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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 7;67(Pt 6):o1306. doi: 10.1107/S1600536811015972

1,10-Phenanthrolin-1-ium hydrogen d,l-tartrate dihydrate

Sit Foon Cheng a, Seik Weng Ng a,*
PMCID: PMC3120439  PMID: 21754708

Abstract

In the title hydrated molecular salt, C12H9N2 +·C4H5O6 ·2H2O, the cation is almost planar (r.m.s. deviation = 0.014 Å); the carbon skeleton of the anion assumes a trans conformation [C—C—C—C torsion angle = −179.86 (14)°]. The carboxyl end of one hydrogen tartrate anion forms a short hydrogen bond to the carboxyl­ate end of another anion [O⋯O = 2.508 (2) Å] in a head-to-tail manner, forming a chain; the chains and water mol­ecules inter­act, generating an O—H⋯O hydrogen-bonded layer. The cation binds to the layer by an N—H⋯O hydrogen bond.

Related literature

For the trihydrated 1,10-phenanthrolin-1-ium salts of d- and l-tartaric acid, see: Derikvand & Olmstead (2010); Wang et al. (2006). graphic file with name e-67-o1306-scheme1.jpg

Experimental

Crystal data

  • C12H9N2 +·C4H5O6 ·2H2O

  • M r = 366.32

  • Triclinic, Inline graphic

  • a = 7.0933 (7) Å

  • b = 10.5849 (11) Å

  • c = 11.4694 (11) Å

  • α = 98.081 (1)°

  • β = 100.350 (1)°

  • γ = 103.903 (1)°

  • V = 806.95 (14) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 100 K

  • 0.40 × 0.10 × 0.10 mm

Data collection

  • Bruker SMART APEX diffractometer

  • 7610 measured reflections

  • 3635 independent reflections

  • 2880 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.160

  • S = 1.04

  • 3635 reflections

  • 267 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015972/bt5536sup1.cif

e-67-o1306-sup1.cif (17.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015972/bt5536Isup2.hkl

e-67-o1306-Isup2.hkl (178.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3⋯O1wi 0.89 (3) 1.82 (3) 2.709 (2) 175 (3)
O4—H4⋯O2wii 0.90 (3) 1.84 (3) 2.739 (2) 172 (3)
O5—H5⋯O2iii 0.99 (3) 1.52 (3) 2.508 (2) 169 (3)
O1w—H12⋯O1 0.93 (3) 1.97 (3) 2.846 (2) 157 (3)
O1w—H11⋯O1iv 0.90 (4) 1.86 (4) 2.753 (2) 173 (4)
O2w—H21⋯O2 0.84 (4) 1.93 (4) 2.764 (2) 168 (3)
O2w—H22⋯O6v 0.87 (3) 1.97 (3) 2.835 (2) 176 (3)
N1—H1⋯O1w 0.93 (3) 1.89 (3) 2.753 (2) 153 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

We thank the University of Malaya for supporting this study.

supplementary crystallographic information

Comment

D-tartaric acid transfers one proton to 1,10-phenanthroline to yield 1,10-phenanthroline hydrogen D-tartrate, which separates from solution as a trihydrate. The hydrogen D-tartrate anions are connected in a head-to-tail fashion by an O–Hcarboxylic acid···Ocarboxyl hydrogen bond [O···O 2.455 (1) Å] (Derikvand & Olmstead, 2010). The identical feature should be presented in the L analog (Wang et al., 2006). The anion and water molecules are linked by extensive O–H···O hydrogen bonds into a three-dimensional network, with the cations occupying the cavities. Racemic tartaric furnishes the corresponding dihydrate. In C12H9N2+ C4H5O4-.2H2O (Scheme I, Fig. 1), the carboxylic acid –CO2H end of one hydrogen (D,L)-tartrate anion forms a short hydrogen bond to the carboxylate –CO2- end of another anion [O···O 2.508 (2) Å] in a head-to-tail manner to form a chain; the chains and water molecules interact to generate an O–H···O hydrogen-bonded layer. The cation binds to the layer by an N–H···O hydrogen bond (Table 1).

Experimental

D,L-Tartaric acid (2 mmol, 0.30 g) and 1,10-phenanthroline (0.33 mmol, 0.06 g) were dissolved in water (5 ml). The solution was heated briefly to dissolve the reactants. The solution was set aside for the growth of colorless crystals, which were isolated after 10 days. The bulk crystals were faintly tinted a shade of pink.

Refinement

Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 1.00 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2 U(C).

The ammonium and water H-atoms were located in a difference Fourier map, and were freely refined.

