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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 7;67(Pt 6):o1331–o1332. doi: 10.1107/S1600536811016655

2-[(E)-(2,4-Dihy­droxy­benzyl­idene)aza­nium­yl]-3-phenyl­propano­ate

Hadariah Bahron a,‡, Fatimatuzzahraa Mohd Fadzel a, Karimah Kassim a, Madhukar Hemamalini b, Hoong-Kun Fun b,*,§
PMCID: PMC3120434  PMID: 21754728

Abstract

The title compound, C16H15NO4, exists as a zwitterion in the solid state, with the carb­oxy­lic acid group being deprotonated and the imine N atom being protonated. The mol­ecule adopts an E configuration about the C=N double bond. The dihedral angle between the benzene rings is 46.34 (4)°. An intra­molecular N—H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, adjacent mol­ecules are connected by inter­molecular O—H⋯O and C—H⋯O hydrogen bonds, forming supra­molecular ribbons along the a axis.

Related literature

For details of Schiff bases and their applications, see: Dolaz et al. (2009 ▶); Kumar et al. (2010 ▶); Qiao et al. (2011 ▶); Sauri et al. (2009 ▶); Tamami & Ghasemi (2011 ▶). For related structures, see: Bahron et al. (2010 ▶); Hemamalini & Fun (2011 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). graphic file with name e-67-o1331-scheme1.jpg

Experimental

Crystal data

  • C16H15NO4

  • M r = 285.29

  • Monoclinic, Inline graphic

  • a = 9.3943 (1) Å

  • b = 6.8946 (1) Å

  • c = 20.7251 (3) Å

  • β = 92.065 (1)°

  • V = 1341.49 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 K

  • 0.34 × 0.27 × 0.17 mm

Data collection

  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.966, T max = 0.982

  • 22479 measured reflections

  • 6007 independent reflections

  • 4783 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.125

  • S = 1.03

  • 6007 reflections

  • 202 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.56 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016655/rz2592sup1.cif

e-67-o1331-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016655/rz2592Isup2.hkl

e-67-o1331-Isup2.hkl (288.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811016655/rz2592Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1—H1O1⋯O4i 0.863 (15) 1.790 (14) 2.6302 (9) 163.9 (15)
N1—H1N1⋯O1 0.864 (14) 2.051 (15) 2.6810 (9) 129.1 (12)
O2—H1O2⋯O3ii 1.03 (2) 1.51 (2) 2.5310 (10) 179 (2)
C5—H5A⋯O2iii 0.95 2.56 3.3155 (10) 137
C12—H12A⋯O2iv 0.95 2.46 3.1781 (10) 132

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

HB, FMF and KK wish to thank both Universiti Teknologi MARA (UiTM) and Universiti Sains Malaysia (USM) for research facilities, and the Malaysian Ministry of Higher Education for the research grant FRGS UiTM 5/3/FST/(12/2008). HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.

supplementary crystallographic information

Comment

Schiff bases have received considerable attention and remain important in the field of coordination chemistry vastly due to their simple synthesis and versatility. They are widely reported to have extensive potential applications in various biological and pharmaceutical fields (Dolaz et al., 2009) as antimicrobial (Kumar et al., 2010) and antitumor (Qiao et al., 2011) agents. They also display potential applications as corrosion inhibitors (Sauri et al., 2009) and catalysts (Tamami & Ghasemi, 2011). The title molecule, (I), is a Schiff base derived from DL-phenylalanine and 2,4-dihydroxybenzaldehyde using the procedure reported by Bahron et al. (2010). It crystallizes as a zwitterion in which the imine N is protonated. A similar zwitterionic structure was reported by Hemamalini & Fun (2011).

The asymmetric unit of the title compound is shown in Fig. 1. The molecule is a zwitterion in the crystal, with the carboxylic acid group deprotonated and the imine N atom protonated. It adopts an E configuration about the central C9═N1 double bond [1.3045 (3) Å] with the torsion angle C10-C9-N1-C8 = -175.36 (7)°. The dihedral angle between the benzene (C10–C15) and phenyl (C1–C6) rings is 46.34 (4)°.

In the crystal structure (Fig. 2), an intramolecular N1—H1N1···O1 hydrogen bond (Table 1) generates an S(6) ring motif (Bernstein et al., 1995). Furthermore, adjacent molecules are connected by intermolecular O1—H1O1···O4, O2—H1O2···O3, C5—H5A···O2 and C12—H12A···O2 (Table 1) hydrogen bonds forming supramolecular ribbons along the a axis.

