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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 28;67(Pt 6):m819. doi: 10.1107/S1600536811019854

Bis(acetyl­acetonato-κ2 O,O′)(pyridine-κN)zinc(II)

Sanjaya Brahma a, M Srinidhi b, S A Shivashankar a, T Narasimhamurthy a, R S Rathore c,*
PMCID: PMC3120430  PMID: 21754690

Abstract

In the title compound, [Zn(C5H7O2)2(C5H5N)], the metal atom has square-pyramidal coordination geometry with the basal plane defined by the four O atoms of the chelating acetyl­acetonate ligands and with the axial position occupied by the pyridine N atom. The crystal packing is characterized by a C—H⋯O hydrogen-bonded ribbon structure approximately parallel to [10Inline graphic].

Related literature

For related structures, see: Brahma et al. (2008); Neelgund et al. (2007); Urs et al. (2001).graphic file with name e-67-0m819-scheme1.jpg

Experimental

Crystal data

  • [Zn(C5H7O2)2(C5H5N)]

  • M r = 342.68

  • Monoclinic, Inline graphic

  • a = 7.846 (5) Å

  • b = 27.047 (4) Å

  • c = 8.199 (5) Å

  • β = 117.984 (3)°

  • V = 1536.5 (14) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.61 mm−1

  • T = 295 K

  • 0.32 × 0.23 × 0.12 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.64, T max = 0.83

  • 10840 measured reflections

  • 2939 independent reflections

  • 2568 reflections with I > 2σ(I)

  • R int = 0.074

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.106

  • S = 0.99

  • 2939 reflections

  • 194 parameters

  • H-atom parameters constrained

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.74 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 and PLATON.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811019854/ng5159sup1.cif

e-67-0m819-sup1.cif (19.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019854/ng5159Isup2.hkl

e-67-0m819-Isup2.hkl (141.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C13—H13⋯O2i 0.93 2.50 3.141 (5) 126
C14—H14⋯O3ii 0.93 2.59 3.500 (5) 165
C4—H4A⋯O4iii 0.96 2.41 3.304 (5) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We acknowledge the CCD facility, set up under the IRHPA–DST program at the Indian Institute of Science, Bangalore. SB thanks the Council of Scientific and Industrial research (CSIR), New Delhi, for the award of research associateship. RSR gratefully acknowledges the CSIR for funding under the scientist’s pool scheme.

supplementary crystallographic information

Comment

The title compound, [Zn(II)(C5H7O2)2(C5H5N)], is a mixed-ligand metal-organic precursor for chemical vapour deposition, with the Zn atom being five coordinate. Metal-organic (MO) complexes have been widely employed as precursors for chemical vapour deposition (CVD) for the growth of various thin films. The title complex, (I), has been synthesized and discussed here. Several such MOCVD precursors have been previously synthesized and characterized (Urs et al., 2001; Neelgund et al., 2007; Brahma et al., 2008; and references therein).

The structure of (I) with adopted atom-numbering scheme is shown in Fig 1. The coordination geometry around Zn(II) is square-pyramidal with the basal plane defined by four O atoms from two chelating acetylacetonate (acac) ligands and the axial position occupied by N atom from pyridine ring. The five-membered ring formed by acetylacetonate and Zn atom is significantly non-planar.

The geometric parameters for observed short contacts are listed in Table 1. Crystal packing diagram is shown in Fig 2. The intermolecular C13—H13···O2 and C14—H14..O3 interactions, combined together generate C—H···O bonded ribbon structure that is approximately parallel to [101]-direction. A short C4—H4A···O4 contact associated with methyl group is also observed in the crystal.

Experimental

The title complex was synthesized from their precursor hydrate complex, i.e. bis(acetylacetonato)aquazinc(II). Acetylacetone (10 mmol, 1.02 ml) was added to zinc diacetate dihydrate solution (5 mmol, 1.099 g; 30% ethanol-water mixture). Potassium hydroxide (KOH) solution (10 mmol, 0.56 g; 30% ethanol-water mixture) was added gradually to achieve a pH of 6–7. After stirring at room temperature for 1 hr, the mixture yielded a precipitate, which was filtered off and dried in a vacuum. The product was recrystallized from ethanol, giving a pure hydrate complex. To obtain the title complex from the hydrate, an ethanol solution of the hydrate was prepared and added in a (1:1) molar ratio to ethanol solutions of pyridine and stirred for 12 hr. Single crystals suitable for X-ray diffraction were grown by slow evaporation of the resultant solution in ethanol at low temperature.

