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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 25;67(Pt 6):o1511. doi: 10.1107/S1600536811015182

Methyl 2-amino-3,4,5,6-tetra­fluoro­benzoate

Wei Guo a, Xiao-Jian Liao a, Guo-Qiang Li a, Shi-Hai Xu a,*
PMCID: PMC3120311  PMID: 21754876

Abstract

In the title compound, C8H5F4NO2, synthesized by esterification of 2,3,4,5-tetra­fluoro­anthranilic acid with methanol, an intra­molecular amine N—H⋯Ocarbon­yl hydrogen bond is present, while inter­molecular N—H⋯O hydrogen bonds produce chains in the crystal, which extend along the b-axis direction.

Related literature

For general background to this compound and its synthesis, see: Cai et al. (1992); Liao et al. (2007); Xu et al. (2008); Li et al. (1999).graphic file with name e-67-o1511-scheme1.jpg

Experimental

Crystal data

  • C8H5F4NO2

  • M r = 223.0

  • Monoclinic, Inline graphic

  • a = 4.5246 (2) Å

  • b = 9.6484 (4) Å

  • c = 19.3133 (9) Å

  • β = 91.324 (4)°

  • V = 842.90 (6) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 1.66 mm−1

  • T = 295 K

  • 0.62 × 0.22 × 0.17 mm

Data collection

  • Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) T min = 0.622, T max = 1.000

  • 2513 measured reflections

  • 1332 independent reflections

  • 1185 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.049

  • wR(F 2) = 0.140

  • S = 1.03

  • 1332 reflections

  • 145 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015182/zs2108sup1.cif

e-67-o1511-sup1.cif (15.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015182/zs2108Isup2.hkl

e-67-o1511-Isup2.hkl (64.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811015182/zs2108Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N12—H12A⋯O3i 0.85 (3) 2.19 (3) 3.028 (2) 171 (3)
N12—H12B⋯O3 0.88 (3) 2.00 (3) 2.662 (2) 131 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by grants from the National High Technology Development Project (863 Project; Nos. 2006 A A09Z408 GDSFC 06025194, 2005 A30503001, and 2006Z3E4041) and the National Natural Science Fund (No. 20772048).

supplementary crystallographic information

Comment

The title compound C8H5F4NO2 (I) (Fig. 1) was prepared by the esterification of 2,3,4,5-tetrafluoroanthranilic acid with methanol (Cai et al., 1992), and is an intermediate product in the synthesis of a coupling reagent (Li et al., 1999; Liao et al., 2007; Xu et al., 2008). In (I), the bond lengths and angles are unexceptional. In the molecule, an intramolecular amine N—H···Ocarbonyl hydrogen bond is present while intermolecular N—H···O hydrogen bonds give one-dimensional chain structures which extend along the b cell direction.

Experimental

2,3,4,5-Tetrafluoroanthranilic acid (10 mmol) in 50 ml of methanol was cooled in an ice-water bath and 5 ml SOCl2 was added dropwise. After 15 min, the mixture was removed and allowed to stand at room temperature for 30 min, and then was refluxed for 8 h. The cooled mixture was washed with 5% Na2C03 (1 x 10 ml) and water (2 x 10 ml) and then dried and evaporated to leave 1.71 g (76%) of the title compound as colorless crystals. Crystals suitable for X-ray analysis grew over a period of a week when a solution in methanol was allowed to evaporate in air at room temperature.

