0.075 mol). The mixture was heated to give a clear solution. To the cool solution was added 50% sodium hydroxide (10 mol) to precipitate the product. X-ray quality crystals were recrystallized from ethanol in 90% yield. The synthesis was based on a reported procedure (Dolzhenko et al., 2006).

Refinement

Carbon-bound H-atoms were placed in calculated positions [C–H 0.93 Å; Uiso(H) 1.2Ueq(C)] and were included in the refinement in a riding-model approximation. The amino H-atoms were located in a difference Fourier map, and were refined with a distance restraint of N–H 0.86±0.01 Å; the Uiso(H) values were refined.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of the two independent molecules of C8H8N4 with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius. Hydrogen bonds are denoted by dashed lines.

Crystal data

C8H8N4S F(000) = 1600
Mr = 192.24 Dx = 1.468 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 9882 reflections
a = 10.2970 (3) Å θ = 2.3–27.7°
b = 10.0817 (3) Å µ = 0.33 mm1
c = 33.5158 (11) Å T = 295 K
V = 3479.32 (18) Å3 Prism, colorless
Z = 16 0.30 × 0.30 × 0.30 mm

Data collection

Bruker APEXII diffractometer 3345 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.026
graphite θmax = 27.5°, θmin = 2.3°
φ and ω scans h = −13→13
35704 measured reflections k = −13→13
3996 independent reflections l = −43→43

