Abstract
In the title mononuclear complex, [Zn(C7H6N5)2(H2O)2], the ZnII atom, located on an inversion centre, is in a distorted octahedral coordination geometry formed by four N atoms from two chelating 5-(2-pyridylmethyl)tetrazolate ligands and two O donors from two water molecules. Intermolecular O—H⋯N hydrogen bonds between the coordinated water molecule and the tetrazolyl group of the 5-(2-pyridylmethyl)tetrazolate ligand lead to the formation of a three-dimensional network.
Related literature
For metal-organic frameworks with tetrazolate ligands and their applications in magnetism, fluorescence and gas storage, see: Yang et al. (2011 ▶); Feng et al. (2010 ▶); Zhao et al. (2008 ▶); Panda et al. (2011 ▶). For metal complexes with in situ-generated 5-(2-pyridylmethyl)-tetrazolate ligands, see: Xu et al. (2009 ▶); Wang (2008 ▶).
Experimental
Crystal data
[Zn(C7H6N5)2(H2O)2]
M r = 421.74
Monoclinic,
a = 6.6695 (4) Å
b = 13.8949 (8) Å
c = 10.8718 (5) Å
β = 127.055 (2)°
V = 804.05 (8) Å3
Z = 2
Mo Kα radiation
μ = 1.57 mm−1
T = 173 K
0.20 × 0.10 × 0.08 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.745, T max = 0.885
3929 measured reflections
1388 independent reflections
1335 reflections with I > 2σ(I)
R int = 0.030
Refinement
R[F 2 > 2σ(F 2)] = 0.022
wR(F 2) = 0.053
S = 1.05
1388 reflections
124 parameters
H-atom parameters constrained
Δρmax = 0.62 e Å−3
Δρmin = −0.30 e Å−3
Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019507/bt5553sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019507/bt5553Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1A⋯N4i | 0.85 | 2.00 | 2.8395 (19) | 171 |
| O1—H1B⋯N2ii | 0.85 | 2.16 | 2.9386 (18) | 152 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors gratefully acknowledge financial support from Tianjin Normal University.
supplementary crystallographic information
Comment
Design and construction of metal-organic frameworks (MOFs) with in situ generated tetrazolate ligands are of great interest due to their intriguing structures and topology (Zhao et al., 2008), promising applications in magnetism (Yang et al. 2011), luminscence (Feng et al. 2010), and gas storage (Panda et al. 2011) as well as the effectiveness, simplicity, and environmental friendliness of the in situ synthetic route. Up to date, lots of tetrazolyl-based MOFs have been reported with special interest on the tuning of the organic nitrile and metal ions (Xu et al. 2009; Wang et al., 2008). Herein, as our continuing investigations on the coordination chemistry of the tetrazolyl ligand, we report the crystal structure of a diaquazinc(II) complex with an in situ generated 5-(2-pyridylmethyl)-tetrazolate ligand.
The molecular structure of the title mononuclear complex is show Figure 1. The ZnII ion in the mononuclear structure of I, locating on an inversion center, exhibits a slightly distorted octahedral geometry involoving four N donors from two in situ generated 5-(pyridin-2-ylmethyl)tetrazolate ligands, and two O atoms from a pair of coordinated water molecules. The flexible 5-(pyridin-2-ylmethyl)tetrazolate anion acts as a bidentate chelating ligand to coordinate with ZnII through pyridyl and tetrazolyl N donors.
In the crystal structure, intermolecular O—H···N hydrogen bonds between the coordinated water molecules and the tetrazolyl group of 5-(2-pyridylmethyl)- tetrazolate ligand (Table 2) lead to the formation of a three-dimensional network (Figure 2).
Experimental
A mixture containing 2-(pyridin-2-yl)acetonitrile (26 mg, 0.2 mmol), Zn(NO3)2 (29.7 mg, 0.1 mmol), 1,3,5-benzenetricarboxylic acid (21.0 mg, 0.1 mmol), NaN3 (13.0 mg, 0.2 mmol), and doubly deionized water (10.0 ml) was sealed in a Teflon-lined reactor (23.0 ml) and heated at 125 °C for 72 h. After the mixture was cooled to room temperature at a rate of 5.5°C/h, pale-yellow block-shaped crystals suitable for X-ray diffraction analysis were obtained. Yield: 56% based on ZnII salt. Anal. Calcd.for C14H16N10O2Zn: C, 39.87; H, 3.82; N, 33.21%. Found: C, 39.85; H, 3.82; N, 33.24%.