Refinement

The H atoms of the methyl group were positioned geometrically and were included in the refinement in the riding-model approximation, with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C). The amine H atoms were located in a difference Fourier map and the coordinates and isotropic displacement parameters were refined.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C8H5F4NO2 F(000) = 448
Mr = 223.0 Dx = 1.758 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.5418 Å
a = 4.5246 (2) Å Cell parameters from 1857 reflections
b = 9.6484 (4) Å θ = 4.6–63.3°
c = 19.3133 (9) Å µ = 1.66 mm1
β = 91.324 (4)° T = 295 K
V = 842.90 (6) Å3 Prism, colourless
Z = 4 0.62 × 0.22 × 0.17 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer 1332 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source 1185 reflections with I > 2σ(I)
mirror Rint = 0.018
Detector resolution: 16.0288 pixels mm-1 θmax = 63.4°, θmin = 4.6°
ω scans h = −5→4
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) k = −10→10
Tmin = 0.622, Tmax = 1.000 l = −22→21
2513 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0959P)2 + 0.1931P] where P = (Fo2 + 2Fc2)/3
1332 reflections (Δ/σ)max = 0.001
145 parameters Δρmax = 0.17 e Å3
4 restraints Δρmin = −0.20 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 −0.0308 (3) 0.34475 (14) 0.54384 (7) 0.0577 (5)
F2 0.3821 (3) −0.06985 (13) 0.70892 (7) 0.0608 (5)
F4 −0.2509 (3) 0.09206 (15) 0.52989 (7) 0.0614 (5)
F7 −0.0460 (3) −0.11671 (14) 0.61192 (8) 0.0691 (6)
O3 0.6161 (4) 0.44489 (16) 0.68851 (8) 0.0594 (6)
O5 0.3628 (4) 0.50208 (16) 0.59299 (9) 0.0614 (6)
N12 0.6013 (4) 0.1837 (2) 0.73274 (10) 0.0507 (7)
C6 0.3985 (4) 0.1679 (2) 0.68073 (10) 0.0394 (6)
C8 0.3010 (4) 0.2775 (2) 0.63623 (9) 0.0380 (6)
C9 0.0669 (5) 0.0104 (2) 0.61966 (11) 0.0474 (7)
C10 0.4398 (4) 0.4146 (2) 0.64304 (10) 0.0408 (6)
C11 0.0806 (4) 0.2464 (2) 0.58597 (9) 0.0404 (6)
C13 0.2801 (5) 0.0359 (2) 0.66907 (10) 0.0434 (6)
C14 −0.0354 (5) 0.1169 (2) 0.57774 (11) 0.0458 (6)
C15 0.5115 (7) 0.6350 (3) 0.59424 (16) 0.0759 (10)
H12A 0.661 (7) 0.115 (3) 0.7566 (16) 0.075 (9)*
H12B 0.678 (6) 0.267 (3) 0.7397 (14) 0.070 (8)*
H15A 0.44700 0.68880 0.55490 0.1140*
H15B 0.72120 0.62090 0.59260 0.1140*
H15C 0.46470 0.68340 0.63600 0.1140*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0617 (8) 0.0530 (8) 0.0572 (8) −0.0006 (6) −0.0233 (6) 0.0059 (6)
F2 0.0727 (9) 0.0404 (7) 0.0690 (9) 0.0027 (6) −0.0032 (7) 0.0116 (6)
F4 0.0540 (8) 0.0700 (9) 0.0594 (8) −0.0116 (6) −0.0146 (6) −0.0162 (6)
F7 0.0748 (10) 0.0441 (8) 0.0882 (11) −0.0209 (6) −0.0010 (8) −0.0080 (7)
O3 0.0744 (11) 0.0454 (9) 0.0571 (10) −0.0116 (7) −0.0273 (8) 0.0005 (7)
O5 0.0716 (11) 0.0408 (9) 0.0704 (10) −0.0096 (7) −0.0279 (8) 0.0127 (7)
N12 0.0606 (12) 0.0402 (11) 0.0505 (11) 0.0041 (9) −0.0178 (9) 0.0033 (8)
C6 0.0413 (10) 0.0378 (10) 0.0392 (10) 0.0040 (8) 0.0008 (8) −0.0016 (8)
C8 0.0397 (10) 0.0356 (10) 0.0385 (10) 0.0021 (8) −0.0039 (8) −0.0026 (8)
C9 0.0493 (12) 0.0379 (11) 0.0553 (12) −0.0065 (9) 0.0079 (10) −0.0071 (9)
C10 0.0433 (11) 0.0354 (10) 0.0433 (11) 0.0041 (8) −0.0049 (8) −0.0013 (8)
C11 0.0414 (10) 0.0402 (11) 0.0395 (10) 0.0040 (8) −0.0039 (8) −0.0015 (8)
C13 0.0487 (11) 0.0341 (10) 0.0476 (11) 0.0025 (8) 0.0036 (9) 0.0022 (8)
C14 0.0409 (10) 0.0520 (12) 0.0442 (11) −0.0050 (9) −0.0038 (8) −0.0104 (9)
C15 0.095 (2) 0.0390 (13) 0.092 (2) −0.0168 (13) −0.0328 (16) 0.0158 (12)

Geometric parameters (Å, °)