Omitted from the refinement owing to bad disagreements were these reflections: (-2 - 3 1), (-8 8 2), (2 2 4), (-7 6 7) and (3 - 3 4).

Figures

Fig. 1.

Fig. 1.

Anisotropic displacement ellipsoid plot (Barbour, 2001) of C12H9N2+ C4H5O6-.2H2O at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Hydrogen-bonded layer structure arising from tartrate–water interactions.

Crystal data

C12H9N2+·C4H5O6·2H2O Z = 2
Mr = 366.32 F(000) = 384
Triclinic, P1 Dx = 1.508 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.0933 (7) Å Cell parameters from 2722 reflections
b = 10.5849 (11) Å θ = 2.5–28.2°
c = 11.4694 (11) Å µ = 0.12 mm1
α = 98.081 (1)° T = 100 K
β = 100.350 (1)° Prism, colorless
γ = 103.903 (1)° 0.40 × 0.10 × 0.10 mm
V = 806.95 (14) Å3

Data collection

Bruker SMART APEX diffractometer 2880 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.028
graphite θmax = 27.5°, θmin = 1.8°
ω scans h = −9→9
7610 measured reflections k = −13→13
3635 independent reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.1012P)2 + 0.1854P] where P = (Fo2 + 2Fc2)/3
3635 reflections (Δ/σ)max = 0.001
267 parameters Δρmax = 0.35 e Å3
0 restraints Δρmin = −0.31 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.0272 (2) 0.97612 (14) 0.33939 (12) 0.0172 (3)
O2 0.00294 (19) 1.04199 (14) 0.16223 (12) 0.0167 (3)
O3 0.3922 (2) 0.95680 (14) 0.34847 (12) 0.0163 (3)
O4 0.1832 (2) 0.78094 (13) 0.12086 (12) 0.0154 (3)
O5 0.6410 (2) 1.02428 (13) 0.15147 (12) 0.0153 (3)
O6 0.5609 (2) 0.80301 (14) 0.09605 (13) 0.0192 (3)
O1W 0.2228 (2) 0.90933 (13) 0.55174 (12) 0.0145 (3)
O2W 0.1595 (2) 1.23818 (15) 0.04324 (13) 0.0174 (3)
N1 0.2289 (2) 0.65380 (16) 0.46822 (15) 0.0143 (3)
N2 0.2713 (2) 0.66417 (16) 0.71074 (15) 0.0171 (4)
C1 0.0952 (3) 1.00580 (17) 0.25142 (16) 0.0125 (4)
C2 0.3085 (3) 1.00188 (18) 0.24666 (16) 0.0124 (4)
H2A 0.3902 1.0934 0.2475 0.015*
C3 0.3050 (3) 0.91028 (18) 0.12952 (16) 0.0115 (4)
H3A 0.2505 0.9473 0.0594 0.014*
C4 0.5161 (3) 0.90552 (18) 0.12418 (16) 0.0122 (4)
C5 0.2130 (3) 0.6578 (2) 0.35202 (18) 0.0184 (4)
H5A 0.2027 0.7366 0.3240 0.022*
C6 0.2114 (3) 0.5459 (2) 0.27087 (19) 0.0220 (5)
H6 0.2015 0.5487 0.1876 0.026*
C7 0.2243 (3) 0.4319 (2) 0.31181 (19) 0.0213 (4)
H7 0.2216 0.3552 0.2567 0.026*
C8 0.2417 (3) 0.42852 (19) 0.43589 (19) 0.0178 (4)
C9 0.2446 (3) 0.54419 (18) 0.51418 (17) 0.0138 (4)
C10 0.2550 (3) 0.3129 (2) 0.4856 (2) 0.0220 (5)
H10 0.2530 0.2340 0.4337 0.026*
C11 0.2704 (3) 0.3145 (2) 0.6049 (2) 0.0224 (5)
H11A 0.2778 0.2366 0.6356 0.027*
C12 0.2757 (3) 0.43249 (19) 0.68601 (19) 0.0173 (4)
C13 0.2645 (3) 0.54791 (18) 0.64134 (18) 0.0149 (4)