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111 H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.0453P)2 + 1.2618P] where P = (Fo2 + 2Fc2)/3
3996 reflections (Δ/σ)max = 0.001
267 parameters Δρmax = 0.22 e Å3
8 restraints Δρmin = −0.28 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.48382 (5) 0.66100 (5) 0.659730 (17) 0.05839 (16)
S2 0.84372 (5) 0.47427 (6) 0.472576 (17) 0.06418 (17)
N1 0.55487 (14) 0.42140 (14) 0.67760 (4) 0.0474 (3)
N2 0.64035 (14) 0.51382 (15) 0.61637 (5) 0.0485 (3)
N3 0.71411 (18) 0.29516 (18) 0.62708 (6) 0.0605 (4)
H31 0.6709 (19) 0.293 (2) 0.6491 (4) 0.064 (7)*
H32 0.756 (2) 0.2272 (16) 0.6184 (7) 0.073 (7)*
N4 0.77196 (19) 0.4128 (2) 0.57119 (5) 0.0649 (5)
H41 0.753 (3) 0.4781 (19) 0.5560 (6) 0.087 (9)*
H42 0.8259 (19) 0.3507 (18) 0.5657 (7) 0.071 (7)*
N5 0.67826 (16) 0.63000 (15) 0.43811 (5) 0.0537 (4)
N6 0.66455 (16) 0.61327 (15) 0.51004 (5) 0.0534 (4)
N7 0.47131 (19) 0.70197 (19) 0.48350 (6) 0.0612 (4)
H71 0.505 (2) 0.692 (3) 0.4602 (4) 0.079 (9)*
H72 0.3919 (12) 0.722 (2) 0.4882 (7) 0.074 (7)*
N8 0.5036 (2) 0.68148 (19) 0.55135 (6) 0.0649 (5)
H81 0.539 (2) 0.635 (2) 0.5699 (5) 0.066 (7)*
H82 0.4247 (12) 0.706 (3) 0.5554 (7) 0.082 (8)*
C1 0.47271 (17) 0.46403 (18) 0.70777 (6) 0.0477 (4)
C2 0.4344 (2) 0.3899 (2) 0.74069 (6) 0.0609 (5)
H2 0.4661 0.3043 0.7443 0.073*
C3 0.3497 (2) 0.4436 (3) 0.76785 (7) 0.0682 (6)
H3 0.3247 0.3939 0.7899 0.082*
C4 0.3009 (2) 0.5704 (2) 0.76293 (7) 0.0690 (6)
H4 0.2434 0.6047 0.7817 0.083*
C5 0.3367 (2) 0.6461 (2) 0.73061 (7) 0.0626 (5)
H5 0.3037 0.7312 0.7272 0.075*
C6 0.42309 (18) 0.59256 (18) 0.70318 (6) 0.0504 (4)
C7 0.56907 (17) 0.51333 (16) 0.65055 (5) 0.0448 (4)
C8 0.70785 (17) 0.40623 (18) 0.60589 (6) 0.0488 (4)
C9 0.75591 (18) 0.57694 (17) 0.40817 (5) 0.0495 (4)
C10 0.7460 (2) 0.6048 (2) 0.36749 (6) 0.0604 (5)
H10 0.6833 0.6637 0.3582 0.072*
C11 0.8292 (2) 0.5445 (2) 0.34137 (7) 0.0640 (6)
H11 0.8221 0.5624 0.3142 0.077*
C12 0.9238 (2) 0.4574 (2) 0.35448 (7) 0.0685 (6)
H12 0.9791 0.4175 0.3361 0.082*
C13 0.9367 (2) 0.4293 (2) 0.39439 (7) 0.0697 (6)
H13 1.0006 0.3712 0.4033 0.084*