F1—C11 1.341 (2) C6—C13 1.398 (3)
F2—C13 1.353 (2) C6—C8 1.426 (3)
F4—C14 1.349 (3) C8—C11 1.408 (3)
F7—C9 1.336 (2) C8—C10 1.469 (3)
O3—C10 1.209 (3) C9—C13 1.364 (3)
O5—C10 1.324 (3) C9—C14 1.381 (3)
O5—C15 1.448 (3) C11—C14 1.363 (3)
N12—C6 1.353 (3) C15—H15A 0.9600
N12—H12A 0.85 (3) C15—H15B 0.9600
N12—H12B 0.88 (3) C15—H15C 0.9600
C10—O5—C15 115.98 (19) F1—C11—C8 121.20 (17)
C6—N12—H12B 118.2 (18) F1—C11—C14 116.08 (17)
H12A—N12—H12B 121 (3) C8—C11—C14 122.72 (18)
C6—N12—H12A 121 (2) C6—C13—C9 122.65 (18)
C8—C6—C13 117.80 (17) F2—C13—C6 118.11 (18)
N12—C6—C8 123.97 (18) F2—C13—C9 119.25 (17)
N12—C6—C13 118.22 (18) F4—C14—C9 119.76 (18)
C6—C8—C10 119.22 (16) F4—C14—C11 120.86 (18)
C6—C8—C11 117.50 (17) C9—C14—C11 119.4 (2)
C10—C8—C11 123.25 (17) O5—C15—H15A 109.00
C13—C9—C14 119.87 (19) O5—C15—H15B 109.00
F7—C9—C13 120.44 (18) O5—C15—H15C 109.00
F7—C9—C14 119.69 (19) H15A—C15—H15B 109.00
O3—C10—C8 123.81 (18) H15A—C15—H15C 109.00
O3—C10—O5 122.31 (18) H15B—C15—H15C 110.00
O5—C10—C8 113.83 (16)
C15—O5—C10—O3 2.4 (3) C6—C8—C11—C14 −1.4 (3)
C15—O5—C10—C8 −175.26 (19) C10—C8—C11—F1 −4.7 (3)
N12—C6—C8—C10 4.4 (3) C10—C8—C11—C14 176.41 (19)
N12—C6—C8—C11 −177.73 (18) F7—C9—C13—F2 1.8 (3)
C13—C6—C8—C10 −174.65 (17) F7—C9—C13—C6 −177.89 (19)
C13—C6—C8—C11 3.3 (3) C14—C9—C13—F2 −178.81 (19)
N12—C6—C13—F2 −2.2 (3) C14—C9—C13—C6 1.5 (3)
N12—C6—C13—C9 177.5 (2) F7—C9—C14—F4 0.8 (3)
C8—C6—C13—F2 176.87 (17) F7—C9—C14—C11 179.94 (19)
C8—C6—C13—C9 −3.4 (3) C13—C9—C14—F4 −178.57 (19)
C6—C8—C10—O3 −6.8 (3) C13—C9—C14—C11 0.6 (3)
C6—C8—C10—O5 170.78 (17) F1—C11—C14—F4 −0.4 (3)
C11—C8—C10—O3 175.38 (19) F1—C11—C14—C9 −179.53 (18)
C11—C8—C10—O5 −7.0 (3) C8—C11—C14—F4 178.59 (18)
C6—C8—C11—F1 177.52 (16) C8—C11—C14—C9 −0.6 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N12—H12A···O3i 0.85 (3) 2.19 (3) 3.028 (2) 171 (3)
N12—H12B···O3 0.88 (3) 2.00 (3) 2.662 (2) 131 (2)
N12—H12A···F2 0.85 (3) 2.36 (3) 2.676 (2) 103 (2)

Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2108).

References

  1. Cai, S.-X., Denis, J. G. & John, F. W. K. (1992). J. Org. Chem. 57, 1299–1304.
  2. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
  3. Li, H.-T., Jiang, X.-H., Ye, Y.-H., Fan, C.-X., Todd, R. & Goodman, M. (1999). Org. Lett. 1, 91. [DOI] [PubMed]
  4. Liao, X.-J., Xu, W.-J., Xu, S.-H. & Dong, F.-F. (2007). Acta Cryst. E63, o3313.
  5. Oxford Diffraction (2010). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Xu, W.-J., Liao, X.-J., Xu, S.-H., Diao, J.-Z., Du, B., Zhou, X.-L. & Pan, S.-S. (2008). Org. Lett. 10, 4569–4572. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015182/zs2108sup1.cif

e-67-o1511-sup1.cif (15.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015182/zs2108Isup2.hkl

e-67-o1511-Isup2.hkl (64.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811015182/zs2108Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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