Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 28;67(Pt 6):m803. doi: 10.1107/S1600536811019507

Diaqua­bis­[5-(2-pyridyl­meth­yl)tetra­zol­ato-κ2 N 1,N 5]zinc(II)

Yang Liu a, Ya-Ling Li a, Xiu-Guang Wang a, En-Cui Yang a,*
PMCID: PMC3120314  PMID: 21754679

Abstract

In the title mononuclear complex, [Zn(C7H6N5)2(H2O)2], the ZnII atom, located on an inversion centre, is in a distorted octa­hedral coordination geometry formed by four N atoms from two chelating 5-(2-pyridyl­meth­yl)tetra­zolate ligands and two O donors from two water mol­ecules. Inter­molecular O—H⋯N hydrogen bonds between the coordinated water mol­ecule and the tetra­zolyl group of the 5-(2-pyridyl­meth­yl)tetra­zolate ligand lead to the formation of a three-dimensional network.

Related literature

For metal-organic frameworks with tetra­zolate ligands and their applications in magnetism, fluorescence and gas storage, see: Yang et al. (2011); Feng et al. (2010); Zhao et al. (2008); Panda et al. (2011). For metal complexes with in situ-generated 5-(2-pyridyl­meth­yl)-tetra­zolate ligands, see: Xu et al. (2009); Wang (2008).graphic file with name e-67-0m803-scheme1.jpg

Experimental

Crystal data

  • [Zn(C7H6N5)2(H2O)2]

  • M r = 421.74

  • Monoclinic, Inline graphic

  • a = 6.6695 (4) Å

  • b = 13.8949 (8) Å

  • c = 10.8718 (5) Å

  • β = 127.055 (2)°

  • V = 804.05 (8) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.57 mm−1

  • T = 173 K

  • 0.20 × 0.10 × 0.08 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.745, T max = 0.885

  • 3929 measured reflections

  • 1388 independent reflections

  • 1335 reflections with I > 2σ(I)

  • R int = 0.030

Refinement

  • R[F 2 > 2σ(F 2)] = 0.022

  • wR(F 2) = 0.053

  • S = 1.05

  • 1388 reflections

  • 124 parameters

  • H-atom parameters constrained

  • Δρmax = 0.62 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2003); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg & Berndt, 1999); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019507/bt5553sup1.cif

e-67-0m803-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019507/bt5553Isup2.hkl

e-67-0m803-Isup2.hkl (68.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N4i 0.85 2.00 2.8395 (19) 171
O1—H1B⋯N2ii 0.85 2.16 2.9386 (18) 152

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors gratefully acknowledge financial support from Tianjin Normal University.

supplementary crystallographic information

Comment

Design and construction of metal-organic frameworks (MOFs) with in situ generated tetrazolate ligands are of great interest due to their intriguing structures and topology (Zhao et al., 2008), promising applications in magnetism (Yang et al. 2011), luminscence (Feng et al. 2010), and gas storage (Panda et al. 2011) as well as the effectiveness, simplicity, and environmental friendliness of the in situ synthetic route. Up to date, lots of tetrazolyl-based MOFs have been reported with special interest on the tuning of the organic nitrile and metal ions (Xu et al. 2009; Wang et al., 2008). Herein, as our continuing investigations on the coordination chemistry of the tetrazolyl ligand, we report the crystal structure of a diaquazinc(II) complex with an in situ generated 5-(2-pyridylmethyl)-tetrazolate ligand.

The molecular structure of the title mononuclear complex is show Figure 1. The ZnII ion in the mononuclear structure of I, locating on an inversion center, exhibits a slightly distorted octahedral geometry involoving four N donors from two in situ generated 5-(pyridin-2-ylmethyl)tetrazolate ligands, and two O atoms from a pair of coordinated water molecules. The flexible 5-(pyridin-2-ylmethyl)tetrazolate anion acts as a bidentate chelating ligand to coordinate with ZnII through pyridyl and tetrazolyl N donors.

In the crystal structure, intermolecular O—H···N hydrogen bonds between the coordinated water molecules and the tetrazolyl group of 5-(2-pyridylmethyl)- tetrazolate ligand (Table 2) lead to the formation of a three-dimensional network (Figure 2).

