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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 20;67(Pt 6):m775. doi: 10.1107/S1600536811018411

[μ-1,2-Bis(4-pyrid­yl)ethene-κ2 N:N′]bis­[aqua­(pyridine-2,6-dicarboxyl­ato-κ3 O 2,N,O 6)copper(II)] dihydrate

Shie Fu Lush a,*
PMCID: PMC3120317  PMID: 21754658

Abstract

In the title dinuclear CuII complex, [Cu2(C7H3NO4)2(C12H10N2)(H2O)2]·2H2O, the water-coordinated CuII cation is O,N,O′-chelated by a pyridine-2,6-dicarboxyl­ate (pdc) dianion, and one pyridine N atom from a 1,2-bis­(4-pyrid­yl)ethene ligand coordinates to the CuII cation, completing the CuN2O3 distorted square-pyriamidial geometry. The Cu—Owater bond [2.388 (4) Å] in the axial direction is much longer than the other Cu—O bonds. The 1,2-bis­(4-pyrid­yl)ethene ligand is located across an inversion center with the mid-point of the C=C bond at the inversion center, and bridges two CuII cations, generating a centrosymmetric dinuclear complex. The crystal structure is stabilized by classical O—H⋯O and weak C—H⋯O hydrogen bonds.

Related literature

For related CuII complexes with pyridine-2,6-dicarboxyl­ate ligands, see: Chaigneau et al. (2004); Dong et al. (2010); Ghosh et al. (2004).graphic file with name e-67-0m775-scheme1.jpg

Experimental

Crystal data

  • [Cu2(C7H3NO4)2(C12H10N2)(H2O)2]·2H2O

  • M r = 711.59

  • Triclinic, Inline graphic

  • a = 5.2616 (5) Å

  • b = 7.9316 (7) Å

  • c = 16.8063 (14) Å

  • α = 89.183 (2)°

  • β = 84.541 (2)°

  • γ = 72.557 (2)°

  • V = 666.01 (10) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 1.67 mm−1

  • T = 295 K

  • 0.25 × 0.10 × 0.10 mm

Data collection

  • Bruker SMART 1000 CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.921, T max = 0.976

  • 5755 measured reflections

  • 2373 independent reflections

  • 2174 reflections with I > 2σ(I)

  • R int = 0.036

Refinement

  • R[F 2 > 2σ(F 2)] = 0.054

  • wR(F 2) = 0.126

  • S = 1.23

  • 2373 reflections

  • 200 parameters

  • H-atom parameters constrained

  • Δρmax = 0.57 e Å−3

  • Δρmin = −0.60 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018411/xu5212sup1.cif

e-67-0m775-sup1.cif (18.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018411/xu5212Isup2.hkl

e-67-0m775-Isup2.hkl (116.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Cu1—O1 2.388 (4)
Cu1—O2 2.053 (3)
Cu1—O4 2.003 (4)
Cu1—N1 1.902 (3)
Cu1—N2 1.951 (4)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯O6 0.82 2.10 2.669 (8) 126
O1—H1B⋯O2i 0.82 1.99 2.809 (5) 175
O6—H6A⋯O3i 0.82 2.31 2.919 (9) 132
O6—H6B⋯O3ii 0.82 2.06 2.851 (8) 163
C2—H2A⋯O1iii 0.93 2.54 3.348 (6) 146
C4—H4A⋯O3iv 0.93 2.52 3.411 (6) 160
C8—H8A⋯O1v 0.93 2.49 3.381 (6) 161
C9—H9A⋯O5vi 0.93 2.47 3.382 (6) 167
C13—H13A⋯O5vii 0.93 2.35 3.265 (6) 166

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic; (vii) Inline graphic.

Acknowledgments

This work was supported financially by Yuanpei University, Taiwan.

supplementary crystallographic information

Comment

The pyridine-2,6-dicarboxylic acid (pdcH2) has important coordination functions to transition metals by either carboxylate bridges between metal centers, to form dimeric complexes or tridentate (O, N, O') chelation to one metal ion. Some CuII pdc complexes have been reported (Chaigneau et al., 2004; Ghosh et al., 2004; Dong et al., 2010).

In the title compound, [Cu2(C12H10N2)(C7H3NO4)2(H2O)2].2(H2O)], the CuII atom is coordinated by two oxygen atoms and one nitrogen atom of one pyridine-2,6-dicarboxylate (pdc) ligand, one pyrinyl N atom of the 1,2-bis(4-pyridyl)ethene ligand. The distorted square-pyriamidial geometry is completed by a longer axial bond to the O atom of a water molecule [Cu—O 2.390 (43) Å in the axial direction]. The Cu1—N2—N2i—Cu1i torsion angle is 180.0 (13)°, assemblies exhibiting M—anti-1,2-bis(4-pyridyl)ethene—M bridges. Two CuII atoms are bridged by one trans-1,2-bis(4-pyridyl)ethene ligand, generating a dinuclear molecule.The dinuclear molecule is located on a centre of inversion, which is in the middle of the ethylyne fragment of the bpe ligand.

The molecular structure and packing are stabilized by strong O—H···O and weak C—H···O hydrogen bonds, also including a crystal water molecule.

Experimental

A solution of Cu(NO3)2.6H2O (0.296 g, 1 mmol) in 5 ml H2O was added to pyridine-2,6-dicarboxylic acid (0.167, 1 mmol) and 1,2-bis(4-pyridyl)ethane (0.184 g, 1 mmol) in a Teflon-lined stainless steel autoclave which was heated under autogenous pressure to 453 K for 72 h and then allowed to cool to room temperature. Blue columnar crystals of the title compound were collected in 42.35% yield (based on Cu).

Refinement

Water H atoms were placed in calculated positions and refined with the distance constrains of O—H = 0.82, and Uiso(H)= 1.5Ueq(O). Other H atoms were positioned geometrically with C—H = 0.93 Å, and refined using a riding model with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

View of the title compound with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level.[symmetry code: (i) 1 - x, -y, 1 - z].

Fig. 2.

Fig. 2.

The molecular packing for the title compound. Hydrogen bonds are shown as dashed lines.

Crystal data

[Cu2(C7H3NO4)2(C12H10N2)(H2O)2]·2H2O Z = 1
Mr = 711.59 F(000) = 362
Triclinic, P1 Dx = 1.774 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.2616 (5) Å Cell parameters from 3226 reflections
b = 7.9316 (7) Å θ = 2.5–25.0°
c = 16.8063 (14) Å µ = 1.67 mm1
α = 89.183 (2)° T = 295 K
β = 84.541 (2)° Columnar, blue
γ = 72.557 (2)° 0.25 × 0.10 × 0.10 mm
V = 666.01 (10) Å3

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 2373 independent reflections
Radiation source: fine-focus sealed tube 2174 reflections with I > 2σ(I)
graphite Rint = 0.036
Detector resolution: 9 pixels mm-1 θmax = 25.1°, θmin = 1.2°
φ and ω scans h = −6→6
Absorption correction: multi-scan (SADABS; Bruker, 2001) k = −8→9
Tmin = 0.921, Tmax = 0.976 l = −19→19
5755 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126 H-atom parameters constrained
S = 1.23 w = 1/[σ2(Fo2) + (0.0544P)2 + 0.7371P] where P = (Fo2 + 2Fc2)/3
2373 reflections (Δ/σ)max = 0.002
200 parameters Δρmax = 0.56 e Å3
0 restraints Δρmin = −0.60 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.57285 (11) 0.65304 (7) 0.73016 (3) 0.0351 (2)
O1 0.8836 (7) 0.4653 (5) 0.8122 (2) 0.0583 (14)
O2 0.2784 (6) 0.6365 (4) 0.81661 (17) 0.0396 (10)
O3 0.0696 (7) 0.7621 (5) 0.9326 (2) 0.0557 (12)
O4 0.8504 (7) 0.7395 (4) 0.66711 (17) 0.0435 (11)
O5 1.0829 (8) 0.9308 (5) 0.6771 (2) 0.0616 (16)
N1 0.5505 (7) 0.8520 (4) 0.7953 (2) 0.0316 (11)
N2 0.5692 (7) 0.4684 (5) 0.6552 (2) 0.0343 (11)
C1 0.7125 (9) 0.9487 (6) 0.7732 (2) 0.0355 (14)
C2 0.7019 (10) 1.0950 (6) 0.8175 (3) 0.0458 (17)
C3 0.5179 (11) 1.1389 (7) 0.8849 (3) 0.0520 (17)
C4 0.3530 (10) 1.0343 (7) 0.9072 (3) 0.0478 (17)
C5 0.3772 (9) 0.8890 (6) 0.8601 (3) 0.0363 (12)
C6 0.2256 (9) 0.7535 (6) 0.8725 (3) 0.0394 (14)
C7 0.8995 (10) 0.8702 (6) 0.6991 (3) 0.0406 (16)
C8 0.4106 (10) 0.3645 (6) 0.6710 (3) 0.0431 (16)
C9 0.4046 (10) 0.2307 (6) 0.6218 (3) 0.0409 (16)
C10 0.5697 (9) 0.1958 (6) 0.5501 (2) 0.0354 (14)
C11 0.7338 (10) 0.3030 (7) 0.5338 (3) 0.0453 (16)
C12 0.7297 (10) 0.4350 (6) 0.5863 (3) 0.0434 (16)
C13 0.5754 (10) 0.0543 (6) 0.4941 (3) 0.0486 (17)
O6 0.7321 (17) 0.5326 (10) 0.9675 (4) 0.149 (4)
H1A 0.89390 0.41550 0.85540 0.0880*
H1B 0.99980 0.51510 0.81040 0.0880*
H2A 0.81460 1.16320 0.80290 0.0550*
H3A 0.50510 1.23890 0.91520 0.0620*
H4A 0.23090 1.06180 0.95240 0.0570*
H8A 0.29840 0.38510 0.71840 0.0520*
H9A 0.29080 0.16300 0.63600 0.0490*
H11A 0.84750 0.28520 0.48670 0.0540*
H12A 0.84250 0.50410 0.57390 0.0520*
H13A 0.69100 0.03930 0.44750 0.066 (17)*
H6A 0.78230 0.61090 0.98600 0.2230*
H6B 0.81680 0.44330 0.98950 0.2230*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.0427 (3) 0.0384 (3) 0.0323 (3) −0.0274 (2) 0.0089 (2) −0.0139 (2)
O1 0.052 (2) 0.048 (2) 0.082 (3) −0.0273 (17) 0.0001 (18) −0.0071 (18)
O2 0.0426 (18) 0.0427 (17) 0.0397 (16) −0.0255 (14) 0.0094 (13) −0.0145 (13)
O3 0.058 (2) 0.063 (2) 0.050 (2) −0.0321 (18) 0.0239 (17) −0.0156 (17)
O4 0.056 (2) 0.0483 (19) 0.0359 (16) −0.0341 (16) 0.0111 (14) −0.0150 (14)
O5 0.075 (3) 0.075 (3) 0.054 (2) −0.059 (2) 0.0196 (18) −0.0117 (18)
N1 0.0359 (19) 0.0311 (18) 0.0327 (18) −0.0186 (16) 0.0019 (15) −0.0067 (14)
N2 0.042 (2) 0.0353 (19) 0.0320 (18) −0.0232 (17) 0.0040 (15) −0.0094 (15)
C1 0.044 (3) 0.033 (2) 0.036 (2) −0.022 (2) −0.0013 (19) −0.0021 (18)
C2 0.057 (3) 0.039 (3) 0.051 (3) −0.028 (2) −0.008 (2) −0.003 (2)
C3 0.065 (3) 0.040 (3) 0.056 (3) −0.025 (2) 0.002 (2) −0.019 (2)
C4 0.054 (3) 0.049 (3) 0.041 (3) −0.018 (2) 0.004 (2) −0.018 (2)
C5 0.039 (2) 0.037 (2) 0.037 (2) −0.0180 (19) −0.0002 (18) −0.0092 (18)
C6 0.038 (2) 0.044 (3) 0.041 (2) −0.022 (2) 0.0053 (19) −0.008 (2)
C7 0.052 (3) 0.045 (3) 0.034 (2) −0.031 (2) 0.004 (2) −0.0013 (19)
C8 0.050 (3) 0.047 (3) 0.037 (2) −0.026 (2) 0.012 (2) −0.015 (2)
C9 0.050 (3) 0.041 (3) 0.041 (2) −0.031 (2) 0.008 (2) −0.0117 (19)
C10 0.043 (3) 0.036 (2) 0.031 (2) −0.018 (2) −0.0008 (18) −0.0051 (18)
C11 0.053 (3) 0.051 (3) 0.038 (2) −0.030 (2) 0.015 (2) −0.015 (2)
C12 0.052 (3) 0.047 (3) 0.040 (2) −0.031 (2) 0.007 (2) −0.011 (2)
C13 0.063 (3) 0.049 (3) 0.041 (3) −0.033 (2) 0.015 (2) −0.020 (2)
O6 0.195 (7) 0.159 (7) 0.095 (4) −0.063 (6) 0.008 (5) −0.015 (4)

Geometric parameters (Å, °)

Cu1—O1 2.388 (4) C2—C3 1.394 (7)
Cu1—O2 2.053 (3) C3—C4 1.394 (8)
Cu1—O4 2.003 (4) C4—C5 1.375 (7)
Cu1—N1 1.902 (3) C5—C6 1.520 (7)
Cu1—N2 1.951 (4) C8—C9 1.364 (7)
O2—C6 1.281 (6) C9—C10 1.396 (6)
O3—C6 1.229 (6) C10—C11 1.390 (7)
O4—C7 1.278 (6) C10—C13 1.467 (6)
O5—C7 1.226 (7) C11—C12 1.373 (7)
O1—H1A 0.8200 C13—C13i 1.336 (7)
O1—H1B 0.8200 C2—H2A 0.9300
O6—H6A 0.8200 C3—H3A 0.9300
O6—H6B 0.8200 C4—H4A 0.9300
N1—C1 1.333 (6) C8—H8A 0.9300
N1—C5 1.328 (6) C9—H9A 0.9300
N2—C12 1.346 (6) C11—H11A 0.9300
N2—C8 1.345 (6) C12—H12A 0.9300
C1—C2 1.372 (6) C13—H13A 0.9300
C1—C7 1.526 (6)
O1—Cu1—O2 86.70 (12) O3—C6—C5 119.9 (4)
O1—Cu1—O4 94.17 (13) O2—C6—O3 125.8 (4)
O1—Cu1—N1 90.56 (14) O2—C6—C5 114.3 (4)
O1—Cu1—N2 96.13 (14) O4—C7—C1 114.4 (4)
O2—Cu1—O4 161.23 (12) O5—C7—C1 119.4 (4)
O2—Cu1—N1 79.81 (14) O4—C7—O5 126.1 (5)
O2—Cu1—N2 101.12 (14) N2—C8—C9 124.0 (5)
O4—Cu1—N1 81.43 (14) C8—C9—C10 119.8 (5)
O4—Cu1—N2 97.44 (14) C11—C10—C13 120.6 (4)
N1—Cu1—N2 173.29 (15) C9—C10—C11 116.3 (4)
Cu1—O2—C6 114.6 (3) C9—C10—C13 123.1 (4)
Cu1—O4—C7 114.6 (3) C10—C11—C12 120.7 (5)
H1A—O1—H1B 104.00 N2—C12—C11 122.7 (5)
Cu1—O1—H1B 101.00 C10—C13—C13i 124.0 (5)
Cu1—O1—H1A 143.00 C1—C2—H2A 121.00
H6A—O6—H6B 104.00 C3—C2—H2A 121.00
C1—N1—C5 122.9 (4) C4—C3—H3A 120.00
Cu1—N1—C5 119.5 (3) C2—C3—H3A 120.00
Cu1—N1—C1 117.7 (3) C3—C4—H4A 121.00
Cu1—N2—C12 122.0 (3) C5—C4—H4A 121.00
C8—N2—C12 116.6 (4) C9—C8—H8A 118.00
Cu1—N2—C8 121.4 (3) N2—C8—H8A 118.00
N1—C1—C2 120.0 (4) C8—C9—H9A 120.00
N1—C1—C7 111.5 (4) C10—C9—H9A 120.00
C2—C1—C7 128.5 (4) C12—C11—H11A 120.00
C1—C2—C3 118.3 (5) C10—C11—H11A 120.00
C2—C3—C4 120.5 (5) N2—C12—H12A 119.00
C3—C4—C5 117.7 (5) C11—C12—H12A 119.00
N1—C5—C4 120.6 (4) C10—C13—H13A 118.00
N1—C5—C6 111.7 (4) C13i—C13—H13A 118.00
C4—C5—C6 127.7 (5)
O1—Cu1—O2—C6 88.5 (3) C1—N1—C5—C6 −178.0 (4)
N1—Cu1—O2—C6 −2.7 (3) Cu1—N2—C8—C9 −178.3 (4)
N2—Cu1—O2—C6 −175.9 (3) C12—N2—C8—C9 −0.1 (7)
O1—Cu1—O4—C7 −85.2 (3) Cu1—N2—C12—C11 178.5 (4)
N1—Cu1—O4—C7 4.7 (3) C8—N2—C12—C11 0.3 (7)
N2—Cu1—O4—C7 178.1 (3) N1—C1—C2—C3 −0.4 (7)
O1—Cu1—N1—C1 93.5 (3) C7—C1—C2—C3 −178.0 (5)
O1—Cu1—N1—C5 −86.4 (3) N1—C1—C7—O4 6.8 (6)
O2—Cu1—N1—C1 −179.9 (3) N1—C1—C7—O5 −171.0 (4)
O2—Cu1—N1—C5 0.1 (3) C2—C1—C7—O4 −175.4 (5)
O4—Cu1—N1—C1 −0.6 (3) C2—C1—C7—O5 6.8 (8)
O4—Cu1—N1—C5 179.5 (4) C1—C2—C3—C4 1.2 (8)
O1—Cu1—N2—C8 84.0 (4) C2—C3—C4—C5 −0.7 (8)
O1—Cu1—N2—C12 −94.2 (4) C3—C4—C5—N1 −0.7 (7)
O2—Cu1—N2—C8 −3.9 (4) C3—C4—C5—C6 178.7 (5)
O2—Cu1—N2—C12 178.0 (4) N1—C5—C6—O2 −4.2 (6)
O4—Cu1—N2—C8 179.0 (4) N1—C5—C6—O3 175.4 (4)
O4—Cu1—N2—C12 0.9 (4) C4—C5—C6—O2 176.4 (5)
Cu1—O2—C6—O3 −175.2 (4) C4—C5—C6—O3 −4.0 (8)
Cu1—O2—C6—C5 4.3 (5) N2—C8—C9—C10 −0.2 (8)
Cu1—O4—C7—O5 170.2 (4) C8—C9—C10—C11 0.2 (7)
Cu1—O4—C7—C1 −7.4 (5) C8—C9—C10—C13 179.9 (5)
Cu1—N1—C1—C2 179.1 (3) C9—C10—C11—C12 0.0 (7)
Cu1—N1—C1—C7 −2.9 (5) C13—C10—C11—C12 −179.7 (5)
C5—N1—C1—C2 −0.9 (7) C9—C10—C13—C13i 0.0 (8)
C5—N1—C1—C7 177.1 (4) C11—C10—C13—C13i 179.7 (5)
Cu1—N1—C5—C4 −178.6 (4) C10—C11—C12—N2 −0.2 (8)
Cu1—N1—C5—C6 2.0 (5) C10—C13—C13i—C10i 180.0 (4)
C1—N1—C5—C4 1.5 (7)

Symmetry codes: (i) −x+1, −y, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1A···O6 0.82 2.10 2.669 (8) 126
O1—H1B···O2ii 0.82 1.99 2.809 (5) 175
O6—H6A···O3ii 0.82 2.31 2.919 (9) 132
O6—H6B···O3iii 0.82 2.06 2.851 (8) 163
C2—H2A···O1iv 0.93 2.54 3.348 (6) 146
C4—H4A···O3v 0.93 2.52 3.411 (6) 160
C8—H8A···O1vi 0.93 2.49 3.381 (6) 161
C9—H9A···O5vii 0.93 2.47 3.382 (6) 167
C13—H13A···O5viii 0.93 2.35 3.265 (6) 166

Symmetry codes: (ii) x+1, y, z; (iii) −x+1, −y+1, −z+2; (iv) x, y+1, z; (v) −x, −y+2, −z+2; (vi) x−1, y, z; (vii) x−1, y−1, z; (viii) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5212).

References

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Associated Data

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Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018411/xu5212sup1.cif

e-67-0m775-sup1.cif (18.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018411/xu5212Isup2.hkl

e-67-0m775-Isup2.hkl (116.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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