Experimental

DL-phenylalanine (2 mmol, 0.330 g ) was dissolved in absolute ethanol (20 mL), into which 2,4-dihydroxybenzaldehyde (2 mmol, 0.276 g) was added, followed by refluxing for two hours. The solution was left to slowly cool to room temperature upon which pale orange crystals were produced. These were filtered off, washed with ice-cold ethanol and air dried (yield 68%). Melting point: 540–543 K. Analytical calculated for C16H15NO4 (%): C, 67.36; H, 5.30; N, 4.91. Found (%): C, 67.13; H, 5.49; N, 4.89. IR (cm-1): ν(C═N) 1642.9 (m), ν(C–OH) 1243.7 (w), ν(C═O) 1880.6 (w).

Refinement

Atoms H1O1, H1N1 and H1O2 were located from a difference Fourier map and refined freely [N–H = 0.864 (16)Å; O–H = 0.863 (15)–1.025 (19)Å]. The remaining H atoms were positioned geometrically [C–H = 0.95–1.0 Å ] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids. The intramolecular hydrogen bond is shown as a dashed line.

Fig. 2.

Fig. 2.

The crystal packing of the title compound with hydrogen bonds shown as dashed lines. H atoms not involved in the intermolecular interactions have been omitted for clarity.

Crystal data

C16H15NO4 F(000) = 600
Mr = 285.29 Dx = 1.413 Mg m−3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 9091 reflections
a = 9.3943 (1) Å θ = 3.0–35.3°
b = 6.8946 (1) Å µ = 0.10 mm−1
c = 20.7251 (3) Å T = 100 K
β = 92.065 (1)° Block, orange
V = 1341.49 (3) Å3 0.34 × 0.27 × 0.17 mm
Z = 4

Data collection

Bruker SMART APEXII CCD area-detector diffractometer 6007 independent reflections
Radiation source: fine-focus sealed tube 4783 reflections with I > 2σ(I)
graphite Rint = 0.025
φ and ω scans θmax = 35.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −15→13
Tmin = 0.966, Tmax = 0.982 k = −8→11
22479 measured reflections l = −33→32