Experimental

A mixture containing 2-(pyridin-2-yl)acetonitrile (26 mg, 0.2 mmol), Zn(NO3)2 (29.7 mg, 0.1 mmol), 1,3,5-benzenetricarboxylic acid (21.0 mg, 0.1 mmol), NaN3 (13.0 mg, 0.2 mmol), and doubly deionized water (10.0 ml) was sealed in a Teflon-lined reactor (23.0 ml) and heated at 125 °C for 72 h. After the mixture was cooled to room temperature at a rate of 5.5°C/h, pale-yellow block-shaped crystals suitable for X-ray diffraction analysis were obtained. Yield: 56% based on ZnII salt. Anal. Calcd.for C14H16N10O2Zn: C, 39.87; H, 3.82; N, 33.21%. Found: C, 39.85; H, 3.82; N, 33.24%.

Refinement

H atoms were located in a difference map but refined using a riding model with O-H = 0.85Å, Caromatic-H = 0.95Å, Cmethylene-H = 0.99Å and with U(H) set to 1.2 U of the parent atom.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title complex with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level [Symmetry code: (A) 1 – x, 2 – y, – z].

Fig. 2.

Fig. 2.

Three-dimensional network of the title complex assembled from hydrogen-bonding interactions.

Crystal data

[Zn(C7H6N5)2(H2O)2] F(000) = 432
Mr = 421.74 Dx = 1.742 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 6.6695 (4) Å Cell parameters from 3869 reflections
b = 13.8949 (8) Å θ = 2.8–28.4°
c = 10.8718 (5) Å µ = 1.57 mm1
β = 127.055 (2)° T = 173 K
V = 804.05 (8) Å3 Block, pale yellow
Z = 2 0.20 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer 1388 independent reflections
Radiation source: fine-focus sealed tube 1335 reflections with I > 2σ(I)
graphite Rint = 0.030
φ and ω scans θmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −7→7
Tmin = 0.745, Tmax = 0.885 k = −16→11
3929 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.053 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0146P)2 + 0.7405P] where P = (Fo2 + 2Fc2)/3
1388 reflections (Δ/σ)max < 0.001
124 parameters Δρmax = 0.62 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Zn1 0.5000 1.0000 0.0000 0.01318 (11)
O1 0.6481 (2) 0.90283 (9) −0.08811 (14) 0.0196 (3)
H1A 0.5809 0.8510 −0.1382 0.024*
H1B 0.7995 0.9131 −0.0532 0.024*
N1 0.4006 (3) 0.88555 (10) 0.07937 (16) 0.0144 (3)
N2 0.1830 (3) 0.86762 (11) 0.05983 (17) 0.0164 (3)
N3 0.2217 (3) 0.79864 (11) 0.15370 (17) 0.0185 (3)
N4 0.4661 (3) 0.77039 (11) 0.23846 (16) 0.0161 (3)
N5 0.8595 (3) 0.99858 (9) 0.22729 (17) 0.0135 (3)
C1 0.5681 (3) 0.82608 (12) 0.18945 (19) 0.0140 (4)
C2 0.8406 (3) 0.82446 (13) 0.2548 (2) 0.0166 (4)
H2A 0.8553 0.8047 0.1730 0.020*
H2B 0.9289 0.7759 0.3381 0.020*
C3 0.9670 (3) 0.92064 (13) 0.3181 (2) 0.0146 (4)
C4 0.9710 (3) 1.08445 (13) 0.2853 (2) 0.0159 (4)
H4 0.8952 1.1398 0.2218 0.019*
C5 1.1913 (3) 1.09628 (14) 0.4334 (2) 0.0189 (4)
H5 1.2641 1.1582 0.4704 0.023*
C6 1.3018 (3) 1.01590 (14) 0.5256 (2) 0.0196 (4)
H6 1.4524 1.0216 0.6276 0.023*
C7 1.1908 (3) 0.92742 (14) 0.4676 (2) 0.0175 (4)
H7 1.2659 0.8712 0.5289 0.021*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Zn1 0.01153 (16) 0.01131 (17) 0.01161 (16) −0.00133 (10) 0.00427 (13) 0.00173 (10)
O1 0.0142 (6) 0.0174 (7) 0.0229 (6) −0.0019 (5) 0.0089 (5) −0.0076 (6)
N1 0.0128 (7) 0.0135 (7) 0.0140 (7) −0.0012 (6) 0.0066 (6) 0.0001 (6)
N2 0.0138 (7) 0.0160 (8) 0.0174 (7) −0.0018 (6) 0.0083 (6) −0.0003 (7)
N3 0.0160 (7) 0.0183 (8) 0.0189 (7) −0.0012 (6) 0.0093 (6) 0.0004 (7)
N4 0.0150 (7) 0.0145 (7) 0.0169 (7) −0.0003 (6) 0.0086 (6) 0.0018 (6)
N5 0.0127 (7) 0.0136 (8) 0.0141 (7) 0.0005 (5) 0.0080 (6) 0.0011 (5)
C1 0.0160 (8) 0.0104 (8) 0.0143 (8) −0.0005 (7) 0.0085 (7) −0.0020 (7)
C2 0.0153 (8) 0.0139 (9) 0.0189 (9) 0.0028 (7) 0.0094 (7) 0.0029 (8)
C3 0.0141 (8) 0.0176 (9) 0.0164 (8) 0.0020 (7) 0.0115 (7) 0.0019 (8)
C4 0.0166 (8) 0.0159 (9) 0.0146 (8) −0.0015 (7) 0.0092 (7) 0.0008 (8)
C5 0.0180 (9) 0.0212 (10) 0.0169 (9) −0.0049 (8) 0.0102 (8) −0.0038 (8)
C6 0.0127 (8) 0.0298 (10) 0.0151 (9) 0.0001 (8) 0.0078 (7) −0.0005 (8)
C7 0.0145 (8) 0.0214 (10) 0.0172 (9) 0.0051 (7) 0.0100 (7) 0.0058 (8)

