Abstract
In the title compound, C8H5F4NO2, synthesized by esterification of 2,3,4,5-tetrafluoroanthranilic acid with methanol, an intramolecular amine N—H⋯Ocarbonyl hydrogen bond is present, while intermolecular N—H⋯O hydrogen bonds produce chains in the crystal, which extend along the b-axis direction.
Related literature
For general background to this compound and its synthesis, see: Cai et al. (1992 ▶); Liao et al. (2007 ▶); Xu et al. (2008 ▶); Li et al. (1999 ▶).
Experimental
Crystal data
C8H5F4NO2
M r = 223.0
Monoclinic,
a = 4.5246 (2) Å
b = 9.6484 (4) Å
c = 19.3133 (9) Å
β = 91.324 (4)°
V = 842.90 (6) Å3
Z = 4
Cu Kα radiation
μ = 1.66 mm−1
T = 295 K
0.62 × 0.22 × 0.17 mm
Data collection
Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.622, T max = 1.000
2513 measured reflections
1332 independent reflections
1185 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.049
wR(F 2) = 0.140
S = 1.03
1332 reflections
145 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.17 e Å−3
Δρmin = −0.20 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015182/zs2108sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015182/zs2108Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811015182/zs2108Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N12—H12A⋯O3i | 0.85 (3) | 2.19 (3) | 3.028 (2) | 171 (3) |
| N12—H12B⋯O3 | 0.88 (3) | 2.00 (3) | 2.662 (2) | 131 (2) |
Symmetry code: (i)
.
Acknowledgments
This work was supported by grants from the National High Technology Development Project (863 Project; Nos. 2006 A A09Z408 GDSFC 06025194, 2005 A30503001, and 2006Z3E4041) and the National Natural Science Fund (No. 20772048).
supplementary crystallographic information
Comment
The title compound C8H5F4NO2 (I) (Fig. 1) was prepared by the esterification of 2,3,4,5-tetrafluoroanthranilic acid with methanol (Cai et al., 1992), and is an intermediate product in the synthesis of a coupling reagent (Li et al., 1999; Liao et al., 2007; Xu et al., 2008). In (I), the bond lengths and angles are unexceptional. In the molecule, an intramolecular amine N—H···Ocarbonyl hydrogen bond is present while intermolecular N—H···O hydrogen bonds give one-dimensional chain structures which extend along the b cell direction.
Experimental
2,3,4,5-Tetrafluoroanthranilic acid (10 mmol) in 50 ml of methanol was cooled in an ice-water bath and 5 ml SOCl2 was added dropwise. After 15 min, the mixture was removed and allowed to stand at room temperature for 30 min, and then was refluxed for 8 h. The cooled mixture was washed with 5% Na2C03 (1 x 10 ml) and water (2 x 10 ml) and then dried and evaporated to leave 1.71 g (76%) of the title compound as colorless crystals. Crystals suitable for X-ray analysis grew over a period of a week when a solution in methanol was allowed to evaporate in air at room temperature.
Refinement
The H atoms of the methyl group were positioned geometrically and were included in the refinement in the riding-model approximation, with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C). The amine H atoms were located in a difference Fourier map and the coordinates and isotropic displacement parameters were refined.
Figures
Fig. 1.
The molecular structure of the title compound showing the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Crystal data
| C8H5F4NO2 | F(000) = 448 |
| Mr = 223.0 | Dx = 1.758 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.5418 Å |
| a = 4.5246 (2) Å | Cell parameters from 1857 reflections |
| b = 9.6484 (4) Å | θ = 4.6–63.3° |
| c = 19.3133 (9) Å | µ = 1.66 mm−1 |
| β = 91.324 (4)° | T = 295 K |
| V = 842.90 (6) Å3 | Prism, colourless |
| Z = 4 | 0.62 × 0.22 × 0.17 mm |
Data collection
| Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer | 1332 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 1185 reflections with I > 2σ(I) |
| mirror | Rint = 0.018 |
| Detector resolution: 16.0288 pixels mm-1 | θmax = 63.4°, θmin = 4.6° |
| ω scans | h = −5→4 |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −10→10 |
| Tmin = 0.622, Tmax = 1.000 | l = −22→21 |
| 2513 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0959P)2 + 0.1931P] where P = (Fo2 + 2Fc2)/3 |
| 1332 reflections | (Δ/σ)max = 0.001 |
| 145 parameters | Δρmax = 0.17 e Å−3 |
| 4 restraints | Δρmin = −0.20 e Å−3 |
Special details
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| F1 | −0.0308 (3) | 0.34475 (14) | 0.54384 (7) | 0.0577 (5) | |
| F2 | 0.3821 (3) | −0.06985 (13) | 0.70892 (7) | 0.0608 (5) | |
| F4 | −0.2509 (3) | 0.09206 (15) | 0.52989 (7) | 0.0614 (5) | |
| F7 | −0.0460 (3) | −0.11671 (14) | 0.61192 (8) | 0.0691 (6) | |
| O3 | 0.6161 (4) | 0.44489 (16) | 0.68851 (8) | 0.0594 (6) | |
| O5 | 0.3628 (4) | 0.50208 (16) | 0.59299 (9) | 0.0614 (6) | |
| N12 | 0.6013 (4) | 0.1837 (2) | 0.73274 (10) | 0.0507 (7) | |
| C6 | 0.3985 (4) | 0.1679 (2) | 0.68073 (10) | 0.0394 (6) | |
| C8 | 0.3010 (4) | 0.2775 (2) | 0.63623 (9) | 0.0380 (6) | |
| C9 | 0.0669 (5) | 0.0104 (2) | 0.61966 (11) | 0.0474 (7) | |
| C10 | 0.4398 (4) | 0.4146 (2) | 0.64304 (10) | 0.0408 (6) | |
| C11 | 0.0806 (4) | 0.2464 (2) | 0.58597 (9) | 0.0404 (6) | |
| C13 | 0.2801 (5) | 0.0359 (2) | 0.66907 (10) | 0.0434 (6) | |
| C14 | −0.0354 (5) | 0.1169 (2) | 0.57774 (11) | 0.0458 (6) | |
| C15 | 0.5115 (7) | 0.6350 (3) | 0.59424 (16) | 0.0759 (10) | |
| H12A | 0.661 (7) | 0.115 (3) | 0.7566 (16) | 0.075 (9)* | |
| H12B | 0.678 (6) | 0.267 (3) | 0.7397 (14) | 0.070 (8)* | |
| H15A | 0.44700 | 0.68880 | 0.55490 | 0.1140* | |
| H15B | 0.72120 | 0.62090 | 0.59260 | 0.1140* | |
| H15C | 0.46470 | 0.68340 | 0.63600 | 0.1140* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| F1 | 0.0617 (8) | 0.0530 (8) | 0.0572 (8) | −0.0006 (6) | −0.0233 (6) | 0.0059 (6) |
| F2 | 0.0727 (9) | 0.0404 (7) | 0.0690 (9) | 0.0027 (6) | −0.0032 (7) | 0.0116 (6) |
| F4 | 0.0540 (8) | 0.0700 (9) | 0.0594 (8) | −0.0116 (6) | −0.0146 (6) | −0.0162 (6) |
| F7 | 0.0748 (10) | 0.0441 (8) | 0.0882 (11) | −0.0209 (6) | −0.0010 (8) | −0.0080 (7) |
| O3 | 0.0744 (11) | 0.0454 (9) | 0.0571 (10) | −0.0116 (7) | −0.0273 (8) | 0.0005 (7) |
| O5 | 0.0716 (11) | 0.0408 (9) | 0.0704 (10) | −0.0096 (7) | −0.0279 (8) | 0.0127 (7) |
| N12 | 0.0606 (12) | 0.0402 (11) | 0.0505 (11) | 0.0041 (9) | −0.0178 (9) | 0.0033 (8) |
| C6 | 0.0413 (10) | 0.0378 (10) | 0.0392 (10) | 0.0040 (8) | 0.0008 (8) | −0.0016 (8) |
| C8 | 0.0397 (10) | 0.0356 (10) | 0.0385 (10) | 0.0021 (8) | −0.0039 (8) | −0.0026 (8) |
| C9 | 0.0493 (12) | 0.0379 (11) | 0.0553 (12) | −0.0065 (9) | 0.0079 (10) | −0.0071 (9) |
| C10 | 0.0433 (11) | 0.0354 (10) | 0.0433 (11) | 0.0041 (8) | −0.0049 (8) | −0.0013 (8) |
| C11 | 0.0414 (10) | 0.0402 (11) | 0.0395 (10) | 0.0040 (8) | −0.0039 (8) | −0.0015 (8) |
| C13 | 0.0487 (11) | 0.0341 (10) | 0.0476 (11) | 0.0025 (8) | 0.0036 (9) | 0.0022 (8) |
| C14 | 0.0409 (10) | 0.0520 (12) | 0.0442 (11) | −0.0050 (9) | −0.0038 (8) | −0.0104 (9) |
| C15 | 0.095 (2) | 0.0390 (13) | 0.092 (2) | −0.0168 (13) | −0.0328 (16) | 0.0158 (12) |
Geometric parameters (Å, °)
| F1—C11 | 1.341 (2) | C6—C13 | 1.398 (3) |
| F2—C13 | 1.353 (2) | C6—C8 | 1.426 (3) |
| F4—C14 | 1.349 (3) | C8—C11 | 1.408 (3) |
| F7—C9 | 1.336 (2) | C8—C10 | 1.469 (3) |
| O3—C10 | 1.209 (3) | C9—C13 | 1.364 (3) |
| O5—C10 | 1.324 (3) | C9—C14 | 1.381 (3) |
| O5—C15 | 1.448 (3) | C11—C14 | 1.363 (3) |
| N12—C6 | 1.353 (3) | C15—H15A | 0.9600 |
| N12—H12A | 0.85 (3) | C15—H15B | 0.9600 |
| N12—H12B | 0.88 (3) | C15—H15C | 0.9600 |
| C10—O5—C15 | 115.98 (19) | F1—C11—C8 | 121.20 (17) |
| C6—N12—H12B | 118.2 (18) | F1—C11—C14 | 116.08 (17) |
| H12A—N12—H12B | 121 (3) | C8—C11—C14 | 122.72 (18) |
| C6—N12—H12A | 121 (2) | C6—C13—C9 | 122.65 (18) |
| C8—C6—C13 | 117.80 (17) | F2—C13—C6 | 118.11 (18) |
| N12—C6—C8 | 123.97 (18) | F2—C13—C9 | 119.25 (17) |
| N12—C6—C13 | 118.22 (18) | F4—C14—C9 | 119.76 (18) |
| C6—C8—C10 | 119.22 (16) | F4—C14—C11 | 120.86 (18) |
| C6—C8—C11 | 117.50 (17) | C9—C14—C11 | 119.4 (2) |
| C10—C8—C11 | 123.25 (17) | O5—C15—H15A | 109.00 |
| C13—C9—C14 | 119.87 (19) | O5—C15—H15B | 109.00 |
| F7—C9—C13 | 120.44 (18) | O5—C15—H15C | 109.00 |
| F7—C9—C14 | 119.69 (19) | H15A—C15—H15B | 109.00 |
| O3—C10—C8 | 123.81 (18) | H15A—C15—H15C | 109.00 |
| O3—C10—O5 | 122.31 (18) | H15B—C15—H15C | 110.00 |
| O5—C10—C8 | 113.83 (16) | ||
| C15—O5—C10—O3 | 2.4 (3) | C6—C8—C11—C14 | −1.4 (3) |
| C15—O5—C10—C8 | −175.26 (19) | C10—C8—C11—F1 | −4.7 (3) |
| N12—C6—C8—C10 | 4.4 (3) | C10—C8—C11—C14 | 176.41 (19) |
| N12—C6—C8—C11 | −177.73 (18) | F7—C9—C13—F2 | 1.8 (3) |
| C13—C6—C8—C10 | −174.65 (17) | F7—C9—C13—C6 | −177.89 (19) |
| C13—C6—C8—C11 | 3.3 (3) | C14—C9—C13—F2 | −178.81 (19) |
| N12—C6—C13—F2 | −2.2 (3) | C14—C9—C13—C6 | 1.5 (3) |
| N12—C6—C13—C9 | 177.5 (2) | F7—C9—C14—F4 | 0.8 (3) |
| C8—C6—C13—F2 | 176.87 (17) | F7—C9—C14—C11 | 179.94 (19) |
| C8—C6—C13—C9 | −3.4 (3) | C13—C9—C14—F4 | −178.57 (19) |
| C6—C8—C10—O3 | −6.8 (3) | C13—C9—C14—C11 | 0.6 (3) |
| C6—C8—C10—O5 | 170.78 (17) | F1—C11—C14—F4 | −0.4 (3) |
| C11—C8—C10—O3 | 175.38 (19) | F1—C11—C14—C9 | −179.53 (18) |
| C11—C8—C10—O5 | −7.0 (3) | C8—C11—C14—F4 | 178.59 (18) |
| C6—C8—C11—F1 | 177.52 (16) | C8—C11—C14—C9 | −0.6 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N12—H12A···O3i | 0.85 (3) | 2.19 (3) | 3.028 (2) | 171 (3) |
| N12—H12B···O3 | 0.88 (3) | 2.00 (3) | 2.662 (2) | 131 (2) |
| N12—H12A···F2 | 0.85 (3) | 2.36 (3) | 2.676 (2) | 103 (2) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2108).
References
- Cai, S.-X., Denis, J. G. & John, F. W. K. (1992). J. Org. Chem. 57, 1299–1304.
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Li, H.-T., Jiang, X.-H., Ye, Y.-H., Fan, C.-X., Todd, R. & Goodman, M. (1999). Org. Lett. 1, 91. [DOI] [PubMed]
- Liao, X.-J., Xu, W.-J., Xu, S.-H. & Dong, F.-F. (2007). Acta Cryst. E63, o3313.
- Oxford Diffraction (2010). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Xu, W.-J., Liao, X.-J., Xu, S.-H., Diao, J.-Z., Du, B., Zhou, X.-L. & Pan, S.-S. (2008). Org. Lett. 10, 4569–4572. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015182/zs2108sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015182/zs2108Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811015182/zs2108Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