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0674P)2 + 0.2835P] where P = (Fo2 + 2Fc2)/3
6007 reflections (Δ/σ)max < 0.001
202 parameters Δρmax = 0.56 e Å−3
0 restraints Δρmin = −0.24 e Å−3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.60361 (6) 0.80079 (9) 0.04375 (3) 0.01400 (12)
O2 0.97519 (6) 0.33854 (10) 0.05402 (3) 0.01685 (13)
O3 0.03702 (7) 0.98745 (10) 0.07713 (4) 0.01988 (14)
O4 0.26610 (7) 1.04016 (9) 0.05323 (3) 0.01783 (13)
N1 0.34885 (7) 0.69321 (10) 0.08580 (3) 0.01219 (12)
C1 0.33058 (10) 0.53563 (14) 0.25232 (4) 0.01942 (16)
H1A 0.3954 0.6401 0.2590 0.023*
C2 0.35367 (11) 0.36077 (15) 0.28493 (5) 0.02434 (19)
H2A 0.4337 0.3473 0.3139 0.029*
C3 0.26067 (12) 0.20648 (14) 0.27537 (5) 0.02416 (19)
H3A 0.2770 0.0875 0.2975 0.029*
C4 0.14316 (11) 0.22715 (13) 0.23307 (5) 0.02018 (17)
H4A 0.0792 0.1219 0.2262 0.024*
C5 0.11937 (9) 0.40174 (13) 0.20089 (4) 0.01695 (15)
H5A 0.0386 0.4150 0.1723 0.020*
C6 0.21269 (9) 0.55797 (12) 0.20999 (4) 0.01422 (14)
C7 0.18457 (9) 0.74664 (12) 0.17511 (4) 0.01563 (15)
H7A 0.2505 0.8462 0.1933 0.019*
H7B 0.0863 0.7891 0.1836 0.019*
C8 0.20180 (8) 0.73766 (12) 0.10126 (4) 0.01250 (13)
H8A 0.1359 0.6381 0.0817 0.015*
C9 0.40809 (8) 0.52254 (11) 0.09102 (4) 0.01214 (13)
H9A 0.3492 0.4173 0.1029 0.015*
C10 0.55370 (8) 0.48144 (11) 0.08037 (4) 0.01121 (13)
C11 0.65246 (8) 0.61982 (11) 0.05775 (4) 0.01132 (13)
C12 0.79342 (8) 0.56952 (12) 0.04987 (4) 0.01286 (14)
H12A 0.8591 0.6634 0.0354 0.015*
C13 0.83916 (8) 0.37933 (12) 0.06334 (4) 0.01261 (14)
C14 0.74286 (8) 0.23932 (12) 0.08580 (4) 0.01396 (14)
H14A 0.7742 0.1113 0.0955 0.017*
C15 0.60318 (8) 0.29109 (12) 0.09343 (4) 0.01367 (14)
H15A 0.5381 0.1965 0.1079 0.016*
C16 0.16518 (8) 0.93989 (12) 0.07349 (4) 0.01381 (14)
H1O1 0.6599 (16) 0.855 (2) 0.0171 (7) 0.030 (4)*
H1N1 0.3969 (16) 0.791 (2) 0.0723 (7) 0.033 (4)*
H1O2 0.999 (2) 0.196 (3) 0.0635 (8) 0.052 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0131 (2) 0.0096 (2) 0.0195 (3) 0.00209 (19) 0.0036 (2) 0.0038 (2)
O2 0.0113 (2) 0.0159 (3) 0.0236 (3) 0.0048 (2) 0.0034 (2) 0.0040 (2)
O3 0.0129 (3) 0.0170 (3) 0.0299 (3) 0.0054 (2) 0.0033 (2) 0.0064 (2)
O4 0.0165 (3) 0.0150 (3) 0.0223 (3) 0.0018 (2) 0.0054 (2) 0.0063 (2)
N1 0.0109 (3) 0.0108 (3) 0.0150 (3) 0.0021 (2) 0.0019 (2) 0.0017 (2)
C1 0.0211 (4) 0.0189 (4) 0.0182 (4) 0.0017 (3) −0.0009 (3) 0.0003 (3)
C2 0.0292 (5) 0.0244 (4) 0.0191 (4) 0.0075 (4) −0.0044 (3) 0.0027 (3)
C3 0.0371 (5) 0.0170 (4) 0.0186 (4) 0.0083 (4) 0.0039 (4) 0.0047 (3)
C4 0.0267 (4) 0.0136 (3) 0.0207 (4) 0.0006 (3) 0.0076 (3) 0.0013 (3)
C5 0.0179 (4) 0.0155 (3) 0.0176 (4) 0.0011 (3) 0.0031 (3) 0.0011 (3)
C6 0.0165 (3) 0.0127 (3) 0.0137 (3) 0.0024 (3) 0.0043 (3) 0.0011 (3)
C7 0.0192 (4) 0.0125 (3) 0.0156 (3) 0.0028 (3) 0.0048 (3) 0.0018 (3)
C8 0.0104 (3) 0.0113 (3) 0.0160 (3) 0.0027 (2) 0.0022 (2) 0.0023 (2)
C9 0.0118 (3) 0.0110 (3) 0.0137 (3) 0.0016 (2) 0.0013 (2) 0.0010 (2)
C10 0.0102 (3) 0.0100 (3) 0.0135 (3) 0.0013 (2) 0.0013 (2) 0.0009 (2)
C11 0.0118 (3) 0.0098 (3) 0.0123 (3) 0.0016 (2) 0.0009 (2) 0.0002 (2)
C12 0.0108 (3) 0.0117 (3) 0.0162 (3) 0.0016 (2) 0.0015 (2) 0.0011 (3)
C13 0.0114 (3) 0.0129 (3) 0.0136 (3) 0.0029 (2) 0.0003 (2) 0.0007 (2)
C14 0.0129 (3) 0.0108 (3) 0.0182 (3) 0.0027 (2) 0.0014 (3) 0.0020 (3)
C15 0.0125 (3) 0.0107 (3) 0.0179 (3) 0.0013 (2) 0.0021 (2) 0.0022 (3)
C16 0.0136 (3) 0.0122 (3) 0.0157 (3) 0.0028 (2) 0.0017 (3) 0.0029 (3)

Geometric parameters (Å, °)

O1—C11 1.3572 (9) C5—H5A 0.9500
O1—H1O1 0.863 (15) C6—C7 1.5068 (12)
O2—C13 1.3293 (10) C7—C8 1.5461 (12)
O2—H1O2 1.025 (19) C7—H7A 0.9900
O3—C16 1.2527 (10) C7—H7B 0.9900
O4—C16 1.2577 (10) C8—C16 1.5425 (11)
N1—C9 1.3045 (10) C8—H8A 1.0000
N1—C8 1.4617 (10) C9—C10 1.4220 (11)
N1—H1N1 0.864 (16) C9—H9A 0.9500
C1—C2 1.3952 (13) C10—C15 1.4152 (11)
C1—C6 1.3965 (12) C10—C11 1.4220 (11)
C1—H1A 0.9500 C11—C12 1.3842 (11)
C2—C3 1.3863 (16) C12—C13 1.4048 (11)
C2—H2A 0.9500 C12—H12A 0.9500
C3—C4 1.3921 (15) C13—C14 1.4133 (11)
C3—H3A 0.9500 C14—C15 1.3745 (11)
C4—C5 1.3903 (13) C14—H14A 0.9500
C4—H4A 0.9500 C15—H15A 0.9500
C5—C6 1.3973 (12)
C11—O1—H1O1 108.9 (10) N1—C8—C7 111.03 (6)
C13—O2—H1O2 112.1 (10) C16—C8—C7 107.65 (6)
C9—N1—C8 125.08 (7) N1—C8—H8A 110.1
C9—N1—H1N1 120.3 (10) C16—C8—H8A 110.1
C8—N1—H1N1 114.6 (10) C7—C8—H8A 110.1
C2—C1—C6 120.37 (9) N1—C9—C10 125.23 (7)
C2—C1—H1A 119.8 N1—C9—H9A 117.4
C6—C1—H1A 119.8 C10—C9—H9A 117.4
C3—C2—C1 120.51 (9) C15—C10—C9 117.79 (7)
C3—C2—H2A 119.7 C15—C10—C11 118.13 (7)
C1—C2—H2A 119.7 C9—C10—C11 124.07 (7)
C2—C3—C4 119.53 (9) O1—C11—C12 121.51 (7)
C2—C3—H3A 120.2 O1—C11—C10 117.88 (7)
C4—C3—H3A 120.2 C12—C11—C10 120.60 (7)
C5—C4—C3 120.06 (9) C11—C12—C13 119.84 (7)
C5—C4—H4A 120.0 C11—C12—H12A 120.1
C3—C4—H4A 120.0 C13—C12—H12A 120.1
C4—C5—C6 120.90 (8) O2—C13—C12 117.22 (7)
C4—C5—H5A 119.6 O2—C13—C14 122.24 (7)
C6—C5—H5A 119.6 C12—C13—C14 120.54 (7)
C1—C6—C5 118.64 (8) C15—C14—C13 119.06 (7)
C1—C6—C7 121.20 (8) C15—C14—H14A 120.5
C5—C6—C7 120.17 (8) C13—C14—H14A 120.5
C6—C7—C8 114.68 (7) C14—C15—C10 121.81 (7)
C6—C7—H7A 108.6 C14—C15—H15A 119.1
C8—C7—H7A 108.6 C10—C15—H15A 119.1
C6—C7—H7B 108.6 O3—C16—O4 127.87 (8)
C8—C7—H7B 108.6 O3—C16—C8 114.59 (7)
H7A—C7—H7B 107.6 O4—C16—C8 117.43 (7)
N1—C8—C16 107.91 (6)
C6—C1—C2—C3 0.53 (15) C15—C10—C11—O1 178.38 (7)
C1—C2—C3—C4 −0.27 (15) C9—C10—C11—O1 −1.95 (12)
C2—C3—C4—C5 −0.22 (15) C15—C10—C11—C12 −1.04 (11)
C3—C4—C5—C6 0.45 (14) C9—C10—C11—C12 178.63 (8)
C2—C1—C6—C5 −0.29 (13) O1—C11—C12—C13 −178.40 (7)
C2—C1—C6—C7 179.02 (8) C10—C11—C12—C13 1.00 (12)
C4—C5—C6—C1 −0.19 (13) C11—C12—C13—O2 179.06 (7)
C4—C5—C6—C7 −179.51 (8) C11—C12—C13—C14 −0.93 (12)
C1—C6—C7—C8 112.09 (9) O2—C13—C14—C15 −179.07 (8)
C5—C6—C7—C8 −68.61 (10) C12—C13—C14—C15 0.92 (12)
C9—N1—C8—C16 −166.85 (7) C13—C14—C15—C10 −0.99 (13)
C9—N1—C8—C7 75.39 (10) C9—C10—C15—C14 −178.64 (8)
C6—C7—C8—N1 −63.66 (9) C11—C10—C15—C14 1.05 (12)
C6—C7—C8—C16 178.43 (7) N1—C8—C16—O3 172.58 (7)
C8—N1—C9—C10 −175.36 (7) C7—C8—C16—O3 −67.51 (9)
N1—C9—C10—C15 174.78 (8) N1—C8—C16—O4 −10.87 (10)
N1—C9—C10—C11 −4.90 (13) C7—C8—C16—O4 109.04 (8)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1O1···O4i 0.863 (15) 1.790 (14) 2.6302 (9) 163.9 (15)
N1—H1N1···O1 0.864 (14) 2.051 (15) 2.6810 (9) 129.1 (12)
O2—H1O2···O3ii 1.03 (2) 1.51 (2) 2.5310 (10) 179 (2)
C5—H5A···O2iii 0.95 2.56 3.3155 (10) 137
C12—H12A···O2iv 0.95 2.46 3.1781 (10) 132

Symmetry codes: (i) −x+1, −y+2, −z; (ii) x+1, y−1, z; (iii) x−1, y, z; (iv) −x+2, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2592).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016655/rz2592sup1.cif

e-67-o1331-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016655/rz2592Isup2.hkl

e-67-o1331-Isup2.hkl (288.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811016655/rz2592Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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