Geometric parameters (Å, °)

Zn1—N1i 2.0983 (14) N5—C3 1.345 (2)
Zn1—N1 2.0984 (14) C1—C2 1.501 (2)
Zn1—N5 2.1714 (15) C2—C3 1.507 (2)
Zn1—N5i 2.1714 (15) C2—H2A 0.9900
Zn1—O1 2.2039 (12) C2—H2B 0.9900
Zn1—O1i 2.2039 (12) C3—C7 1.399 (2)
O1—H1A 0.8501 C4—C5 1.388 (2)
O1—H1B 0.8500 C4—H4 0.9500
N1—C1 1.324 (2) C5—C6 1.380 (3)
N1—N2 1.3572 (19) C5—H5 0.9500
N2—N3 1.307 (2) C6—C7 1.376 (3)
N3—N4 1.360 (2) C6—H6 0.9500
N4—C1 1.335 (2) C7—H7 0.9500
N5—C4 1.345 (2)
N1i—Zn1—N1 180.00 (7) C3—N5—Zn1 125.26 (11)
N1i—Zn1—N5 93.96 (5) N1—C1—N4 111.52 (15)
N1—Zn1—N5 86.04 (5) N1—C1—C2 123.99 (15)
N1i—Zn1—N5i 86.04 (5) N4—C1—C2 124.45 (15)
N1—Zn1—N5i 93.96 (5) C1—C2—C3 112.78 (14)
N5—Zn1—N5i 180.0 C1—C2—H2A 109.0
N1i—Zn1—O1 87.13 (5) C3—C2—H2A 109.0
N1—Zn1—O1 92.87 (5) C1—C2—H2B 109.0
N5—Zn1—O1 90.71 (5) C3—C2—H2B 109.0
N5i—Zn1—O1 89.29 (5) H2A—C2—H2B 107.8
N1i—Zn1—O1i 92.87 (5) N5—C3—C7 121.50 (16)
N1—Zn1—O1i 87.13 (5) N5—C3—C2 118.36 (15)
N5—Zn1—O1i 89.29 (5) C7—C3—C2 120.14 (16)
N5i—Zn1—O1i 90.71 (5) N5—C4—C5 123.28 (17)
O1—Zn1—O1i 180.00 (6) N5—C4—H4 118.4
Zn1—O1—H1A 126.6 C5—C4—H4 118.4
Zn1—O1—H1B 115.2 C6—C5—C4 118.38 (17)
H1A—O1—H1B 117.0 C6—C5—H5 120.8
C1—N1—N2 105.52 (13) C4—C5—H5 120.8
C1—N1—Zn1 122.75 (11) C7—C6—C5 119.06 (17)
N2—N1—Zn1 130.38 (11) C7—C6—H6 120.5
N3—N2—N1 108.81 (13) C5—C6—H6 120.5
N2—N3—N4 109.47 (13) C6—C7—C3 119.69 (17)
C1—N4—N3 104.66 (14) C6—C7—H7 120.2
C4—N5—C3 118.08 (15) C3—C7—H7 120.2
C4—N5—Zn1 116.42 (11)
N1i—Zn1—N1—C1 −100 (10) O1i—Zn1—N5—C3 116.31 (13)
N5—Zn1—N1—C1 −26.79 (13) N2—N1—C1—N4 1.07 (19)
N5i—Zn1—N1—C1 153.21 (13) Zn1—N1—C1—N4 169.09 (11)
O1—Zn1—N1—C1 63.72 (13) N2—N1—C1—C2 −176.72 (15)
O1i—Zn1—N1—C1 −116.28 (13) Zn1—N1—C1—C2 −8.7 (2)
N1i—Zn1—N1—N2 65 (10) N3—N4—C1—N1 −0.63 (19)
N5—Zn1—N1—N2 137.97 (14) N3—N4—C1—C2 177.15 (15)
N5i—Zn1—N1—N2 −42.03 (14) N1—C1—C2—C3 56.5 (2)
O1—Zn1—N1—N2 −131.52 (14) N4—C1—C2—C3 −121.02 (18)
O1i—Zn1—N1—N2 48.48 (14) C4—N5—C3—C7 −1.2 (2)