Refinement

The refections (1,0,0) and (1 1 0) were omitted as they were affected by extinction or absorption. Hydrogen atoms were placed in their stereochemically expected positions and refined with the riding options. The distances with hydrogen atoms are: C(aromatic)—H = 0.93 Å, C(methyl)—H = 0.96 Å, and Uiso = 1.2 Ueq(parent) [1.5 Ueq(parent) for methyl groups].

Figures

Fig. 1.

Fig. 1.

A view of (I) with non-H atoms shown as probability ellipsoids at 30% levels.

Fig. 2.

Fig. 2.

C—H···O hydrogen bonded ribbon structure in (I)

Crystal data

[Zn(C5H7O2)2(C5H5N)] F(000) = 712
Mr = 342.68 Dx = 1.481 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2570 reflections
a = 7.846 (5) Å θ = 1.5–26°
b = 27.047 (4) Å µ = 1.61 mm1
c = 8.199 (5) Å T = 295 K
β = 117.984 (3)° Needle, colorless
V = 1536.5 (14) Å3 0.32 × 0.23 × 0.12 mm
Z = 4

Data collection

Bruker APEXII CCD area-detector diffractometer 2939 independent reflections
Radiation source: fine-focus sealed tube 2568 reflections with I > 2σ(I)
graphite Rint = 0.074
φ and ω scans θmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −9→9
Tmin = 0.64, Tmax = 0.83 k = −33→33
10840 measured reflections l = −10→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106 H-atom parameters constrained
S = 0.99 w = 1/[σ2(Fo2) + (0.0548P)2] where P = (Fo2 + 2Fc2)/3
2939 reflections (Δ/σ)max = 0.001
194 parameters Δρmax = 0.36 e Å3
0 restraints Δρmin = −0.74 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 1.0371 (4) 0.17049 (11) −0.0161 (4) 0.0224 (7)
C2 0.9678 (5) 0.12881 (11) −0.1366 (5) 0.0244 (7)
H2 0.9648 0.1306 −0.2512 0.029*
C3 0.9046 (4) 0.08575 (11) −0.0895 (4) 0.0212 (7)
C4 1.1147 (5) 0.21268 (12) −0.0821 (5) 0.0320 (8)
H4A 1.0578 0.2431 −0.0715 0.048*
H4B 1.0835 0.2074 −0.2088 0.048*
H4C 1.2524 0.2144 −0.0079 0.048*
C5 0.8558 (5) 0.04217 (12) −0.2241 (4) 0.0309 (8)
H5A 0.9542 0.0173 −0.1707 0.046*
H5B 0.8492 0.0536 −0.3379 0.046*
H5C 0.7336 0.0284 −0.2480 0.046*
C6 0.5739 (4) 0.11064 (12) 0.2966 (4) 0.0208 (6)
C7 0.5487 (4) 0.16068 (11) 0.3209 (4) 0.0236 (7)
H7 0.4373 0.1695 0.3271 0.028*
C8 0.6730 (4) 0.19786 (11) 0.3364 (4) 0.0221 (7)
C9 0.4272 (4) 0.07458 (12) 0.2835 (5) 0.0298 (8)
H9A 0.3979 0.0526 0.1817 0.045*
H9B 0.3123 0.0918 0.2643 0.045*
H9C 0.4760 0.0558 0.3959 0.045*
C10 0.6314 (5) 0.25065 (12) 0.3684 (5) 0.0335 (8)
H10A 0.7281 0.2615 0.4875 0.050*
H10B 0.5067 0.2523 0.3633 0.050*
H10C 0.6329 0.2716 0.2745 0.050*
C11 1.2801 (4) 0.13543 (11) 0.6180 (4) 0.0221 (7)
H11 1.2780 0.1688 0.5894 0.026*
C12 1.4307 (4) 0.11783 (13) 0.7803 (4) 0.0285 (7)
H12 1.5266 0.1393 0.8595 0.034*
C13 1.4377 (4) 0.06812 (12) 0.8242 (4) 0.0261 (7)
H13 1.5385 0.0557 0.9322 0.031*
C14 1.2931 (4) 0.03751 (11) 0.7054 (4) 0.0238 (7)
H14 1.2927 0.0040 0.7307 0.029*
C15 1.1475 (4) 0.05834 (11) 0.5460 (4) 0.0198 (6)
H15 1.0499 0.0376 0.4647 0.024*
N1 1.1384 (3) 0.10638 (9) 0.5017 (3) 0.0176 (5)
O1 1.0419 (3) 0.17533 (8) 0.1475 (3) 0.0242 (5)
O2 0.8871 (3) 0.07874 (8) 0.0621 (3) 0.0217 (5)
O3 0.7104 (3) 0.09184 (7) 0.2837 (3) 0.0210 (5)
O4 0.8203 (3) 0.19193 (8) 0.3239 (3) 0.0263 (5)
Zn1 0.91346 (4) 0.130795 (11) 0.25584 (4) 0.01638 (14)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0176 (14) 0.0202 (16) 0.0358 (17) 0.0069 (12) 0.0179 (14) 0.0082 (13)
C2 0.0246 (17) 0.0297 (19) 0.0240 (16) 0.0000 (12) 0.0156 (14) 0.0032 (13)
C3 0.0099 (13) 0.0284 (18) 0.0237 (15) −0.0003 (12) 0.0066 (12) −0.0032 (13)
C4 0.0346 (18) 0.0235 (18) 0.049 (2) 0.0021 (14) 0.0294 (17) 0.0071 (15)
C5 0.0325 (18) 0.0310 (19) 0.0335 (18) −0.0077 (14) 0.0189 (15) −0.0101 (15)
C6 0.0128 (14) 0.0285 (18) 0.0217 (15) 0.0005 (12) 0.0086 (12) 0.0032 (13)
C7 0.0154 (14) 0.0273 (17) 0.0314 (16) 0.0022 (12) 0.0138 (13) −0.0016 (13)
C8 0.0194 (15) 0.0228 (17) 0.0247 (15) 0.0033 (12) 0.0109 (13) −0.0002 (13)
C9 0.0214 (16) 0.0290 (19) 0.045 (2) −0.0026 (13) 0.0206 (15) 0.0002 (15)
C10 0.0317 (18) 0.0261 (19) 0.050 (2) 0.0026 (14) 0.0256 (17) −0.0053 (16)
C11 0.0168 (15) 0.0191 (16) 0.0288 (17) −0.0032 (11) 0.0095 (14) −0.0016 (12)
C12 0.0177 (16) 0.0283 (18) 0.0298 (17) −0.0054 (13) 0.0030 (14) −0.0026 (14)
C13 0.0151 (14) 0.0343 (19) 0.0226 (15) 0.0043 (12) 0.0035 (13) 0.0038 (14)
C14 0.0223 (15) 0.0200 (16) 0.0297 (16) 0.0029 (12) 0.0128 (13) 0.0049 (13)
C15 0.0152 (14) 0.0197 (15) 0.0235 (15) −0.0041 (11) 0.0082 (12) −0.0016 (12)
N1 0.0119 (11) 0.0196 (13) 0.0204 (12) −0.0004 (9) 0.0069 (10) −0.0020 (10)
O1 0.0262 (11) 0.0171 (11) 0.0339 (12) −0.0033 (8) 0.0177 (10) 0.0000 (9)
O2 0.0180 (10) 0.0248 (12) 0.0246 (11) −0.0059 (8) 0.0119 (9) −0.0050 (9)
O3 0.0141 (10) 0.0197 (11) 0.0314 (11) −0.0002 (8) 0.0126 (9) −0.0009 (9)
O4 0.0217 (11) 0.0194 (12) 0.0430 (13) −0.0010 (9) 0.0193 (10) −0.0040 (10)
Zn1 0.0114 (2) 0.0171 (2) 0.0196 (2) 0.00060 (11) 0.00634 (16) 0.00057 (13)

