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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 20;67(Pt 6):o1438. doi: 10.1107/S1600536811017934

N,N,N′,N′-Tetra­kis(2-hy­droxy-5-methyl­benz­yl)ethane-1,2-diamine dimethyl­formamide disolvate

Nuan-Sheng Wang a, Yong-Tao Wang a, Xiu-Kai Guo b, Tian-Duo Li a,*
PMCID: PMC3120359  PMID: 21754816

Abstract

The title compound, C34H40N2O4·2C3H7NO, was synthesized by the Mannich condensation of ethane­diamine, formaldehyde and p-cresol. In the crystal, the tetra­phenol mol­ecule is arranged around an inversion center. The mol­ecule and the dimethyl­formamide solvate are linked through an O—H⋯O hydrogen bond. An intra­molecular O—H⋯N hydrogen bond occurs in the tetra­phenol mol­ecule, which may influence the mol­ecular confomation. Futhermore, C—H⋯O and π–π stacking inter­actions [centroid–centroid distance = 3.7081 (14) Å] stabilize the crystal packing, building a three-dimensional network.

Related literature

For applications of the title compound, see: Liu et al. (2007); Tshuva et al. (2000); For related structures, see: Hou et al. (2010); Higham et al. (2006); Farrell et al. (2007).graphic file with name e-67-o1438-scheme1.jpg

Experimental

Crystal data

  • C34H40N2O4·2C3H7NO

  • M r = 686.87

  • Monoclinic, Inline graphic

  • a = 11.574 (2) Å

  • b = 6.3557 (12) Å

  • c = 26.343 (5) Å

  • β = 94.939 (3)°

  • V = 1930.7 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 298 K

  • 0.50 × 0.32 × 0.27 mm

Data collection

  • Bruker SMART APEX diffractometer

  • 9607 measured reflections

  • 3569 independent reflections

  • 2667 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.058

  • wR(F 2) = 0.154

  • S = 1.07

  • 3569 reflections

  • 232 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017934/dn2686sup1.cif

e-67-o1438-sup1.cif (27.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017934/dn2686Isup2.hkl

e-67-o1438-Isup2.hkl (175KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811017934/dn2686Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536811017934/dn2686Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N1 0.82 1.98 2.705 (2) 147
O2—H2⋯O3 0.82 1.87 2.690 (2) 177
C18—H18⋯O3i 0.93 2.56 3.368 (3) 145

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Shandong Province Higher Educational Science and Technology Program for financial support (J09LB03).

supplementary crystallographic information

Comment

Multidentate aminophenol are of interest as metallochelators and as ligands for bioinorganic modeling, catalysis, and medical imaging.(Higham et al., 2006; Farrell et al., 2007). Some of them in combination with metals are used as active catalysts for alkenes polymerization (Tshuva et al., 2000) and initiators in the ring-openingpolymerization of lactones (Liu et al., 2007). Herein, we report the crystal structure of the title compound, 'C34H40N2O4.(C3H7NO)2'.

The N, N'-Tetrakis(2-hydroxy-5-methylbenzyl)-1, 2-ethanediamine molecule is arranged around inversion center located in the middle of the CH2-CH2 bond. The DMF solvate is linked to this molecule through O-H···O hydrogen bonds (Fig. 1). There is also a weak intramolecular O-H···N interactions which might influence the conformation of the molecule (Table 1) (Hou et al., 2010).

The occurence of weak C-H···O interactions (Table 1) and π-π stacking between the symmetry related C1—C6 phenyl rings (Centroid to centroid distance of 3.7081 (14)Å, interplanar distance of 3.6891 (8)° and slippage of 0.375Å) result in the formation of a three dimensional network (Fig. 2)

Experimental

The title compound was prepared by mixing ethylenediamine (1.0 mmol), paraformaldehyde (4.0 mmol) and p-cresol (10 mmol) were heated to 90°C and stirred for 18 h. This reaction requires no solvent nor inert atmosphere. At the end of the reaction, 10ml of ethanol was added to the mixtures to remove the unreacted p-cresol, then sonicated 10 minutes. Finally a white precipitate product was collected by filtration in 56% yield.

Refinement

All H atoms were placed in idealized positions and treated as riding, with C—H = 0.93 Å (CH), 0.97 Å (CH2), 0.96 Å (CH3), O—H = 0.82 Å and and Uiso(H) = 1.2 Ueq(CH and CH2), Uiso(H) = 1.5 Ueq(CH3 and OH).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with the atom labeling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small sphere of arbitrary radii. Hydrogen bonds are shown as dashed lines. Hydrogen atoms not involved in hydrogen bonding have been omitted for clarity. [Symmetry code: (i) -x+1, -y+1, -z+1]

Fig. 2.

Fig. 2.

Molecular packing of the title compound viewing along the crystallographic b-axis. Hydrogen bonds are shown as dashed lines. Hydrogen atoms not involved in hydrogen bonding have been omitted for clarity.

Crystal data

C34H40N2O4·2C3H7NO F(000) = 740
Mr = 686.87 Dx = 1.182 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2283 reflections
a = 11.574 (2) Å θ = 2.3–22.4°
b = 6.3557 (12) Å µ = 0.08 mm1
c = 26.343 (5) Å T = 298 K
β = 94.939 (3)° Block, colourless
V = 1930.7 (6) Å3 0.50 × 0.32 × 0.27 mm
Z = 2

Data collection

Bruker SMART APEX diffractometer 2667 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.029
graphite θmax = 25.5°, θmin = 1.6°
φ and ω scans h = −13→13
9607 measured reflections k = 0→7
3569 independent reflections l = 0→31

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0747P)2 + 0.2941P] where P = (Fo2 + 2Fc2)/3
3569 reflections (Δ/σ)max = 0.003
232 parameters Δρmax = 0.19 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.81761 (16) 0.6724 (3) 0.50272 (8) 0.0459 (5)
C2 0.80450 (15) 0.4662 (3) 0.48545 (7) 0.0399 (5)
C3 0.86027 (16) 0.4078 (3) 0.44304 (7) 0.0472 (5)
H3 0.8508 0.2709 0.4309 0.057*
C4 0.92929 (17) 0.5440 (4) 0.41797 (8) 0.0546 (6)
C5 0.94148 (18) 0.7469 (4) 0.43666 (9) 0.0602 (6)
H5 0.9880 0.8417 0.4209 0.072*
C6 0.88609 (17) 0.8110 (4) 0.47813 (9) 0.0567 (6)
H6 0.8948 0.9487 0.4897 0.068*
C7 0.9908 (2) 0.4688 (5) 0.37314 (10) 0.0846 (9)
H7A 1.0649 0.4111 0.3851 0.127*
H7B 1.0018 0.5849 0.3508 0.127*
H7C 0.9450 0.3624 0.3551 0.127*
C8 0.74176 (15) 0.3055 (3) 0.51447 (7) 0.0434 (5)
H8A 0.7213 0.1869 0.4923 0.052*
H8B 0.7933 0.2546 0.5428 0.052*
C9 0.59865 (17) 0.2520 (3) 0.57452 (7) 0.0465 (5)
H9A 0.6064 0.1064 0.5642 0.056*
H9B 0.5174 0.2778 0.5787 0.056*
C10 0.66842 (16) 0.2860 (3) 0.62476 (7) 0.0444 (5)
C11 0.74762 (17) 0.1400 (4) 0.64530 (8) 0.0503 (5)
H11 0.7593 0.0176 0.6271 0.060*
C12 0.81018 (19) 0.1691 (4) 0.69194 (8) 0.0571 (6)
C13 0.7899 (2) 0.3509 (5) 0.71814 (8) 0.0648 (7)
H13 0.8299 0.3731 0.7498 0.078*
C14 0.71194 (19) 0.5012 (4) 0.69888 (8) 0.0615 (6)
H14 0.7001 0.6229 0.7174 0.074*
C15 0.65167 (18) 0.4696 (4) 0.65193 (8) 0.0521 (6)
C16 0.8989 (2) 0.0118 (5) 0.71276 (11) 0.0892 (9)
H16A 0.9725 0.0439 0.7004 0.134*
H16B 0.8751 −0.1269 0.7019 0.134*
H16C 0.9057 0.0181 0.7493 0.134*
C17 0.54400 (16) 0.4187 (3) 0.49300 (7) 0.0463 (5)
H17A 0.5051 0.2856 0.4858 0.056*
H17B 0.5782 0.4636 0.4624 0.056*
N1 0.63564 (12) 0.3898 (3) 0.53418 (5) 0.0406 (4)
O1 0.76581 (13) 0.7432 (3) 0.54411 (6) 0.0640 (5)
H1 0.7179 0.6567 0.5520 0.096*
O2 0.57293 (15) 0.6113 (3) 0.63071 (6) 0.0721 (5)
H2 0.5563 0.6957 0.6525 0.108*
C18 0.4736 (2) 1.0737 (4) 0.69918 (8) 0.0546 (6)
H18 0.5089 1.1710 0.7219 0.066*
C19 0.3253 (3) 0.9941 (6) 0.63369 (15) 0.1233 (13)
H19A 0.3785 0.8864 0.6252 0.185*
H19B 0.2982 1.0695 0.6034 0.185*
H19C 0.2606 0.9307 0.6484 0.185*
C20 0.3383 (3) 1.3486 (5) 0.67385 (12) 0.0963 (10)
H20A 0.3860 1.4260 0.6990 0.144*
H20B 0.2604 1.3422 0.6837 0.144*
H20C 0.3385 1.4176 0.6414 0.144*
N2 0.38342 (17) 1.1383 (3) 0.67004 (7) 0.0636 (5)
O3 0.51586 (16) 0.8979 (3) 0.69941 (6) 0.0731 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0384 (10) 0.0481 (13) 0.0502 (12) 0.0064 (9) −0.0022 (9) −0.0022 (10)
C2 0.0319 (9) 0.0477 (12) 0.0389 (10) 0.0071 (8) −0.0024 (8) 0.0010 (9)
C3 0.0417 (11) 0.0552 (13) 0.0442 (11) 0.0071 (9) 0.0001 (9) −0.0009 (10)
C4 0.0419 (11) 0.0752 (17) 0.0469 (12) 0.0068 (11) 0.0041 (9) 0.0115 (11)
C5 0.0422 (12) 0.0656 (17) 0.0723 (15) −0.0005 (11) 0.0026 (11) 0.0213 (13)
C6 0.0442 (12) 0.0465 (13) 0.0783 (16) 0.0004 (10) −0.0007 (11) 0.0036 (11)
C7 0.0739 (17) 0.120 (3) 0.0630 (15) −0.0014 (17) 0.0253 (14) 0.0050 (16)
C8 0.0400 (10) 0.0458 (12) 0.0440 (11) 0.0088 (9) 0.0025 (8) −0.0009 (9)
C9 0.0428 (11) 0.0514 (13) 0.0455 (11) −0.0021 (9) 0.0049 (9) −0.0026 (9)
C10 0.0452 (11) 0.0516 (13) 0.0377 (10) −0.0029 (9) 0.0106 (8) 0.0003 (9)
C11 0.0540 (12) 0.0500 (13) 0.0477 (11) −0.0015 (10) 0.0098 (10) 0.0024 (10)
C12 0.0546 (13) 0.0705 (16) 0.0458 (12) −0.0007 (11) 0.0019 (10) 0.0075 (11)
C13 0.0586 (14) 0.093 (2) 0.0422 (12) −0.0093 (13) −0.0011 (11) −0.0027 (13)
C14 0.0633 (14) 0.0755 (17) 0.0469 (12) −0.0021 (12) 0.0109 (11) −0.0160 (11)
C15 0.0515 (12) 0.0600 (15) 0.0458 (12) 0.0057 (10) 0.0107 (10) −0.0030 (10)
C16 0.0865 (19) 0.100 (2) 0.0772 (18) 0.0155 (17) −0.0128 (16) 0.0156 (16)
C17 0.0416 (10) 0.0563 (13) 0.0402 (10) 0.0066 (9) −0.0011 (8) −0.0110 (9)
N1 0.0364 (8) 0.0495 (10) 0.0361 (8) 0.0050 (7) 0.0033 (7) −0.0033 (7)
O1 0.0680 (11) 0.0568 (11) 0.0690 (10) −0.0011 (8) 0.0163 (8) −0.0191 (8)
O2 0.0804 (12) 0.0741 (13) 0.0611 (10) 0.0264 (9) 0.0021 (9) −0.0153 (9)
C18 0.0682 (14) 0.0544 (15) 0.0419 (11) 0.0012 (12) 0.0088 (11) −0.0042 (10)
C19 0.123 (3) 0.123 (3) 0.114 (3) −0.020 (2) −0.048 (2) −0.016 (2)
C20 0.096 (2) 0.089 (2) 0.103 (2) 0.0314 (18) 0.0033 (18) 0.0172 (18)
N2 0.0689 (12) 0.0650 (14) 0.0549 (11) −0.0008 (10) −0.0066 (10) 0.0031 (10)
O3 0.0999 (13) 0.0595 (11) 0.0612 (10) 0.0219 (10) 0.0149 (9) −0.0026 (8)

Geometric parameters (Å, °)

C1—O1 1.365 (2) C12—C16 1.502 (4)
C1—C6 1.383 (3) C13—C14 1.380 (3)
C1—C2 1.391 (3) C13—H13 0.9300
C2—C3 1.388 (3) C14—C15 1.381 (3)
C2—C8 1.500 (3) C14—H14 0.9300
C3—C4 1.384 (3) C15—O2 1.366 (3)
C3—H3 0.9300 C16—H16A 0.9600
C4—C5 1.383 (3) C16—H16B 0.9600
C4—C7 1.508 (3) C16—H16C 0.9600
C5—C6 1.375 (3) C17—N1 1.462 (2)
C5—H5 0.9300 C17—C17i 1.518 (4)
C6—H6 0.9300 C17—H17A 0.9700
C7—H7A 0.9600 C17—H17B 0.9700
C7—H7B 0.9600 O1—H1 0.8200
C7—H7C 0.9600 O2—H2 0.8200
C8—N1 1.475 (2) C18—O3 1.219 (3)
C8—H8A 0.9700 C18—N2 1.307 (3)
C8—H8B 0.9700 C18—H18 0.9300
C9—N1 1.469 (2) C19—N2 1.449 (4)
C9—C10 1.506 (3) C19—H19A 0.9600
C9—H9A 0.9700 C19—H19B 0.9600
C9—H9B 0.9700 C19—H19C 0.9600
C10—C11 1.381 (3) C20—N2 1.442 (3)
C10—C15 1.391 (3) C20—H20A 0.9600
C11—C12 1.384 (3) C20—H20B 0.9600
C11—H11 0.9300 C20—H20C 0.9600
C12—C13 1.376 (4)
O1—C1—C6 118.2 (2) C12—C13—C14 122.1 (2)
O1—C1—C2 121.92 (18) C12—C13—H13 119.0
C6—C1—C2 119.9 (2) C14—C13—H13 119.0
C3—C2—C1 118.04 (19) C13—C14—C15 119.5 (2)
C3—C2—C8 120.45 (18) C13—C14—H14 120.3
C1—C2—C8 121.25 (17) C15—C14—H14 120.3
C4—C3—C2 123.0 (2) O2—C15—C14 122.6 (2)
C4—C3—H3 118.5 O2—C15—C10 117.40 (18)
C2—C3—H3 118.5 C14—C15—C10 120.0 (2)
C5—C4—C3 117.3 (2) C12—C16—H16A 109.5
C5—C4—C7 122.3 (2) C12—C16—H16B 109.5
C3—C4—C7 120.4 (2) H16A—C16—H16B 109.5
C6—C5—C4 121.3 (2) C12—C16—H16C 109.5
C6—C5—H5 119.4 H16A—C16—H16C 109.5
C4—C5—H5 119.4 H16B—C16—H16C 109.5
C5—C6—C1 120.6 (2) N1—C17—C17i 111.36 (19)
C5—C6—H6 119.7 N1—C17—H17A 109.4
C1—C6—H6 119.7 C17i—C17—H17A 109.4
C4—C7—H7A 109.5 N1—C17—H17B 109.4
C4—C7—H7B 109.5 C17i—C17—H17B 109.4
H7A—C7—H7B 109.5 H17A—C17—H17B 108.0
C4—C7—H7C 109.5 C17—N1—C9 111.94 (15)
H7A—C7—H7C 109.5 C17—N1—C8 110.94 (14)
H7B—C7—H7C 109.5 C9—N1—C8 109.95 (15)
N1—C8—C2 112.72 (16) C1—O1—H1 109.5
N1—C8—H8A 109.0 C15—O2—H2 109.5
C2—C8—H8A 109.0 O3—C18—N2 126.2 (2)
N1—C8—H8B 109.0 O3—C18—H18 116.9
C2—C8—H8B 109.0 N2—C18—H18 116.9
H8A—C8—H8B 107.8 N2—C19—H19A 109.5
N1—C9—C10 112.49 (16) N2—C19—H19B 109.5
N1—C9—H9A 109.1 H19A—C19—H19B 109.5
C10—C9—H9A 109.1 N2—C19—H19C 109.5
N1—C9—H9B 109.1 H19A—C19—H19C 109.5
C10—C9—H9B 109.1 H19B—C19—H19C 109.5
H9A—C9—H9B 107.8 N2—C20—H20A 109.5
C11—C10—C15 118.63 (19) N2—C20—H20B 109.5
C11—C10—C9 122.36 (19) H20A—C20—H20B 109.5
C15—C10—C9 119.00 (18) N2—C20—H20C 109.5
C10—C11—C12 122.5 (2) H20A—C20—H20C 109.5
C10—C11—H11 118.8 H20B—C20—H20C 109.5
C12—C11—H11 118.8 C18—N2—C20 121.7 (2)
C13—C12—C11 117.3 (2) C18—N2—C19 119.4 (3)
C13—C12—C16 121.1 (2) C20—N2—C19 118.8 (3)
C11—C12—C16 121.6 (2)
O1—C1—C2—C3 179.97 (17) C10—C11—C12—C13 0.7 (3)
C6—C1—C2—C3 −0.9 (3) C10—C11—C12—C16 −177.9 (2)
O1—C1—C2—C8 −5.9 (3) C11—C12—C13—C14 −1.0 (3)
C6—C1—C2—C8 173.23 (18) C16—C12—C13—C14 177.5 (2)
C1—C2—C3—C4 1.1 (3) C12—C13—C14—C15 0.2 (4)
C8—C2—C3—C4 −173.15 (18) C13—C14—C15—O2 179.7 (2)
C2—C3—C4—C5 −0.2 (3) C13—C14—C15—C10 0.9 (3)
C2—C3—C4—C7 177.9 (2) C11—C10—C15—O2 179.93 (18)
C3—C4—C5—C6 −0.7 (3) C9—C10—C15—O2 −0.9 (3)
C7—C4—C5—C6 −178.9 (2) C11—C10—C15—C14 −1.2 (3)
C4—C5—C6—C1 0.9 (3) C9—C10—C15—C14 177.91 (19)
O1—C1—C6—C5 179.13 (19) C17i—C17—N1—C9 80.0 (3)
C2—C1—C6—C5 0.0 (3) C17i—C17—N1—C8 −156.7 (2)
C3—C2—C8—N1 −144.07 (17) C10—C9—N1—C17 −157.41 (16)
C1—C2—C8—N1 41.9 (2) C10—C9—N1—C8 78.8 (2)
N1—C9—C10—C11 −109.0 (2) C2—C8—N1—C17 73.2 (2)
N1—C9—C10—C15 71.9 (2) C2—C8—N1—C9 −162.47 (15)
C15—C10—C11—C12 0.4 (3) O3—C18—N2—C20 178.2 (2)
C9—C10—C11—C12 −178.70 (19) O3—C18—N2—C19 −0.4 (4)

Symmetry codes: (i) −x+1, −y+1, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1 0.82 1.98 2.705 (2) 147
O2—H2···O3 0.82 1.87 2.690 (2) 177
C18—H18···O3ii 0.93 2.56 3.368 (3) 145

Symmetry codes: (ii) −x+1, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DN2686).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017934/dn2686sup1.cif

e-67-o1438-sup1.cif (27.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017934/dn2686Isup2.hkl

e-67-o1438-Isup2.hkl (175KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811017934/dn2686Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536811017934/dn2686Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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