C14 0.85219 (19) 0.48948 (19) 0.42113 (6) 0.0545 (5)
C15 0.71308 (18) 0.58623 (17) 0.47312 (6) 0.0494 (4)
C16 0.5469 (2) 0.66392 (17) 0.51381 (6) 0.0529 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0643 (3) 0.0367 (2) 0.0742 (3) 0.0069 (2) 0.0233 (2) 0.0041 (2)
S2 0.0636 (3) 0.0691 (3) 0.0598 (3) 0.0202 (3) −0.0057 (2) 0.0084 (2)
N1 0.0456 (8) 0.0428 (7) 0.0537 (8) 0.0032 (6) −0.0053 (6) 0.0014 (6)
N2 0.0488 (8) 0.0429 (8) 0.0537 (8) 0.0055 (6) 0.0022 (7) −0.0031 (6)
N3 0.0647 (11) 0.0507 (9) 0.0660 (11) 0.0193 (8) −0.0024 (9) −0.0044 (8)
N4 0.0678 (11) 0.0718 (12) 0.0551 (10) 0.0255 (10) 0.0021 (8) −0.0080 (9)
N5 0.0621 (9) 0.0436 (8) 0.0554 (9) 0.0028 (7) −0.0127 (7) −0.0002 (7)
N6 0.0627 (10) 0.0432 (8) 0.0544 (9) 0.0061 (7) −0.0108 (7) −0.0043 (7)
N7 0.0544 (10) 0.0582 (10) 0.0710 (12) 0.0035 (8) −0.0113 (9) −0.0030 (9)
N8 0.0742 (13) 0.0538 (10) 0.0667 (12) 0.0118 (9) −0.0006 (10) −0.0019 (8)
C1 0.0418 (9) 0.0473 (9) 0.0539 (10) −0.0037 (7) −0.0055 (7) −0.0004 (8)
C2 0.0602 (12) 0.0626 (12) 0.0601 (12) −0.0020 (10) −0.0054 (9) 0.0120 (9)
C3 0.0689 (14) 0.0793 (15) 0.0564 (12) −0.0138 (12) 0.0052 (10) 0.0083 (11)
C4 0.0622 (12) 0.0731 (14) 0.0716 (14) −0.0145 (11) 0.0189 (11) −0.0118 (11)
C5 0.0596 (12) 0.0514 (11) 0.0768 (14) −0.0064 (9) 0.0183 (10) −0.0085 (10)
C6 0.0478 (9) 0.0437 (9) 0.0596 (11) −0.0064 (8) 0.0075 (8) −0.0032 (8)
C7 0.0410 (8) 0.0382 (8) 0.0551 (10) 0.0016 (7) −0.0019 (7) −0.0037 (7)
C8 0.0435 (9) 0.0503 (10) 0.0526 (10) 0.0070 (8) −0.0115 (8) −0.0111 (8)
C9 0.0520 (10) 0.0376 (8) 0.0588 (10) −0.0089 (8) −0.0089 (8) 0.0002 (8)
C10 0.0686 (12) 0.0525 (11) 0.0602 (11) −0.0076 (10) −0.0137 (10) 0.0056 (9)
C11 0.0776 (14) 0.0571 (12) 0.0571 (12) −0.0192 (11) −0.0018 (10) 0.0028 (9)
C12 0.0769 (15) 0.0618 (12) 0.0669 (13) −0.0092 (11) 0.0149 (11) 0.0024 (10)
C13 0.0686 (13) 0.0658 (13) 0.0748 (14) 0.0097 (11) 0.0105 (11) 0.0092 (11)
C14 0.0559 (11) 0.0475 (10) 0.0600 (11) −0.0040 (8) −0.0032 (9) 0.0054 (8)
C15 0.0543 (10) 0.0355 (8) 0.0583 (10) −0.0008 (7) −0.0134 (8) −0.0021 (7)
C16 0.0625 (11) 0.0325 (8) 0.0637 (11) −0.0023 (8) −0.0099 (9) −0.0051 (8)

