Abstract
In the title compound, C13H10FNO5S, the dihedral angle between the benzene rings is 47.63 (14)°. In the crystal, π–π stacking occurs between nearly parallel benzene rings of adjacent molecules, the centroid–centroid distance being 3.7806 (16) Å. Weak intermolecular C—H⋯O hydrogen bonding is also present in the crystal structure.
Related literature
For related compounds and their biological activity, see: Cho et al. (2003) ▶; Marson et al. (2007 ▶).
Experimental
Crystal data
C13H10FNO5S
M r = 311.28
Orthorhombic,
a = 14.2596 (5) Å
b = 11.4800 (3) Å
c = 8.3602 (2) Å
V = 1368.57 (7) Å3
Z = 4
Mo Kα radiation
μ = 0.27 mm−1
T = 293 K
0.30 × 0.30 × 0.20 mm
Data collection
Oxford Diffraction Xcalibur Eos diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.979, T max = 1.0
10802 measured reflections
2251 independent reflections
1855 reflections with I > 2σ(I)
R int = 0.025
Refinement
R[F 2 > 2σ(F 2)] = 0.034
wR(F 2) = 0.083
S = 1.05
2251 reflections
191 parameters
1 restraint
H-atom parameters constrained
Δρmax = 0.12 e Å−3
Δρmin = −0.23 e Å−3
Absolute structure: Flack (1983 ▶), 752 Friedel pairs
Flack parameter: −0.06 (9)
Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005903/xu5126sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005903/xu5126Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C6—H6⋯O2i | 0.93 | 2.55 | 3.224 (4) | 129 |
Symmetry code: (i)
.
Acknowledgments
We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.
supplementary crystallographic information
Comment
Aryloxyalkanoic acid hydroxyamides are potent inhibitors of histone deacetylase (Marson et al., 2007; Cho et al., 2003). 3-Fluoro-4-nitrophenyl 4-methylbenzenesulfonate is one of the key intermediates to synthesize the aryloxyalkanoic acid hydroxyamides derivatives. We report here its crystal structure. In the title compound (Fig. 1), the dihedral angle between the 3-fluoro-4-nitrophenyl ring and the 4-methylbenzene ring is 47.63 (14)°. In the crystal, intermolecular π-π stacking [centroid–centroid distance = 3.7806 (16) Å] stabilizes the structure (Fig. 2). Weak C—H···O hydrogen bonding is present in the crystal structure (Table 1).
Experimental
To the 3-fluoro-4-nitrophenol (19.10 mmol) in chloroform (20 ml) at 273 K were added pyridine (3.70 ml, 45.84 mmol) dropwise over a period of 20 min and p-toluenesulfonyl chloride (22.92 mmol) in small portions. This reaction mixture was stirred at room temperature for 12 h and diluted with dichloromethane and then 10% aqueous HCl. The separated organic layer was washed with 10% aqueous HCl, water and saturated aqueous NaCl; dried over NaSO4; and concentrated in vacuo. The crude 3-fluoro-4-nitrophenyl 4-methylbenzenesulfonate were purified by recrystallization. Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of ethanol.
Refinement
H atoms were positioned geometrically and refined using a riding model with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic H atoms and C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for methyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.
Fig. 2.
The cell packing of the title compound.
Crystal data
| C13H10FNO5S | F(000) = 640 |
| Mr = 311.28 | Dx = 1.511 Mg m−3 |
| Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.7107 Å |
| Hall symbol: P 2c -2n | Cell parameters from 4234 reflections |
| a = 14.2596 (5) Å | θ = 2.9–29.1° |
| b = 11.4800 (3) Å | µ = 0.27 mm−1 |
| c = 8.3602 (2) Å | T = 293 K |
| V = 1368.57 (7) Å3 | Block, colorless |
| Z = 4 | 0.30 × 0.30 × 0.20 mm |
Data collection
| Oxford Diffraction Xcalibur Eos diffractometer | 2251 independent reflections |
| Radiation source: fine-focus sealed tube | 1855 reflections with I > 2σ(I) |
| graphite | Rint = 0.025 |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 2.9° |
| ω scans | h = −17→17 |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | k = −14→14 |
| Tmin = 0.979, Tmax = 1.0 | l = −7→10 |
| 10802 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
| wR(F2) = 0.083 | w = 1/[σ2(Fo2) + (0.039P)2 + 0.1799P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max = 0.025 |
| 2251 reflections | Δρmax = 0.12 e Å−3 |
| 191 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 752 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.06 (9) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.16636 (4) | 0.27076 (5) | 0.58998 (10) | 0.05567 (19) | |
| F1 | 0.34171 (15) | −0.14722 (14) | 0.6292 (3) | 0.1007 (7) | |
| O1 | 0.56870 (17) | −0.0441 (2) | 0.8899 (4) | 0.0906 (8) | |
| O2 | 0.51366 (19) | −0.1649 (2) | 0.7187 (3) | 0.1041 (9) | |
| O3 | 0.18775 (13) | 0.20401 (17) | 0.7566 (2) | 0.0574 (5) | |
| O4 | 0.16341 (14) | 0.18606 (19) | 0.4665 (3) | 0.0675 (6) | |
| O5 | 0.08578 (12) | 0.33777 (18) | 0.6260 (3) | 0.0788 (7) | |
| N1 | 0.5080 (2) | −0.0778 (2) | 0.7989 (3) | 0.0675 (7) | |
| C1 | 0.4217 (2) | −0.0077 (2) | 0.7863 (4) | 0.0523 (7) | |
| C2 | 0.3442 (2) | −0.0442 (2) | 0.7026 (4) | 0.0601 (8) | |
| C3 | 0.2660 (2) | 0.0248 (2) | 0.6906 (4) | 0.0580 (7) | |
| H3 | 0.2136 | −0.0003 | 0.6341 | 0.070* | |
| C4 | 0.26682 (18) | 0.1317 (2) | 0.7636 (3) | 0.0474 (6) | |
| C5 | 0.3427 (2) | 0.1698 (2) | 0.8491 (4) | 0.0548 (7) | |
| H5 | 0.3417 | 0.2424 | 0.8987 | 0.066* | |
| C6 | 0.4204 (2) | 0.0995 (2) | 0.8609 (4) | 0.0566 (7) | |
| H6 | 0.4722 | 0.1243 | 0.9192 | 0.068* | |
| C7 | 0.26414 (17) | 0.3597 (2) | 0.5642 (3) | 0.0468 (6) | |
| C8 | 0.33831 (18) | 0.3209 (2) | 0.4704 (4) | 0.0532 (7) | |
| H8 | 0.3359 | 0.2483 | 0.4213 | 0.064* | |
| C9 | 0.41530 (18) | 0.3917 (2) | 0.4512 (4) | 0.0538 (7) | |
| H9 | 0.4659 | 0.3650 | 0.3914 | 0.065* | |
| C10 | 0.41940 (19) | 0.5008 (2) | 0.5179 (3) | 0.0519 (7) | |
| C11 | 0.34570 (19) | 0.5373 (2) | 0.6128 (4) | 0.0584 (7) | |
| H11 | 0.3483 | 0.6103 | 0.6609 | 0.070* | |
| C12 | 0.26858 (19) | 0.4679 (2) | 0.6375 (3) | 0.0551 (7) | |
| H12 | 0.2198 | 0.4931 | 0.7028 | 0.066* | |
| C13 | 0.5028 (2) | 0.5786 (3) | 0.4867 (5) | 0.0752 (9) | |
| H13A | 0.4860 | 0.6370 | 0.4096 | 0.113* | |
| H13B | 0.5537 | 0.5327 | 0.4460 | 0.113* | |
| H13C | 0.5215 | 0.6155 | 0.5847 | 0.113* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0420 (3) | 0.0668 (4) | 0.0582 (4) | 0.0045 (3) | −0.0005 (4) | 0.0083 (4) |
| F1 | 0.1299 (17) | 0.0508 (9) | 0.1214 (18) | 0.0063 (10) | −0.0321 (16) | −0.0197 (11) |
| O1 | 0.0640 (15) | 0.0999 (18) | 0.108 (2) | 0.0104 (14) | −0.0161 (15) | 0.0259 (17) |
| O2 | 0.135 (2) | 0.0934 (17) | 0.0836 (18) | 0.0580 (16) | −0.0025 (17) | −0.0028 (15) |
| O3 | 0.0489 (11) | 0.0689 (12) | 0.0543 (12) | 0.0047 (9) | 0.0104 (10) | 0.0087 (10) |
| O4 | 0.0635 (14) | 0.0765 (13) | 0.0625 (13) | −0.0099 (10) | −0.0104 (11) | −0.0038 (11) |
| O5 | 0.0452 (11) | 0.0901 (14) | 0.1011 (19) | 0.0158 (9) | 0.0081 (13) | 0.0152 (14) |
| N1 | 0.0737 (19) | 0.0709 (17) | 0.0579 (17) | 0.0151 (14) | 0.0075 (15) | 0.0231 (15) |
| C1 | 0.0533 (18) | 0.0547 (16) | 0.0487 (17) | 0.0054 (12) | 0.0020 (14) | 0.0132 (14) |
| C2 | 0.078 (2) | 0.0415 (14) | 0.0605 (19) | −0.0031 (14) | −0.0059 (17) | 0.0043 (14) |
| C3 | 0.0585 (17) | 0.0529 (15) | 0.0627 (19) | −0.0129 (13) | −0.0115 (15) | 0.0035 (14) |
| C4 | 0.0457 (14) | 0.0534 (14) | 0.0430 (15) | −0.0017 (11) | 0.0040 (13) | 0.0085 (12) |
| C5 | 0.0580 (17) | 0.0520 (15) | 0.0543 (17) | −0.0027 (13) | −0.0022 (15) | 0.0005 (13) |
| C6 | 0.0557 (18) | 0.0606 (17) | 0.0534 (18) | −0.0076 (14) | −0.0060 (15) | 0.0069 (14) |
| C7 | 0.0431 (13) | 0.0520 (13) | 0.0453 (17) | 0.0104 (10) | 0.0012 (13) | 0.0046 (13) |
| C8 | 0.0524 (16) | 0.0467 (13) | 0.0604 (17) | 0.0088 (12) | 0.0042 (15) | −0.0067 (13) |
| C9 | 0.0453 (15) | 0.0563 (16) | 0.0597 (18) | 0.0090 (12) | 0.0078 (14) | −0.0005 (14) |
| C10 | 0.0506 (16) | 0.0555 (16) | 0.0497 (17) | 0.0051 (12) | −0.0056 (13) | 0.0021 (12) |
| C11 | 0.0692 (18) | 0.0491 (13) | 0.0568 (18) | 0.0042 (12) | −0.0026 (18) | −0.0081 (14) |
| C12 | 0.0601 (17) | 0.0582 (15) | 0.0471 (17) | 0.0176 (12) | 0.0093 (14) | −0.0015 (13) |
| C13 | 0.069 (2) | 0.0714 (19) | 0.085 (2) | −0.0119 (15) | 0.001 (2) | −0.0069 (18) |
Geometric parameters (Å, °)
| S1—O3 | 1.619 (2) | C5—C6 | 1.374 (4) |
| S1—O4 | 1.419 (2) | C6—H6 | 0.9300 |
| S1—O5 | 1.4152 (19) | C7—C8 | 1.390 (4) |
| S1—C7 | 1.741 (3) | C7—C12 | 1.386 (3) |
| F1—C2 | 1.332 (3) | C8—H8 | 0.9300 |
| O1—N1 | 1.216 (4) | C8—C9 | 1.375 (3) |
| O2—N1 | 1.206 (3) | C9—H9 | 0.9300 |
| O3—C4 | 1.401 (3) | C9—C10 | 1.373 (4) |
| N1—C1 | 1.475 (4) | C10—C11 | 1.382 (4) |
| C1—C2 | 1.374 (4) | C10—C13 | 1.509 (4) |
| C1—C6 | 1.380 (4) | C11—H11 | 0.9300 |
| C2—C3 | 1.372 (4) | C11—C12 | 1.374 (4) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.371 (4) | C13—H13A | 0.9600 |
| C4—C5 | 1.369 (4) | C13—H13B | 0.9600 |
| C5—H5 | 0.9300 | C13—H13C | 0.9600 |
| F1—C2—C1 | 121.8 (3) | C6—C1—N1 | 117.8 (3) |
| F1—C2—C3 | 117.2 (3) | C6—C5—H5 | 120.4 |
| O1—N1—C1 | 117.7 (3) | C7—C8—H8 | 120.5 |
| O2—N1—O1 | 124.3 (3) | C7—C12—H12 | 120.3 |
| O2—N1—C1 | 118.0 (3) | C8—C7—S1 | 119.45 (19) |
| O3—S1—C7 | 103.48 (11) | C8—C9—H9 | 119.1 |
| O4—S1—O3 | 107.89 (11) | C9—C8—C7 | 119.0 (2) |
| O4—S1—C7 | 109.59 (13) | C9—C8—H8 | 120.5 |
| O5—S1—O3 | 103.14 (14) | C9—C10—C11 | 118.5 (2) |
| O5—S1—O4 | 120.23 (14) | C9—C10—C13 | 120.2 (3) |
| O5—S1—C7 | 110.97 (11) | C10—C9—C8 | 121.7 (2) |
| C1—C6—H6 | 119.9 | C10—C9—H9 | 119.1 |
| C2—C1—N1 | 122.7 (3) | C10—C11—H11 | 119.4 |
| C2—C1—C6 | 119.5 (3) | C10—C13—H13A | 109.5 |
| C2—C3—H3 | 120.7 | C10—C13—H13B | 109.5 |
| C3—C2—C1 | 121.0 (3) | C10—C13—H13C | 109.5 |
| C3—C4—O3 | 120.3 (2) | C11—C10—C13 | 121.3 (3) |
| C4—O3—S1 | 117.93 (16) | C11—C12—C7 | 119.3 (2) |
| C4—C3—C2 | 118.6 (3) | C11—C12—H12 | 120.3 |
| C4—C3—H3 | 120.7 | C12—C7—S1 | 120.46 (19) |
| C4—C5—H5 | 120.4 | C12—C7—C8 | 120.1 (2) |
| C4—C5—C6 | 119.1 (3) | C12—C11—C10 | 121.3 (2) |
| C5—C4—O3 | 118.0 (2) | C12—C11—H11 | 119.4 |
| C5—C4—C3 | 121.7 (2) | H13A—C13—H13B | 109.5 |
| C5—C6—C1 | 120.2 (3) | H13A—C13—H13C | 109.5 |
| C5—C6—H6 | 119.9 | H13B—C13—H13C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C6—H6···O2i | 0.93 | 2.55 | 3.224 (4) | 129 |
Symmetry codes: (i) −x+1, −y, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5126).
References
- Cho, C. H., Yun, H. S. & Park, K. Y. (2003). J. Org. Chem. 68, 3017–3025. [DOI] [PubMed]
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Marson, C. M., Mahadevan, T., Dines, J., Sengmany, S., Morrel, J. M., Alao, J. P., Joel, S. P., Vigushin, D. M. & Coombes, R. C. (2007). Bioorg. Med. Chem. Lett. 17, 136–141. [DOI] [PubMed]
- Oxford Diffraction (2006). CrysAlis PRO Oxford Diffraction Ltd, Abingdon, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005903/xu5126sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005903/xu5126Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