Refinement
H atoms were located in a difference map but refined using a riding model with O-H = 0.85Å, Caromatic-H = 0.95Å, Cmethylene-H = 0.99Å and with U(H) set to 1.2 U of the parent atom.
Figures
Fig. 1.
The molecular structure of the title complex with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level [Symmetry code: (A) 1 – x, 2 – y, – z].
Fig. 2.
Three-dimensional network of the title complex assembled from hydrogen-bonding interactions.
Crystal data
| [Zn(C7H6N5)2(H2O)2] | F(000) = 432 |
| Mr = 421.74 | Dx = 1.742 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 6.6695 (4) Å | Cell parameters from 3869 reflections |
| b = 13.8949 (8) Å | θ = 2.8–28.4° |
| c = 10.8718 (5) Å | µ = 1.57 mm−1 |
| β = 127.055 (2)° | T = 173 K |
| V = 804.05 (8) Å3 | Block, pale yellow |
| Z = 2 | 0.20 × 0.10 × 0.08 mm |
Data collection
| Bruker APEXII CCD diffractometer | 1388 independent reflections |
| Radiation source: fine-focus sealed tube | 1335 reflections with I > 2σ(I) |
| graphite | Rint = 0.030 |
| φ and ω scans | θmax = 25.0°, θmin = 2.8° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→7 |
| Tmin = 0.745, Tmax = 0.885 | k = −16→11 |
| 3929 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.053 | H-atom parameters constrained |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0146P)2 + 0.7405P] where P = (Fo2 + 2Fc2)/3 |
| 1388 reflections | (Δ/σ)max < 0.001 |
| 124 parameters | Δρmax = 0.62 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 0.5000 | 1.0000 | 0.0000 | 0.01318 (11) | |
| O1 | 0.6481 (2) | 0.90283 (9) | −0.08811 (14) | 0.0196 (3) | |
| H1A | 0.5809 | 0.8510 | −0.1382 | 0.024* | |
| H1B | 0.7995 | 0.9131 | −0.0532 | 0.024* | |
| N1 | 0.4006 (3) | 0.88555 (10) | 0.07937 (16) | 0.0144 (3) | |
| N2 | 0.1830 (3) | 0.86762 (11) | 0.05983 (17) | 0.0164 (3) | |
| N3 | 0.2217 (3) | 0.79864 (11) | 0.15370 (17) | 0.0185 (3) | |
| N4 | 0.4661 (3) | 0.77039 (11) | 0.23846 (16) | 0.0161 (3) | |
| N5 | 0.8595 (3) | 0.99858 (9) | 0.22729 (17) | 0.0135 (3) | |
| C1 | 0.5681 (3) | 0.82608 (12) | 0.18945 (19) | 0.0140 (4) | |
| C2 | 0.8406 (3) | 0.82446 (13) | 0.2548 (2) | 0.0166 (4) | |
| H2A | 0.8553 | 0.8047 | 0.1730 | 0.020* | |
| H2B | 0.9289 | 0.7759 | 0.3381 | 0.020* | |
| C3 | 0.9670 (3) | 0.92064 (13) | 0.3181 (2) | 0.0146 (4) | |
| C4 | 0.9710 (3) | 1.08445 (13) | 0.2853 (2) | 0.0159 (4) | |
| H4 | 0.8952 | 1.1398 | 0.2218 | 0.019* | |
| C5 | 1.1913 (3) | 1.09628 (14) | 0.4334 (2) | 0.0189 (4) | |
| H5 | 1.2641 | 1.1582 | 0.4704 | 0.023* | |
| C6 | 1.3018 (3) | 1.01590 (14) | 0.5256 (2) | 0.0196 (4) | |
| H6 | 1.4524 | 1.0216 | 0.6276 | 0.023* | |
| C7 | 1.1908 (3) | 0.92742 (14) | 0.4676 (2) | 0.0175 (4) | |
| H7 | 1.2659 | 0.8712 | 0.5289 | 0.021* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.01153 (16) | 0.01131 (17) | 0.01161 (16) | −0.00133 (10) | 0.00427 (13) | 0.00173 (10) |
| O1 | 0.0142 (6) | 0.0174 (7) | 0.0229 (6) | −0.0019 (5) | 0.0089 (5) | −0.0076 (6) |
| N1 | 0.0128 (7) | 0.0135 (7) | 0.0140 (7) | −0.0012 (6) | 0.0066 (6) | 0.0001 (6) |
| N2 | 0.0138 (7) | 0.0160 (8) | 0.0174 (7) | −0.0018 (6) | 0.0083 (6) | −0.0003 (7) |
| N3 | 0.0160 (7) | 0.0183 (8) | 0.0189 (7) | −0.0012 (6) | 0.0093 (6) | 0.0004 (7) |
| N4 | 0.0150 (7) | 0.0145 (7) | 0.0169 (7) | −0.0003 (6) | 0.0086 (6) | 0.0018 (6) |
| N5 | 0.0127 (7) | 0.0136 (8) | 0.0141 (7) | 0.0005 (5) | 0.0080 (6) | 0.0011 (5) |
| C1 | 0.0160 (8) | 0.0104 (8) | 0.0143 (8) | −0.0005 (7) | 0.0085 (7) | −0.0020 (7) |
| C2 | 0.0153 (8) | 0.0139 (9) | 0.0189 (9) | 0.0028 (7) | 0.0094 (7) | 0.0029 (8) |
| C3 | 0.0141 (8) | 0.0176 (9) | 0.0164 (8) | 0.0020 (7) | 0.0115 (7) | 0.0019 (8) |
| C4 | 0.0166 (8) | 0.0159 (9) | 0.0146 (8) | −0.0015 (7) | 0.0092 (7) | 0.0008 (8) |
| C5 | 0.0180 (9) | 0.0212 (10) | 0.0169 (9) | −0.0049 (8) | 0.0102 (8) | −0.0038 (8) |
| C6 | 0.0127 (8) | 0.0298 (10) | 0.0151 (9) | 0.0001 (8) | 0.0078 (7) | −0.0005 (8) |
| C7 | 0.0145 (8) | 0.0214 (10) | 0.0172 (9) | 0.0051 (7) | 0.0100 (7) | 0.0058 (8) |
Geometric parameters (Å, °)
| Zn1—N1i | 2.0983 (14) | N5—C3 | 1.345 (2) |
| Zn1—N1 | 2.0984 (14) | C1—C2 | 1.501 (2) |
| Zn1—N5 | 2.1714 (15) | C2—C3 | 1.507 (2) |
| Zn1—N5i | 2.1714 (15) | C2—H2A | 0.9900 |
| Zn1—O1 | 2.2039 (12) | C2—H2B | 0.9900 |
| Zn1—O1i | 2.2039 (12) | C3—C7 | 1.399 (2) |
| O1—H1A | 0.8501 | C4—C5 | 1.388 (2) |
| O1—H1B | 0.8500 | C4—H4 | 0.9500 |
| N1—C1 | 1.324 (2) | C5—C6 | 1.380 (3) |
| N1—N2 | 1.3572 (19) | C5—H5 | 0.9500 |
| N2—N3 | 1.307 (2) | C6—C7 | 1.376 (3) |
| N3—N4 | 1.360 (2) | C6—H6 | 0.9500 |
| N4—C1 | 1.335 (2) | C7—H7 | 0.9500 |
| N5—C4 | 1.345 (2) | ||
| N1i—Zn1—N1 | 180.00 (7) | C3—N5—Zn1 | 125.26 (11) |
| N1i—Zn1—N5 | 93.96 (5) | N1—C1—N4 | 111.52 (15) |
| N1—Zn1—N5 | 86.04 (5) | N1—C1—C2 | 123.99 (15) |
| N1i—Zn1—N5i | 86.04 (5) | N4—C1—C2 | 124.45 (15) |
| N1—Zn1—N5i | 93.96 (5) | C1—C2—C3 | 112.78 (14) |
| N5—Zn1—N5i | 180.0 | C1—C2—H2A | 109.0 |
| N1i—Zn1—O1 | 87.13 (5) | C3—C2—H2A | 109.0 |
| N1—Zn1—O1 | 92.87 (5) | C1—C2—H2B | 109.0 |
| N5—Zn1—O1 | 90.71 (5) | C3—C2—H2B | 109.0 |
| N5i—Zn1—O1 | 89.29 (5) | H2A—C2—H2B | 107.8 |
| N1i—Zn1—O1i | 92.87 (5) | N5—C3—C7 | 121.50 (16) |
| N1—Zn1—O1i | 87.13 (5) | N5—C3—C2 | 118.36 (15) |
| N5—Zn1—O1i | 89.29 (5) | C7—C3—C2 | 120.14 (16) |
| N5i—Zn1—O1i | 90.71 (5) | N5—C4—C5 | 123.28 (17) |
| O1—Zn1—O1i | 180.00 (6) | N5—C4—H4 | 118.4 |
| Zn1—O1—H1A | 126.6 | C5—C4—H4 | 118.4 |
| Zn1—O1—H1B | 115.2 | C6—C5—C4 | 118.38 (17) |
| H1A—O1—H1B | 117.0 | C6—C5—H5 | 120.8 |
| C1—N1—N2 | 105.52 (13) | C4—C5—H5 | 120.8 |
| C1—N1—Zn1 | 122.75 (11) | C7—C6—C5 | 119.06 (17) |
| N2—N1—Zn1 | 130.38 (11) | C7—C6—H6 | 120.5 |
| N3—N2—N1 | 108.81 (13) | C5—C6—H6 | 120.5 |
| N2—N3—N4 | 109.47 (13) | C6—C7—C3 | 119.69 (17) |
| C1—N4—N3 | 104.66 (14) | C6—C7—H7 | 120.2 |
| C4—N5—C3 | 118.08 (15) | C3—C7—H7 | 120.2 |
| C4—N5—Zn1 | 116.42 (11) | ||
| N1i—Zn1—N1—C1 | −100 (10) | O1i—Zn1—N5—C3 | 116.31 (13) |
| N5—Zn1—N1—C1 | −26.79 (13) | N2—N1—C1—N4 | 1.07 (19) |
| N5i—Zn1—N1—C1 | 153.21 (13) | Zn1—N1—C1—N4 | 169.09 (11) |
| O1—Zn1—N1—C1 | 63.72 (13) | N2—N1—C1—C2 | −176.72 (15) |
| O1i—Zn1—N1—C1 | −116.28 (13) | Zn1—N1—C1—C2 | −8.7 (2) |
| N1i—Zn1—N1—N2 | 65 (10) | N3—N4—C1—N1 | −0.63 (19) |
| N5—Zn1—N1—N2 | 137.97 (14) | N3—N4—C1—C2 | 177.15 (15) |
| N5i—Zn1—N1—N2 | −42.03 (14) | N1—C1—C2—C3 | 56.5 (2) |
| O1—Zn1—N1—N2 | −131.52 (14) | N4—C1—C2—C3 | −121.02 (18) |
| O1i—Zn1—N1—N2 | 48.48 (14) | C4—N5—C3—C7 | −1.2 (2) |
| C1—N1—N2—N3 | −1.10 (18) | Zn1—N5—C3—C7 | −175.34 (12) |
| Zn1—N1—N2—N3 | −167.85 (11) | C4—N5—C3—C2 | 178.95 (15) |
| N1—N2—N3—N4 | 0.75 (18) | Zn1—N5—C3—C2 | 4.8 (2) |
| N2—N3—N4—C1 | −0.09 (18) | C1—C2—C3—N5 | −51.8 (2) |
| N1i—Zn1—N5—C4 | 34.93 (13) | C1—C2—C3—C7 | 128.33 (16) |
| N1—Zn1—N5—C4 | −145.07 (13) | C3—N5—C4—C5 | 0.3 (2) |
| N5i—Zn1—N5—C4 | 85.1 (7) | Zn1—N5—C4—C5 | 174.98 (13) |
| O1—Zn1—N5—C4 | 122.11 (12) | N5—C4—C5—C6 | 0.2 (3) |
| O1i—Zn1—N5—C4 | −57.89 (12) | C4—C5—C6—C7 | 0.2 (3) |
| N1i—Zn1—N5—C3 | −150.86 (13) | C5—C6—C7—C3 | −1.0 (3) |
| N1—Zn1—N5—C3 | 29.14 (13) | N5—C3—C7—C6 | 1.6 (2) |
| N5i—Zn1—N5—C3 | −100.7 (7) | C2—C3—C7—C6 | −178.58 (16) |
| O1—Zn1—N5—C3 | −63.69 (13) |
Symmetry codes: (i) −x+1, −y+2, −z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1A···N4ii | 0.85 | 2.00 | 2.8395 (19) | 171 |
| O1—H1B···N2iii | 0.85 | 2.16 | 2.9386 (18) | 152 |
Symmetry codes: (ii) x, −y+3/2, z−1/2; (iii) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5553).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019507/bt5553sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019507/bt5553Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