Geometric parameters (Å, °)

C1—O1 1.331 (4) C9—H9B 0.9600
C1—C2 1.428 (4) C9—H9C 0.9600
C1—C4 1.508 (4) C10—H10A 0.9600
C2—C3 1.390 (4) C10—H10B 0.9600
C2—H2 0.9300 C10—H10C 0.9600
C3—O2 1.327 (3) C11—N1 1.329 (4)
C3—C5 1.535 (4) C11—C12 1.385 (4)
C4—H4A 0.9600 C11—H11 0.9300
C4—H4B 0.9600 C12—C13 1.386 (5)
C4—H4C 0.9600 C12—H12 0.9300
C5—H5A 0.9600 C13—C14 1.373 (4)
C5—H5B 0.9600 C13—H13 0.9300
C5—H5C 0.9600 C14—C15 1.389 (4)
C6—O3 1.234 (3) C14—H14 0.9300
C6—C7 1.396 (4) C15—N1 1.342 (4)
C6—C9 1.473 (4) C15—H15 0.9300
C7—C8 1.365 (4) N1—Zn1 2.068 (2)
C7—H7 0.9300 O1—Zn1 2.024 (2)
C8—O4 1.218 (4) O2—Zn1 2.059 (2)
C8—C10 1.515 (4) O3—Zn1 2.011 (2)
C9—H9A 0.9600 O4—Zn1 1.991 (2)
O1—C1—C2 126.6 (3) C8—C10—H10B 109.5
O1—C1—C4 117.5 (3) H10A—C10—H10B 109.5
C2—C1—C4 115.9 (3) C8—C10—H10C 109.5
C3—C2—C1 122.6 (3) H10A—C10—H10C 109.5
C3—C2—H2 118.7 H10B—C10—H10C 109.5
C1—C2—H2 118.7 N1—C11—C12 122.4 (3)
O2—C3—C2 126.0 (3) N1—C11—H11 118.8
O2—C3—C5 117.6 (3) C12—C11—H11 118.8
C2—C3—C5 116.4 (3) C11—C12—C13 119.7 (3)
C1—C4—H4A 109.5 C11—C12—H12 120.2
C1—C4—H4B 109.5 C13—C12—H12 120.2
H4A—C4—H4B 109.5 C14—C13—C12 118.8 (3)
C1—C4—H4C 109.5 C14—C13—H13 120.6
H4A—C4—H4C 109.5 C12—C13—H13 120.6
H4B—C4—H4C 109.5 C13—C14—C15 117.7 (3)
C3—C5—H5A 109.5 C13—C14—H14 121.2
C3—C5—H5B 109.5 C15—C14—H14 121.2
H5A—C5—H5B 109.5 N1—C15—C14 124.3 (3)
C3—C5—H5C 109.5 N1—C15—H15 117.9
H5A—C5—H5C 109.5 C14—C15—H15 117.9
H5B—C5—H5C 109.5 C11—N1—C15 117.2 (3)
O3—C6—C7 126.8 (3) C11—N1—Zn1 123.7 (2)
O3—C6—C9 113.6 (3) C15—N1—Zn1 119.05 (19)
C7—C6—C9 119.6 (3) C1—O1—Zn1 126.83 (19)
C8—C7—C6 125.8 (3) C3—O2—Zn1 127.44 (19)
C8—C7—H7 117.1 C6—O3—Zn1 124.0 (2)
C6—C7—H7 117.1 C8—O4—Zn1 128.4 (2)
O4—C8—C7 124.1 (3) O4—Zn1—O3 89.35 (9)
O4—C8—C10 115.4 (3) O4—Zn1—O1 87.28 (9)
C7—C8—C10 120.5 (3) O3—Zn1—O1 161.13 (8)
C6—C9—H9A 109.5 O4—Zn1—O2 150.12 (8)
C6—C9—H9B 109.5 O3—Zn1—O2 86.05 (8)
H9A—C9—H9B 109.5 O1—Zn1—O2 87.66 (9)
C6—C9—H9C 109.5 O4—Zn1—N1 104.45 (10)
H9A—C9—H9C 109.5 O3—Zn1—N1 94.65 (10)
H9B—C9—H9C 109.5 O1—Zn1—N1 104.18 (10)
C8—C10—H10A 109.5 O2—Zn1—N1 105.34 (9)
O1—C1—C2—C3 −3.7 (5) C8—O4—Zn1—O3 −11.8 (3)
C4—C1—C2—C3 175.4 (3) C8—O4—Zn1—O1 149.6 (3)
C1—C2—C3—O2 5.0 (5) C8—O4—Zn1—O2 69.1 (3)
C1—C2—C3—C5 −173.4 (3) C8—O4—Zn1—N1 −106.4 (3)
O3—C6—C7—C8 −0.6 (5) C6—O3—Zn1—O4 13.0 (2)
C9—C6—C7—C8 179.5 (3) C6—O3—Zn1—O1 −66.6 (4)
C6—C7—C8—O4 2.9 (5) C6—O3—Zn1—O2 −137.4 (2)
C6—C7—C8—C10 −178.1 (3) C6—O3—Zn1—N1 117.5 (2)
N1—C11—C12—C13 0.9 (5) C1—O1—Zn1—O4 −133.7 (2)
C11—C12—C13—C14 −0.5 (5) C1—O1—Zn1—O3 −53.7 (4)
C12—C13—C14—C15 0.4 (4) C1—O1—Zn1—O2 16.8 (2)
C13—C14—C15—N1 −0.5 (5) C1—O1—Zn1—N1 122.1 (2)
C12—C11—N1—C15 −0.9 (4) C3—O2—Zn1—O4 64.5 (3)
C12—C11—N1—Zn1 −178.9 (2) C3—O2—Zn1—O3 146.3 (2)
C14—C15—N1—C11 0.8 (4) C3—O2—Zn1—O1 −15.9 (2)
C14—C15—N1—Zn1 178.8 (2) C3—O2—Zn1—N1 −119.9 (2)
C2—C1—O1—Zn1 −11.0 (4) C11—N1—Zn1—O4 −48.2 (2)
C4—C1—O1—Zn1 169.9 (2) C15—N1—Zn1—O4 133.9 (2)
C2—C3—O2—Zn1 8.4 (4) C11—N1—Zn1—O3 −138.7 (2)
C5—C3—O2—Zn1 −173.22 (19) C15—N1—Zn1—O3 43.4 (2)
C7—C6—O3—Zn1 −9.9 (4) C11—N1—Zn1—O1 42.6 (2)
C9—C6—O3—Zn1 170.01 (19) C15—N1—Zn1—O1 −135.3 (2)
C7—C8—O4—Zn1 6.3 (5) C11—N1—Zn1—O2 134.1 (2)
C10—C8—O4—Zn1 −172.8 (2) C15—N1—Zn1—O2 −43.8 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C13—H13···O2i 0.93 2.50 3.141 (5) 126
C14—H14···O3ii 0.93 2.59 3.500 (5) 165
C4—H4A···O4iii 0.96 2.41 3.304 (5) 155

Symmetry codes: (i) x+1, y, z+1; (ii) −x+2, −y, −z+1; (iii) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5159).

References

  1. Brahma, S., Sachin, H. P., Shivashankar, S. A., Narasimhamurthy, T. & Rathore, R. S. (2008). Acta Cryst. C64, m140–m143. [DOI] [PubMed]
  2. Bruker (2004). APEX2, SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Neelgund, G. M., Shivashankar, S. A., Narasimhamurthy, T. & Rathore, R. S. (2007). Acta Cryst. C63, m74–m76. [DOI] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  7. Urs, U. K., Anitha, K. C., Raghunathan, K. L., Shivashankar, S. A., Robinson, W. T. & Row, T. N. G. (2001). Acta Cryst. E57, m242–m243.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811019854/ng5159sup1.cif

e-67-0m819-sup1.cif (19.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019854/ng5159Isup2.hkl

e-67-0m819-Isup2.hkl (141.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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