C1—N1—N2—N3 −1.10 (18) Zn1—N5—C3—C7 −175.34 (12)
Zn1—N1—N2—N3 −167.85 (11) C4—N5—C3—C2 178.95 (15)
N1—N2—N3—N4 0.75 (18) Zn1—N5—C3—C2 4.8 (2)
N2—N3—N4—C1 −0.09 (18) C1—C2—C3—N5 −51.8 (2)
N1i—Zn1—N5—C4 34.93 (13) C1—C2—C3—C7 128.33 (16)
N1—Zn1—N5—C4 −145.07 (13) C3—N5—C4—C5 0.3 (2)
N5i—Zn1—N5—C4 85.1 (7) Zn1—N5—C4—C5 174.98 (13)
O1—Zn1—N5—C4 122.11 (12) N5—C4—C5—C6 0.2 (3)
O1i—Zn1—N5—C4 −57.89 (12) C4—C5—C6—C7 0.2 (3)
N1i—Zn1—N5—C3 −150.86 (13) C5—C6—C7—C3 −1.0 (3)
N1—Zn1—N5—C3 29.14 (13) N5—C3—C7—C6 1.6 (2)
N5i—Zn1—N5—C3 −100.7 (7) C2—C3—C7—C6 −178.58 (16)
O1—Zn1—N5—C3 −63.69 (13)

Symmetry codes: (i) −x+1, −y+2, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N4ii 0.85 2.00 2.8395 (19) 171
O1—H1B···N2iii 0.85 2.16 2.9386 (18) 152

Symmetry codes: (ii) x, −y+3/2, z−1/2; (iii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5553).

References

  1. Brandenburg, K. & Berndt, M. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2001). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2003). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Feng, Y., Yang, E.-C., Fu, M. & Zhao, X.-J. (2010). Z. Anorg. Allg. Chem. 636, 253–257.
  5. Panda, T., Pachfule, P., Chen, Y., Jiang, J. & Banerjee, R. (2011). Chem. Commun. 47, 2011–2013. [DOI] [PubMed]
  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Wang, W. (2008). Acta Cryst. E64, m999. [DOI] [PMC free article] [PubMed]
  9. Xu, G.-H., Tian, H., Pan, K.-J. & Ye, Q. (2009). J. Coord. Chem. 62, 2457–2464.
  10. Yang, E.-C., Feng, Y., Liu, Z.-Y. & Zhao, X.-J. (2011). CrystEngComm, 13, 230–242.
  11. Zhao, H., Qu, Z.-R., Ye, H.-Y. & Xiong, R.-G. (2008). Chem. Soc. Rev. 37, 84–100. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019507/bt5553sup1.cif

e-67-0m803-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019507/bt5553Isup2.hkl

e-67-0m803-Isup2.hkl (68.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES