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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 11;67(Pt 6):o1378. doi: 10.1107/S1600536811017028

Diphenyl (cyclo­pentyl­amido)­phospho­nate

Fahimeh Sabbaghi a,*, Mehrdad Pourayoubi b, Poorya Zargaran b, Giuseppe Bruno c, Hadi Amiri Rudbari c
PMCID: PMC3120324  PMID: 21754768

Abstract

In the title mol­ecule, C17H20NO3P, the P atom is bonded in a distorted tetra­hedral environment. The dihedral angle between the two phenyl rings is 23.52 (10)°. The phosphoryl and N—H groups are anti with respect to one another. The –CH2–CH2–CH2–CH2– sequence of atoms in the cyclo­pentyl ring is disordered over two sets of sites with refined occupancies of 0.574 (10) and 0.426 (10). In the crystal, mol­ecules are linked via N—H⋯O=P hydrogen bonds to form extended chains along [010].

Related literature

For a related structure, see: Pourayoubi et al. (2011).graphic file with name e-67-o1378-scheme1.jpg

Experimental

Crystal data

  • C17H20NO3P

  • M r = 317.31

  • Monoclinic, Inline graphic

  • a = 18.0095 (4) Å

  • b = 5.3471 (1) Å

  • c = 17.9387 (4) Å

  • β = 109.731 (1)°

  • V = 1626.05 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.18 mm−1

  • T = 296 K

  • 0.5 × 0.4 × 0.2 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004) T min = 0.709, T max = 0.747

  • 139394 measured reflections

  • 3531 independent reflections

  • 3180 reflections with I > 2σ(I)

  • R int = 0.021

Refinement

  • R[F 2 > 2σ(F 2)] = 0.037

  • wR(F 2) = 0.110

  • S = 1.08

  • 3531 reflections

  • 240 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and enCIFer (Allen et al., 2004).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017028/lh5228sup1.cif

e-67-o1378-sup1.cif (21.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017028/lh5228Isup2.hkl

e-67-o1378-Isup2.hkl (169.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811017028/lh5228Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N—H⋯O1i 0.790 (19) 2.23 (2) 3.0039 (17) 167.7 (19)

Symmetry code: (i) Inline graphic.

Acknowledgments

Support of this investigation by Zanjan Branch, Islamic Azad University, is gratefully acknowledged.

supplementary crystallographic information

Comment

We have already studied the crystal structure of a diphenyl(amido)phosphonate, (C6H5O)2P(O)(NHCH2(2-ClC6H4) (Pourayoubi et al., 2011). Here, we report the synthesis and crystal structure of title compound.

The P═O, P—O and P—N bond lengths are standard for (amido)phosphonate compounds. The P atom has a distorted tetrahedral configuration (Fig. 1) with the bond angles in the range of 99.72 (6)° [O2–P–O3] to 115.93 (6)° [O1–P–O2]. The phosphoryl group and the N–H unit are in an anti orientation with respect to each other which allows adjacent molecules to form extended chains along [010] via N—H···O(P) hydrogen bonds (Table 1).

Experimental

To a solution of (C6H5O)2P(O)Cl in chloroform, a solution of cyclopentylamine (1:2 mole ratio) in chloroform was added at 273 K. After 4 h stirring, the solvent was removed and product was washed with distilled water. Single crystals were obtained from a solution of the title compound in CH3OH after slow evaporation at room temperature.

Refinement

The nitrogen bonded hydrogen atom was found in a differnce Fourier map and allowed to refine while all other hydrogen atoms were placed in calculated positions with C–H = 0.93-0.98Å and with Uiso(H) = 1.2Ueq(C). The –CH2–CH2–CH2–CH2– sequence of atoms in the cyclopentyl ring are disordered over two sets of sites with refined occupancies 0.574 (10) and 0.426 (10).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with ellipsoids shown at the 50% probability level. The disorder is not shown.

Crystal data

C17H20NO3P F(000) = 672
Mr = 317.31 Dx = 1.296 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 9100 reflections
a = 18.0095 (4) Å θ = 2.3–32.9°
b = 5.3471 (1) Å µ = 0.18 mm1
c = 17.9387 (4) Å T = 296 K
β = 109.731 (1)° Irregular, colorless
V = 1626.05 (6) Å3 0.5 × 0.4 × 0.2 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 3531 independent reflections
Radiation source: fine-focus sealed tube 3180 reflections with I > 2σ(I)
graphite Rint = 0.021
φ and ω scans θmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) h = −23→23
Tmin = 0.709, Tmax = 0.747 k = −6→6
139394 measured reflections l = −22→22

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110 H atoms treated by a mixture of independent and constrained refinement
S = 1.08 w = 1/[σ2(Fo2) + (0.0497P)2 + 0.5717P] where P = (Fo2 + 2Fc2)/3
3531 reflections (Δ/σ)max = 0.04
240 parameters Δρmax = 0.23 e Å3
0 restraints Δρmin = −0.28 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
C1 0.11088 (11) 0.7234 (4) 0.15643 (15) 0.0736 (6)
H1A 0.1163 0.5834 0.1931 0.088* 0.574 (10)
C2 0.0736 (5) 0.9286 (12) 0.1911 (5) 0.108 (3) 0.574 (10)
H2A 0.0896 0.9112 0.2482 0.130* 0.574 (10)
H2B 0.0900 1.0919 0.1790 0.130* 0.574 (10)
C3 0.0542 (3) 0.6434 (17) 0.0887 (4) 0.105 (3) 0.574 (10)
H3A 0.0622 0.4685 0.0793 0.125* 0.574 (10)
H3B 0.0562 0.7400 0.0437 0.125* 0.574 (10)
C4 −0.0107 (7) 0.901 (2) 0.1558 (11) 0.114 (5) 0.574 (10)
H4A −0.0339 1.0511 0.1267 0.136* 0.574 (10)
H4B −0.0344 0.8714 0.1962 0.136* 0.574 (10)
C5 −0.0237 (3) 0.6791 (19) 0.1003 (5) 0.111 (2) 0.574 (10)
H5A −0.0381 0.5316 0.1238 0.133* 0.574 (10)
H5B −0.0650 0.7139 0.0503 0.133* 0.574 (10)
H1AA 0.1016 0.5426 0.1550 0.088* 0.426 (10)
C2A 0.0824 (7) 0.830 (4) 0.2078 (6) 0.164 (7) 0.426 (10)
H2A1 0.1020 1.0001 0.2192 0.197* 0.426 (10)
H2A2 0.0978 0.7367 0.2570 0.197* 0.426 (10)
C3A 0.0515 (4) 0.856 (3) 0.0735 (5) 0.121 (4) 0.426 (10)
H3A1 0.0694 1.0221 0.0664 0.146* 0.426 (10)
H3A2 0.0477 0.7548 0.0274 0.146* 0.426 (10)
C4A −0.0101 (9) 0.830 (4) 0.1673 (13) 0.151 (8) 0.426 (10)
H4A1 −0.0320 0.6723 0.1766 0.181* 0.426 (10)
H4A2 −0.0335 0.9642 0.1882 0.181* 0.426 (10)
C5A −0.0243 (6) 0.864 (3) 0.0878 (8) 0.131 (4) 0.426 (10)
H5A1 −0.0497 1.0243 0.0711 0.157* 0.426 (10)
H5A2 −0.0590 0.7336 0.0577 0.157* 0.426 (10)
C6 0.38086 (8) 0.6852 (3) 0.24407 (8) 0.0428 (3)
C7 0.37482 (10) 0.8825 (3) 0.29063 (10) 0.0530 (4)
H7 0.3370 1.0062 0.2706 0.064*
C8 0.42607 (11) 0.8939 (4) 0.36780 (11) 0.0642 (4)
H8 0.4225 1.0252 0.4004 0.077*
C9 0.48253 (11) 0.7112 (4) 0.39663 (11) 0.0657 (5)
H9 0.5167 0.7189 0.4487 0.079*
C10 0.48839 (10) 0.5181 (4) 0.34858 (12) 0.0637 (4)
H10 0.5271 0.3968 0.3680 0.076*
C11 0.43704 (9) 0.5027 (3) 0.27138 (10) 0.0534 (4)
H11 0.4405 0.3714 0.2387 0.064*
C12 0.29427 (10) 0.1941 (3) 0.02869 (10) 0.0553 (4)
H12 0.3133 0.1604 0.0827 0.066*
C13 0.31354 (11) 0.0410 (4) −0.02407 (12) 0.0640 (5)
H13 0.3458 −0.0972 −0.0052 0.077*
C14 0.28593 (12) 0.0892 (4) −0.10368 (12) 0.0708 (5)
H14 0.2993 −0.0153 −0.1386 0.085*
C15 0.23842 (12) 0.2924 (4) −0.13150 (10) 0.0706 (5)
H15 0.2194 0.3250 −0.1856 0.085*
C16 0.21843 (10) 0.4497 (4) −0.08008 (9) 0.0569 (4)
H16 0.1866 0.5886 −0.0991 0.068*
C17 0.24637 (9) 0.3976 (3) −0.00026 (8) 0.0452 (3)
N 0.19186 (8) 0.7736 (3) 0.16096 (8) 0.0493 (3)
O1 0.23902 (7) 0.31497 (19) 0.17324 (6) 0.0509 (3)
O2 0.33107 (6) 0.6759 (2) 0.16438 (6) 0.0469 (3)
O3 0.22198 (7) 0.5640 (2) 0.04688 (6) 0.0529 (3)
P 0.24508 (2) 0.56130 (6) 0.14026 (2) 0.04116 (13)
H 0.2031 (11) 0.915 (4) 0.1566 (11) 0.057 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0531 (10) 0.0536 (10) 0.1190 (17) −0.0082 (8) 0.0356 (11) −0.0161 (11)
C2 0.072 (4) 0.092 (4) 0.175 (8) −0.012 (2) 0.060 (5) −0.073 (4)
C3 0.058 (2) 0.141 (5) 0.107 (4) −0.013 (3) 0.019 (2) −0.056 (4)
C4 0.072 (5) 0.107 (5) 0.170 (12) 0.018 (4) 0.052 (6) −0.029 (5)
C5 0.050 (2) 0.147 (6) 0.129 (5) −0.012 (3) 0.022 (3) −0.027 (5)
C1A 0.0531 (10) 0.0536 (10) 0.1190 (17) −0.0082 (8) 0.0356 (11) −0.0161 (11)
C2A 0.061 (4) 0.38 (2) 0.062 (3) −0.018 (9) 0.034 (3) −0.024 (8)
C3A 0.061 (3) 0.210 (12) 0.087 (4) 0.012 (5) 0.018 (3) 0.046 (6)
C4A 0.060 (7) 0.28 (2) 0.128 (10) −0.052 (9) 0.058 (7) −0.058 (13)
C5A 0.075 (5) 0.165 (11) 0.148 (8) 0.014 (6) 0.032 (5) 0.035 (9)
C6 0.0413 (7) 0.0400 (7) 0.0492 (7) −0.0041 (6) 0.0180 (6) 0.0033 (6)
C7 0.0535 (8) 0.0436 (8) 0.0596 (9) 0.0028 (7) 0.0161 (7) −0.0015 (7)
C8 0.0679 (11) 0.0583 (10) 0.0613 (10) −0.0034 (8) 0.0153 (8) −0.0124 (8)
C9 0.0566 (10) 0.0737 (12) 0.0567 (9) −0.0057 (9) 0.0059 (8) 0.0023 (9)
C10 0.0478 (8) 0.0617 (10) 0.0736 (11) 0.0073 (8) 0.0101 (8) 0.0083 (9)
C11 0.0486 (8) 0.0469 (8) 0.0650 (10) 0.0025 (7) 0.0198 (7) −0.0024 (7)
C12 0.0640 (9) 0.0521 (9) 0.0489 (8) 0.0033 (7) 0.0180 (7) −0.0015 (7)
C13 0.0666 (11) 0.0576 (10) 0.0727 (11) 0.0035 (8) 0.0300 (9) −0.0089 (8)
C14 0.0743 (12) 0.0815 (14) 0.0667 (11) −0.0092 (10) 0.0370 (10) −0.0217 (10)
C15 0.0744 (12) 0.0967 (15) 0.0435 (8) −0.0090 (11) 0.0238 (8) −0.0067 (9)
C16 0.0545 (9) 0.0676 (11) 0.0463 (8) −0.0004 (8) 0.0138 (7) 0.0055 (7)
C17 0.0462 (7) 0.0477 (8) 0.0410 (7) −0.0069 (6) 0.0138 (6) −0.0034 (6)
N 0.0497 (7) 0.0374 (7) 0.0636 (8) −0.0043 (5) 0.0227 (6) −0.0056 (6)
O1 0.0638 (6) 0.0359 (5) 0.0532 (6) −0.0033 (5) 0.0199 (5) 0.0019 (4)
O2 0.0486 (6) 0.0486 (6) 0.0459 (5) −0.0031 (4) 0.0190 (4) 0.0027 (4)
O3 0.0659 (7) 0.0478 (6) 0.0416 (5) 0.0109 (5) 0.0136 (5) 0.0021 (4)
P 0.0474 (2) 0.0344 (2) 0.0416 (2) −0.00097 (14) 0.01477 (15) 0.00036 (13)

Geometric parameters (Å, °)

C1—C3 1.365 (5) C6—O2 1.4088 (17)
C1—N 1.458 (2) C7—C8 1.382 (2)
C1—C2 1.524 (6) C7—H7 0.9300
C1—H1A 0.9800 C8—C9 1.378 (3)
C2—C4 1.442 (16) C8—H8 0.9300
C2—H2A 0.9700 C9—C10 1.372 (3)
C2—H2B 0.9700 C9—H9 0.9300
C3—C5 1.499 (7) C10—C11 1.384 (2)
C3—H3A 0.9700 C10—H10 0.9300
C3—H3B 0.9700 C11—H11 0.9300
C4—C5 1.516 (16) C12—C17 1.377 (2)
C4—H4A 0.9700 C12—C13 1.381 (2)
C4—H4B 0.9700 C12—H12 0.9300
C5—H5A 0.9700 C13—C14 1.369 (3)
C5—H5B 0.9700 C13—H13 0.9300
C2A—C4A 1.577 (19) C14—C15 1.369 (3)
C2A—H2A1 0.9700 C14—H14 0.9300
C2A—H2A2 0.9700 C15—C16 1.383 (3)
C3A—C5A 1.472 (12) C15—H15 0.9300
C3A—H3A1 0.9700 C16—C17 1.376 (2)
C3A—H3A2 0.9700 C16—H16 0.9300
C4A—C5A 1.37 (3) C17—O3 1.3968 (18)
C4A—H4A1 0.9700 N—P 1.6078 (14)
C4A—H4A2 0.9700 N—H 0.793 (19)
C5A—H5A1 0.9700 O1—P 1.4630 (11)
C5A—H5A2 0.9700 O2—P 1.5839 (10)
C6—C11 1.372 (2) O3—P 1.5838 (11)
C6—C7 1.373 (2)
C3—C1—N 122.8 (3) C11—C6—C7 122.00 (15)
C3—C1—C2 106.8 (4) C11—C6—O2 118.51 (13)
N—C1—C2 114.5 (3) C7—C6—O2 119.39 (13)
C3—C1—H1A 103.5 C6—C7—C8 118.69 (15)
N—C1—H1A 103.5 C6—C7—H7 120.7
C2—C1—H1A 103.5 C8—C7—H7 120.7
C4—C2—C1 106.9 (6) C9—C8—C7 120.23 (17)
C4—C2—H2A 110.3 C9—C8—H8 119.9
C1—C2—H2A 110.4 C7—C8—H8 119.9
C4—C2—H2B 110.3 C10—C9—C8 120.07 (17)
C1—C2—H2B 110.3 C10—C9—H9 120.0
H2A—C2—H2B 108.6 C8—C9—H9 120.0
C1—C3—C5 106.9 (4) C9—C10—C11 120.43 (17)
C1—C3—H3A 110.3 C9—C10—H10 119.8
C5—C3—H3A 110.3 C11—C10—H10 119.8
C1—C3—H3B 110.3 C6—C11—C10 118.57 (16)
C5—C3—H3B 110.3 C6—C11—H11 120.7
H3A—C3—H3B 108.6 C10—C11—H11 120.7
C2—C4—C5 105.9 (6) C17—C12—C13 118.71 (16)
C2—C4—H4A 110.6 C17—C12—H12 120.6
C5—C4—H4A 110.5 C13—C12—H12 120.6
C2—C4—H4B 110.5 C14—C13—C12 121.09 (18)
C5—C4—H4B 110.6 C14—C13—H13 119.5
H4A—C4—H4B 108.7 C12—C13—H13 119.5
C3—C5—C4 104.2 (6) C13—C14—C15 119.48 (17)
C3—C5—H5A 110.9 C13—C14—H14 120.3
C4—C5—H5A 110.9 C15—C14—H14 120.3
C3—C5—H5B 110.9 C14—C15—C16 120.75 (17)
C4—C5—H5B 110.9 C14—C15—H15 119.6
H5A—C5—H5B 108.9 C16—C15—H15 119.6
C4A—C2A—H2A1 110.5 C17—C16—C15 118.99 (18)
C4A—C2A—H2A2 110.6 C17—C16—H16 120.5
H2A1—C2A—H2A2 108.7 C15—C16—H16 120.5
C5A—C3A—H3A1 111.4 C12—C17—C16 120.99 (15)
C5A—C3A—H3A2 111.3 C12—C17—O3 124.08 (13)
H3A1—C3A—H3A2 109.2 C16—C17—O3 114.93 (14)
C5A—C4A—C2A 106.1 (12) C1—N—P 121.36 (12)
C5A—C4A—H4A1 110.5 C1—N—H 117.0 (14)
C2A—C4A—H4A1 110.5 P—N—H 117.3 (14)
C5A—C4A—H4A2 110.5 C6—O2—P 121.30 (8)
C2A—C4A—H4A2 110.5 C17—O3—P 127.62 (10)
H4A1—C4A—H4A2 108.7 O1—P—O2 115.93 (6)
C4A—C5A—C3A 108.6 (9) O1—P—O3 114.03 (6)
C4A—C5A—H5A1 110.0 O2—P—O3 99.72 (6)
C3A—C5A—H5A1 109.9 O1—P—N 114.24 (7)
C4A—C5A—H5A2 110.0 O2—P—N 105.55 (6)
C3A—C5A—H5A2 110.0 O3—P—N 105.88 (7)
H5A1—C5A—H5A2 108.4
C3—C1—C2—C4 18.7 (10) C13—C12—C17—C16 −0.5 (2)
N—C1—C2—C4 158.1 (8) C13—C12—C17—O3 179.15 (15)
N—C1—C3—C5 −165.1 (4) C15—C16—C17—C12 0.8 (3)
C2—C1—C3—C5 −29.9 (7) C15—C16—C17—O3 −178.89 (15)
C1—C2—C4—C5 0.3 (13) C3—C1—N—P −57.8 (5)
C1—C3—C5—C4 29.8 (11) C2—C1—N—P 170.1 (4)
C2—C4—C5—C3 −17.2 (14) C11—C6—O2—P 98.41 (14)
C2A—C4A—C5A—C3A 7(2) C7—C6—O2—P −85.20 (15)
C11—C6—C7—C8 −1.3 (2) C12—C17—O3—P 2.0 (2)
O2—C6—C7—C8 −177.58 (15) C16—C17—O3—P −178.33 (11)
C6—C7—C8—C9 0.7 (3) C6—O2—P—O1 −49.72 (12)
C7—C8—C9—C10 0.4 (3) C6—O2—P—O3 −172.58 (10)
C8—C9—C10—C11 −1.1 (3) C6—O2—P—N 77.80 (12)
C7—C6—C11—C10 0.7 (2) C17—O3—P—O1 −46.75 (15)
O2—C6—C11—C10 177.00 (14) C17—O3—P—O2 77.45 (13)
C9—C10—C11—C6 0.5 (3) C17—O3—P—N −173.19 (12)
C17—C12—C13—C14 0.1 (3) C1—N—P—O1 −43.33 (18)
C12—C13—C14—C15 0.0 (3) C1—N—P—O2 −171.87 (15)
C13—C14—C15—C16 0.3 (3) C1—N—P—O3 82.99 (16)
C14—C15—C16—C17 −0.7 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N—H···O1i 0.790 (19) 2.23 (2) 3.0039 (17) 167.7 (19)

Symmetry codes: (i) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5228).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017028/lh5228sup1.cif

e-67-o1378-sup1.cif (21.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017028/lh5228Isup2.hkl

e-67-o1378-Isup2.hkl (169.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811017028/lh5228Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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