Geometric parameters (Å, °)

S1—C6 1.7285 (19) N8—H81 0.860 (10)
S1—C7 1.7555 (17) N8—H82 0.861 (10)
S2—C14 1.733 (2) C1—C2 1.390 (3)
S2—C15 1.7562 (19) C1—C6 1.401 (3)
N1—C7 1.305 (2) C2—C3 1.372 (3)
N1—C1 1.387 (2) C2—H2 0.9300
N2—C8 1.335 (2) C3—C4 1.383 (3)
N2—C7 1.360 (2) C3—H3 0.9300
N3—C8 1.328 (3) C4—C5 1.375 (3)
N3—H31 0.863 (9) C4—H4 0.9300
N3—H32 0.860 (10) C5—C6 1.389 (3)
N4—C8 1.339 (3) C5—H5 0.9300
N4—H41 0.855 (10) C9—C10 1.396 (3)
N4—H42 0.857 (10) C9—C14 1.396 (3)
N5—C15 1.304 (2) C10—C11 1.368 (3)
N5—C9 1.390 (3) C10—H10 0.9300
N6—C16 1.321 (3) C11—C12 1.382 (3)
N6—C15 1.362 (2) C11—H11 0.9300
N7—C16 1.336 (3) C12—C13 1.374 (3)
N7—H71 0.862 (10) C12—H12 0.9300
N7—H72 0.856 (10) C13—C14 1.388 (3)
N8—C16 1.347 (3) C13—H13 0.9300
C6—S1—C7 89.43 (9) C5—C6—C1 121.36 (18)
C14—S2—C15 89.54 (9) C5—C6—S1 129.38 (16)
C7—N1—C1 110.79 (15) C1—C6—S1 109.25 (14)
C8—N2—C7 119.96 (16) N1—C7—N2 130.40 (16)
C8—N3—H31 117.0 (16) N1—C7—S1 115.11 (13)
C8—N3—H32 121.0 (16) N2—C7—S1 114.48 (12)
H31—N3—H32 122 (2) N3—C8—N2 124.73 (18)
C8—N4—H41 116.5 (19) N3—C8—N4 118.86 (18)
C8—N4—H42 118.1 (17) N2—C8—N4 116.41 (18)
H41—N4—H42 125 (2) N5—C9—C10 125.84 (18)
C15—N5—C9 111.18 (16) N5—C9—C14 115.27 (17)
C16—N6—C15 120.07 (16) C10—C9—C14 118.89 (19)
C16—N7—H71 115.0 (18) C11—C10—C9 119.3 (2)
C16—N7—H72 118.9 (17) C11—C10—H10 120.3
H71—N7—H72 125 (2) C9—C10—H10 120.3
C16—N8—H81 117.6 (16) C10—C11—C12 121.4 (2)
C16—N8—H82 119.8 (17) C10—C11—H11 119.3
H81—N8—H82 116 (2) C12—C11—H11 119.3
N1—C1—C2 125.81 (18) C13—C12—C11 120.6 (2)
N1—C1—C6 115.41 (16) C13—C12—H12 119.7
C2—C1—C6 118.76 (18) C11—C12—H12 119.7
C3—C2—C1 119.6 (2) C12—C13—C14 118.5 (2)
C3—C2—H2 120.2 C12—C13—H13 120.7
C1—C2—H2 120.2 C14—C13—H13 120.7
C2—C3—C4 121.1 (2) C13—C14—C9 121.3 (2)
C2—C3—H3 119.5 C13—C14—S2 129.41 (17)
C4—C3—H3 119.5 C9—C14—S2 109.25 (15)
C5—C4—C3 120.6 (2) N5—C15—N6 130.46 (18)
C5—C4—H4 119.7 N5—C15—S2 114.76 (15)
C3—C4—H4 119.7 N6—C15—S2 114.79 (13)
C4—C5—C6 118.5 (2) N6—C16—N7 124.9 (2)
C4—C5—H5 120.7 N6—C16—N8 116.38 (18)
C6—C5—H5 120.7 N7—C16—N8 118.7 (2)
C7—N1—C1—C2 178.46 (18) C15—N5—C9—C10 −178.95 (18)
C7—N1—C1—C6 0.1 (2) C15—N5—C9—C14 0.4 (2)
N1—C1—C2—C3 −178.35 (19) N5—C9—C10—C11 −179.80 (18)
C6—C1—C2—C3 −0.1 (3) C14—C9—C10—C11 0.9 (3)
C1—C2—C3—C4 0.4 (3) C9—C10—C11—C12 −0.6 (3)
C2—C3—C4—C5 −0.2 (4) C10—C11—C12—C13 −0.1 (3)
C3—C4—C5—C6 −0.2 (3) C11—C12—C13—C14 0.5 (4)
C4—C5—C6—C1 0.5 (3) C12—C13—C14—C9 −0.1 (3)
C4—C5—C6—S1 178.91 (17) C12—C13—C14—S2 179.90 (18)
N1—C1—C6—C5 178.08 (17) N5—C9—C14—C13 −179.97 (19)
C2—C1—C6—C5 −0.4 (3) C10—C9—C14—C13 −0.6 (3)
N1—C1—C6—S1 −0.6 (2) N5—C9—C14—S2 0.0 (2)
C2—C1—C6—S1 −179.04 (15) C10—C9—C14—S2 179.40 (14)
C7—S1—C6—C5 −177.9 (2) C15—S2—C14—C13 179.7 (2)
C7—S1—C6—C1 0.65 (14) C15—S2—C14—C9 −0.30 (14)
C1—N1—C7—N2 179.79 (18) C9—N5—C15—N6 179.41 (18)
C1—N1—C7—S1 0.39 (19) C9—N5—C15—S2 −0.6 (2)
C8—N2—C7—N1 1.6 (3) C16—N6—C15—N5 19.2 (3)
C8—N2—C7—S1 −178.99 (13) C16—N6—C15—S2 −160.82 (14)
C6—S1—C7—N1 −0.63 (15) C14—S2—C15—N5 0.53 (15)
C6—S1—C7—N2 179.88 (14) C14—S2—C15—N6 −179.47 (15)
C7—N2—C8—N3 −1.5 (3) C15—N6—C16—N7 −5.5 (3)
C7—N2—C8—N4 177.80 (17) C15—N6—C16—N8 176.74 (17)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N3—H31···N1 0.86 (1) 2.00 (2) 2.679 (2) 134 (2)
N3—H32···N2i 0.86 (1) 2.40 (2) 3.228 (2) 161 (2)
N4—H41···N6 0.86 (1) 2.25 (1) 3.084 (3) 165 (3)
N4—H42···N8i 0.86 (1) 2.50 (2) 3.350 (3) 176 (2)
N7—H71···N5 0.86 (1) 2.03 (2) 2.717 (3) 136 (2)
N8—H81···N2 0.86 (1) 2.24 (1) 3.096 (3) 177 (2)

Symmetry codes: (i) −x+3/2, y−1/2, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5214).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  2. Bruker (2005). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Dolzhenko, A. V., Chui, W.-K. & Dolzhenko, A. V. (2006). Synthesis, pp. 597–602.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100732X/lh5214sup1.cif

e-67-0o786-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681100732X/lh5214Isup2.hkl

e-67-0o786-Isup2.hkl (195.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES