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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Mar 31;67(Pt 4):o1002. doi: 10.1107/S1600536811010981

1-Cyclo­hexyl­sulfinyl-2-methyl­naphtho­[2,1-b]furan

Hong Dae Choi a, Pil Ja Seo a, Byeng Wha Son b, Uk Lee b,*
PMCID: PMC3100045  PMID: 21754023

Abstract

In the title compound, C19H20O2S, the cyclo­hexyl ring adopts a chair conformation and the aryl­sulfinyl unit is positioned equatorial relative to the cyclo­hexyl group. In the crystal, mol­ecules are linked through weak inter­molecular C—H⋯O hydrogen bonds. The O atom of the sulfinyl group is disordered over two orientations with site-occupancy factors of 0.923 (3) and 0.077 (3).

Related literature

For the pharmacological activity of naphtho­furan compounds, see: Einhorn et al. (1984 ▶); Hranjec et al. (2003 ▶); Mahadevan & Vaidya (2003 ▶). For structural studies of related 2-methyl­naphtho­[2,1-b]furan derivatives, see: Choi et al. (2006 ▶, 2007 ▶).graphic file with name e-67-o1002-scheme1.jpg

Experimental

Crystal data

  • C19H20O2S

  • M r = 312.41

  • Monoclinic, Inline graphic

  • a = 5.8424 (1) Å

  • b = 19.5900 (3) Å

  • c = 13.4314 (2) Å

  • β = 92.649 (1)°

  • V = 1535.62 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 173 K

  • 0.42 × 0.34 × 0.26 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.916, T max = 0.946

  • 14260 measured reflections

  • 3527 independent reflections

  • 3026 reflections with I > 2σ(I)

  • R int = 0.037

Refinement

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.104

  • S = 1.06

  • 3527 reflections

  • 210 parameters

  • 4 restraints

  • H-atom parameters constrained

  • Δρmax = 0.56 e Å−3

  • Δρmin = −0.49 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010981/fl2340sup1.cif

e-67-o1002-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010981/fl2340Isup2.hkl

e-67-o1002-Isup2.hkl (173KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C13—H13B⋯O2Bi 0.98 2.12 2.848 (6) 130
C14—H14⋯O2Aii 1.00 2.38 3.2947 (19) 152

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Many compounds containing a naphthofuran ring have attracted much attention owing to their potent pharmacological properties such as antibacterial, antitumor and anthelmintic activities (Einhorn et al. , 1984, Hranjec et al., 2003, Mahadevan & Vaidya, 2003). As a part of our ongoing studies of the substituent effect on the solid state structures of 2-methylnaphtho[2,1-b]furan analogues (Choi et al., 2006, 2007), we report herein the crystal structure of the title compound.

In the title molecule (Fig. 1), the naphthofuran unit is essentially planar, with a mean deviation of 0.014 (1) Å from the least-squares plane defined by the thirteen constituent atoms. The cyclohexyl ring is in the chair form and arylsulfinyl moiety is positioned equatorial relative to the cyclohexyl group. The O atom of the sulfinyl group is disordered over two positions with site-occupancy factors, from refinement, of 0.923 (3) (part A) and 0.077 (3) (part B). The crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···O hydrogen bonds; the first one between a methyl H atom and and one of the disordered sulfinyl oxygen atoms(Table 1; C13—H13B···O2Bi), and the second one between a cyclohexyl H atom and the other disordered sulfinyl oxygen (Table 1; C14—H14···O2Aii).

Experimental

77% 3-chloroperoxybenzoic acid (291 mg, 1.3 mmol) was added in small portions to a stirred solution of 1-cyclohexylsulfanyl-2-methylnaphtho[2,1-b] furan (355 mg, 1.2 mmol) in dichloromethane (40 mL) at 273 K. After being stirred at room temperature for 8h, the mixture was washed with a saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane-ethyl acetate, 4:1 v/v) to afford the title compound as a colorless solid [yield 74%, m.p. 429–430 K; Rf = 0.61 (hexane–ethyl acetate, 4:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation frroomm acetone at room temperature

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) =1.2Ueq(C) for aryl, methine and methylene, and 1.5Ueq(C) for methyl H atoms. The O atom of sulfinyl group is disordered over two positions with site-ccupancy factors, from refinement of 0.923 (3) (part A) and 0.077 (3) (part B). The S—O distances were restrained to be within 0.001 Å of one another using the SADI and DELU commands.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius. The O atom of sulfinyl group is disordered over two positions with site-occupancy factors, from refinement of 0.923 (3) (part A) and 0.077 (3) (part B).

Fig. 2.

Fig. 2.

A view of the C—H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) x - 1/2, -y + 3/2,z - 1/2; (ii) x + 1, y, z; (iii) x + 1/2, - y + 3/2, z + 1/2 ; (iv) x - 1, y, z.]

Crystal data

C19H20O2S F(000) = 664
Mr = 312.41 Dx = 1.351 Mg m−3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 6431 reflections
a = 5.8424 (1) Å θ = 2.6–27.5°
b = 19.5900 (3) Å µ = 0.22 mm−1
c = 13.4314 (2) Å T = 173 K
β = 92.649 (1)° Block, colourless
V = 1535.62 (4) Å3 0.42 × 0.34 × 0.26 mm
Z = 4

Data collection

Bruker SMART APEXII CCD diffractometer 3527 independent reflections
Radiation source: rotating anode 3026 reflections with I > 2σ(I)
graphite multilayer Rint = 0.037
Detector resolution: 10.0 pixels mm-1 θmax = 27.5°, θmin = 1.8°
φ and ω scans h = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −21→25
Tmin = 0.916, Tmax = 0.946 l = −17→13
14260 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: difference Fourier map
wR(F2) = 0.104 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0439P)2 + 0.6943P] where P = (Fo2 + 2Fc2)/3
3527 reflections (Δ/σ)max = 0.001
210 parameters Δρmax = 0.56 e Å−3
4 restraints Δρmin = −0.49 e Å−3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 0.41951 (7) 0.69277 (2) 0.70702 (3) 0.02494 (12)
O1 0.37126 (19) 0.80010 (6) 0.45636 (8) 0.0279 (3)
O2A 0.1985 (2) 0.65645 (7) 0.69667 (10) 0.0324 (4) 0.923 (3)
O2B 0.428 (3) 0.7216 (7) 0.8085 (4) 0.032 (4) 0.077 (3)
C1 0.4458 (3) 0.74856 (8) 0.60361 (11) 0.0217 (3)
C2 0.6184 (3) 0.80058 (8) 0.59149 (11) 0.0223 (3)
C3 0.8144 (3) 0.82508 (8) 0.64850 (12) 0.0240 (3)
C4 0.8863 (3) 0.80032 (9) 0.74330 (12) 0.0275 (4)
H4 0.8002 0.7656 0.7738 0.033*
C5 1.0795 (3) 0.82587 (10) 0.79219 (13) 0.0349 (4)
H5 1.1264 0.8085 0.8559 0.042*
C6 1.2078 (3) 0.87735 (10) 0.74869 (15) 0.0394 (5)
H6 1.3410 0.8947 0.7831 0.047*
C7 1.1428 (3) 0.90261 (9) 0.65739 (15) 0.0363 (4)
H7 1.2316 0.9375 0.6288 0.044*
C8 0.9452 (3) 0.87778 (8) 0.60411 (13) 0.0287 (4)
C9 0.8795 (3) 0.90357 (9) 0.50783 (14) 0.0346 (4)
H9 0.9706 0.9381 0.4796 0.042*
C10 0.6905 (3) 0.88046 (9) 0.45488 (14) 0.0338 (4)
H10 0.6470 0.8981 0.3909 0.041*
C11 0.5645 (3) 0.82935 (8) 0.49987 (12) 0.0261 (3)
C12 0.3020 (3) 0.75066 (8) 0.52147 (12) 0.0245 (3)
C13 0.0955 (3) 0.71211 (9) 0.48597 (13) 0.0312 (4)
H13A 0.1376 0.6791 0.4351 0.047*
H13B −0.0190 0.7439 0.4572 0.047*
H13C 0.0315 0.6878 0.5421 0.047*
C14 0.6408 (3) 0.63113 (8) 0.67666 (11) 0.0218 (3)
H14 0.7919 0.6552 0.6773 0.026*
C15 0.5947 (3) 0.59934 (8) 0.57445 (12) 0.0266 (3)
H15A 0.6037 0.6350 0.5226 0.032*
H15B 0.4381 0.5799 0.5702 0.032*
C16 0.7685 (3) 0.54320 (9) 0.55551 (13) 0.0298 (4)
H16A 0.7305 0.5217 0.4901 0.036*
H16B 0.9232 0.5635 0.5530 0.036*
C17 0.7697 (3) 0.48904 (9) 0.63642 (14) 0.0337 (4)
H17A 0.8868 0.4541 0.6232 0.040*
H17B 0.6184 0.4663 0.6359 0.040*
C18 0.8223 (3) 0.52122 (9) 0.73821 (13) 0.0331 (4)
H18A 0.9786 0.5408 0.7403 0.040*
H18B 0.8175 0.4856 0.7904 0.040*
C19 0.6489 (3) 0.57741 (9) 0.75944 (12) 0.0294 (4)
H19A 0.4950 0.5569 0.7647 0.035*
H19B 0.6920 0.5995 0.8239 0.035*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0245 (2) 0.0235 (2) 0.0274 (2) 0.00162 (15) 0.00739 (15) 0.00115 (15)
O1 0.0266 (6) 0.0291 (6) 0.0277 (6) 0.0003 (5) −0.0021 (5) 0.0036 (5)
O2A 0.0207 (7) 0.0343 (8) 0.0425 (8) −0.0019 (5) 0.0062 (5) 0.0037 (6)
O2B 0.030 (8) 0.022 (8) 0.045 (7) 0.003 (6) 0.003 (6) 0.014 (6)
C1 0.0208 (7) 0.0193 (7) 0.0251 (7) 0.0015 (6) 0.0029 (6) −0.0013 (6)
C2 0.0225 (7) 0.0188 (7) 0.0259 (7) 0.0019 (6) 0.0042 (6) −0.0017 (6)
C3 0.0224 (8) 0.0200 (7) 0.0297 (8) 0.0003 (6) 0.0039 (6) −0.0065 (6)
C4 0.0264 (8) 0.0275 (8) 0.0287 (8) −0.0014 (7) 0.0018 (6) −0.0066 (6)
C5 0.0320 (9) 0.0392 (10) 0.0331 (9) 0.0013 (8) −0.0027 (7) −0.0119 (8)
C6 0.0266 (9) 0.0409 (11) 0.0504 (11) −0.0073 (8) −0.0003 (8) −0.0200 (9)
C7 0.0291 (9) 0.0293 (9) 0.0510 (11) −0.0079 (7) 0.0080 (8) −0.0116 (8)
C8 0.0272 (8) 0.0211 (8) 0.0384 (9) −0.0012 (7) 0.0078 (7) −0.0060 (7)
C9 0.0369 (10) 0.0245 (9) 0.0434 (10) −0.0058 (7) 0.0112 (8) 0.0024 (7)
C10 0.0381 (10) 0.0280 (9) 0.0356 (9) 0.0004 (7) 0.0058 (8) 0.0076 (7)
C11 0.0245 (8) 0.0242 (8) 0.0297 (8) 0.0014 (6) 0.0018 (6) −0.0004 (6)
C12 0.0235 (8) 0.0229 (8) 0.0274 (8) 0.0024 (6) 0.0033 (6) −0.0010 (6)
C13 0.0258 (8) 0.0359 (10) 0.0315 (9) −0.0028 (7) −0.0015 (7) −0.0034 (7)
C14 0.0192 (7) 0.0203 (7) 0.0260 (7) 0.0001 (6) 0.0020 (6) −0.0012 (6)
C15 0.0295 (8) 0.0243 (8) 0.0260 (8) 0.0041 (7) −0.0007 (6) −0.0015 (6)
C16 0.0317 (9) 0.0251 (8) 0.0327 (9) 0.0044 (7) 0.0023 (7) −0.0043 (7)
C17 0.0328 (9) 0.0227 (8) 0.0454 (10) 0.0048 (7) 0.0009 (8) 0.0005 (7)
C18 0.0338 (9) 0.0292 (9) 0.0362 (9) 0.0051 (7) −0.0013 (7) 0.0074 (7)
C19 0.0314 (9) 0.0289 (9) 0.0279 (8) 0.0019 (7) 0.0023 (7) 0.0034 (7)

Geometric parameters (Å, °)

S1—O2B 1.4741 (16) C10—C11 1.397 (2)
S1—O2A 1.4752 (13) C10—H10 0.9500
S1—C1 1.7796 (16) C12—C13 1.483 (2)
S1—C14 1.8287 (15) C13—H13A 0.9800
O1—C11 1.372 (2) C13—H13B 0.9800
O1—C12 1.3782 (19) C13—H13C 0.9800
C1—C12 1.356 (2) C14—C15 1.520 (2)
C1—C2 1.448 (2) C14—C19 1.530 (2)
C2—C11 1.377 (2) C14—H14 1.0000
C2—C3 1.431 (2) C15—C16 1.526 (2)
C3—C4 1.408 (2) C15—H15A 0.9900
C3—C8 1.431 (2) C15—H15B 0.9900
C4—C5 1.374 (2) C16—C17 1.519 (2)
C4—H4 0.9500 C16—H16A 0.9900
C5—C6 1.400 (3) C16—H16B 0.9900
C5—H5 0.9500 C17—C18 1.524 (3)
C6—C7 1.360 (3) C17—H17A 0.9900
C6—H6 0.9500 C17—H17B 0.9900
C7—C8 1.416 (2) C18—C19 1.532 (2)
C7—H7 0.9500 C18—H18A 0.9900
C8—C9 1.424 (3) C18—H18B 0.9900
C9—C10 1.363 (3) C19—H19A 0.9900
C9—H9 0.9500 C19—H19B 0.9900
O2B—S1—O2A 105.2 (6) C12—C13—H13A 109.5
O2B—S1—C1 119.1 (6) C12—C13—H13B 109.5
O2A—S1—C1 109.24 (8) H13A—C13—H13B 109.5
O2B—S1—C14 117.8 (6) C12—C13—H13C 109.5
O2A—S1—C14 106.57 (7) H13A—C13—H13C 109.5
C1—S1—C14 98.29 (7) H13B—C13—H13C 109.5
C11—O1—C12 106.44 (12) C15—C14—C19 111.88 (13)
C12—C1—C2 107.20 (14) C15—C14—S1 111.98 (11)
C12—C1—S1 125.51 (12) C19—C14—S1 106.89 (10)
C2—C1—S1 127.28 (12) C15—C14—H14 108.7
C11—C2—C3 119.04 (14) C19—C14—H14 108.7
C11—C2—C1 104.89 (14) S1—C14—H14 108.7
C3—C2—C1 136.07 (15) C14—C15—C16 110.75 (13)
C4—C3—C2 124.48 (15) C14—C15—H15A 109.5
C4—C3—C8 118.85 (15) C16—C15—H15A 109.5
C2—C3—C8 116.67 (15) C14—C15—H15B 109.5
C5—C4—C3 120.71 (16) C16—C15—H15B 109.5
C5—C4—H4 119.6 H15A—C15—H15B 108.1
C3—C4—H4 119.6 C17—C16—C15 111.43 (14)
C4—C5—C6 120.46 (18) C17—C16—H16A 109.3
C4—C5—H5 119.8 C15—C16—H16A 109.3
C6—C5—H5 119.8 C17—C16—H16B 109.3
C7—C6—C5 120.37 (17) C15—C16—H16B 109.3
C7—C6—H6 119.8 H16A—C16—H16B 108.0
C5—C6—H6 119.8 C16—C17—C18 110.31 (14)
C6—C7—C8 121.19 (17) C16—C17—H17A 109.6
C6—C7—H7 119.4 C18—C17—H17A 109.6
C8—C7—H7 119.4 C16—C17—H17B 109.6
C7—C8—C9 121.08 (16) C18—C17—H17B 109.6
C7—C8—C3 118.42 (16) H17A—C17—H17B 108.1
C9—C8—C3 120.49 (16) C17—C18—C19 110.89 (14)
C10—C9—C8 122.26 (16) C17—C18—H18A 109.5
C10—C9—H9 118.9 C19—C18—H18A 109.5
C8—C9—H9 118.9 C17—C18—H18B 109.5
C9—C10—C11 116.30 (16) C19—C18—H18B 109.5
C9—C10—H10 121.9 H18A—C18—H18B 108.1
C11—C10—H10 121.9 C14—C19—C18 110.95 (13)
O1—C11—C2 111.06 (14) C14—C19—H19A 109.5
O1—C11—C10 123.70 (15) C18—C19—H19A 109.5
C2—C11—C10 125.22 (16) C14—C19—H19B 109.5
C1—C12—O1 110.39 (14) C18—C19—H19B 109.5
C1—C12—C13 135.26 (15) H19A—C19—H19B 108.0
O1—C12—C13 114.34 (14)
O2B—S1—C1—C12 −129.3 (7) C12—O1—C11—C2 −0.83 (17)
O2A—S1—C1—C12 −8.48 (16) C12—O1—C11—C10 177.79 (15)
C14—S1—C1—C12 102.38 (15) C3—C2—C11—O1 −179.51 (13)
O2B—S1—C1—C2 49.3 (7) C1—C2—C11—O1 1.20 (17)
O2A—S1—C1—C2 170.18 (13) C3—C2—C11—C10 1.9 (2)
C14—S1—C1—C2 −78.96 (14) C1—C2—C11—C10 −177.40 (16)
C12—C1—C2—C11 −1.11 (17) C9—C10—C11—O1 −179.38 (15)
S1—C1—C2—C11 −179.96 (12) C9—C10—C11—C2 −1.0 (3)
C12—C1—C2—C3 179.78 (17) C2—C1—C12—O1 0.64 (17)
S1—C1—C2—C3 0.9 (3) S1—C1—C12—O1 179.53 (10)
C11—C2—C3—C4 179.47 (15) C2—C1—C12—C13 179.33 (17)
C1—C2—C3—C4 −1.5 (3) S1—C1—C12—C13 −1.8 (3)
C11—C2—C3—C8 −1.3 (2) C11—O1—C12—C1 0.08 (17)
C1—C2—C3—C8 177.71 (16) C11—O1—C12—C13 −178.90 (13)
C2—C3—C4—C5 178.74 (15) O2B—S1—C14—C15 173.0 (7)
C8—C3—C4—C5 −0.5 (2) O2A—S1—C14—C15 55.20 (13)
C3—C4—C5—C6 0.3 (3) C1—S1—C14—C15 −57.80 (12)
C4—C5—C6—C7 −0.1 (3) O2B—S1—C14—C19 50.1 (7)
C5—C6—C7—C8 0.0 (3) O2A—S1—C14—C19 −67.66 (12)
C6—C7—C8—C9 −179.00 (17) C1—S1—C14—C19 179.35 (11)
C6—C7—C8—C3 −0.1 (3) C19—C14—C15—C16 −54.42 (18)
C4—C3—C8—C7 0.3 (2) S1—C14—C15—C16 −174.40 (11)
C2—C3—C8—C7 −178.92 (14) C14—C15—C16—C17 56.20 (18)
C4—C3—C8—C9 179.24 (15) C15—C16—C17—C18 −57.71 (19)
C2—C3—C8—C9 0.0 (2) C16—C17—C18—C19 57.25 (19)
C7—C8—C9—C10 179.84 (17) C15—C14—C19—C18 54.40 (18)
C3—C8—C9—C10 1.0 (3) S1—C14—C19—C18 177.31 (12)
C8—C9—C10—C11 −0.5 (3) C17—C18—C19—C14 −55.59 (19)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C13—H13B···O2Bi 0.98 2.12 2.848 (6) 130
C14—H14···O2Aii 1.00 2.38 3.2947 (19) 152

Symmetry codes: (i) x−1/2, −y+3/2, z−1/2; (ii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FL2340).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010981/fl2340sup1.cif

e-67-o1002-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010981/fl2340Isup2.hkl

e-67-o1002-Isup2.hkl (173KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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