C14 0.2935 (3) 0.4390 (2) 0.8110 (2) 0.0227 (5)
H14 0.3004 0.3633 0.8456 0.027*
C15 0.3006 (3) 0.5558 (2) 0.8818 (2) 0.0236 (5)
H15 0.3135 0.5626 0.9665 0.028*
C16 0.2888 (3) 0.6661 (2) 0.82806 (18) 0.0210 (4)
H16 0.2936 0.7464 0.8787 0.025*
H3 0.517 (5) 1.006 (3) 0.381 (3) 0.048 (9)*
H4 0.066 (4) 0.767 (3) 0.067 (3) 0.032 (7)*
H5 0.781 (5) 1.020 (3) 0.156 (3) 0.057 (10)*
H11 0.145 (5) 0.944 (4) 0.593 (4) 0.067 (11)*
H12 0.195 (4) 0.938 (3) 0.480 (3) 0.039 (8)*
H21 0.120 (5) 1.172 (4) 0.074 (3) 0.052 (10)*
H22 0.247 (5) 1.223 (3) 0.003 (3) 0.037 (8)*
H1 0.233 (5) 0.731 (3) 0.520 (3) 0.046 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0162 (7) 0.0231 (7) 0.0161 (7) 0.0078 (6) 0.0087 (5) 0.0054 (5)
O2 0.0131 (7) 0.0224 (7) 0.0178 (7) 0.0070 (5) 0.0060 (5) 0.0070 (6)
O3 0.0120 (7) 0.0243 (7) 0.0118 (7) 0.0032 (6) 0.0015 (5) 0.0055 (5)
O4 0.0139 (7) 0.0137 (7) 0.0165 (7) 0.0017 (5) 0.0018 (5) 0.0020 (5)
O5 0.0123 (7) 0.0156 (7) 0.0197 (7) 0.0047 (5) 0.0058 (5) 0.0036 (5)
O6 0.0187 (7) 0.0173 (7) 0.0250 (8) 0.0097 (6) 0.0070 (6) 0.0042 (6)
O1W 0.0160 (7) 0.0181 (7) 0.0111 (7) 0.0070 (5) 0.0038 (5) 0.0037 (5)
O2W 0.0167 (7) 0.0191 (7) 0.0168 (7) 0.0047 (6) 0.0053 (6) 0.0034 (6)
N1 0.0141 (8) 0.0146 (8) 0.0132 (8) 0.0028 (6) 0.0023 (6) 0.0017 (6)
N2 0.0195 (8) 0.0153 (8) 0.0154 (8) 0.0040 (6) 0.0017 (7) 0.0033 (6)
C1 0.0139 (9) 0.0108 (8) 0.0123 (9) 0.0027 (7) 0.0044 (7) −0.0003 (7)
C2 0.0105 (8) 0.0153 (9) 0.0120 (9) 0.0034 (7) 0.0039 (7) 0.0027 (7)
C3 0.0115 (8) 0.0142 (8) 0.0101 (8) 0.0042 (7) 0.0035 (7) 0.0041 (7)
C4 0.0146 (9) 0.0153 (8) 0.0083 (8) 0.0053 (7) 0.0036 (7) 0.0041 (7)
C5 0.0159 (9) 0.0225 (10) 0.0166 (10) 0.0039 (8) 0.0040 (7) 0.0051 (8)
C6 0.0196 (10) 0.0278 (11) 0.0169 (10) 0.0038 (8) 0.0059 (8) 0.0009 (8)
C7 0.0148 (9) 0.0226 (10) 0.0229 (11) 0.0041 (8) 0.0051 (8) −0.0062 (8)
C8 0.0110 (9) 0.0167 (9) 0.0230 (10) 0.0016 (7) 0.0039 (7) −0.0015 (8)
C9 0.0107 (8) 0.0125 (8) 0.0178 (10) 0.0037 (7) 0.0020 (7) 0.0015 (7)
C10 0.0184 (10) 0.0128 (9) 0.0330 (12) 0.0042 (8) 0.0063 (9) −0.0019 (8)
C11 0.0201 (10) 0.0122 (9) 0.0354 (12) 0.0058 (8) 0.0042 (9) 0.0065 (8)
C12 0.0131 (9) 0.0145 (9) 0.0239 (11) 0.0038 (7) 0.0020 (8) 0.0050 (8)
C13 0.0113 (8) 0.0134 (9) 0.0189 (10) 0.0029 (7) 0.0016 (7) 0.0031 (7)
C14 0.0227 (10) 0.0194 (10) 0.0282 (11) 0.0068 (8) 0.0026 (9) 0.0137 (9)
C15 0.0270 (11) 0.0248 (11) 0.0188 (10) 0.0056 (9) 0.0016 (8) 0.0105 (8)
C16 0.0262 (11) 0.0180 (10) 0.0164 (10) 0.0047 (8) 0.0016 (8) 0.0017 (8)

Geometric parameters (Å, °)

O1—C1 1.241 (2) C3—H3A 1.0000
O2—C1 1.269 (2) C5—C6 1.395 (3)
O3—C2 1.410 (2) C5—H5A 0.9500
O3—H3 0.89 (3) C6—C7 1.372 (3)
O4—C3 1.412 (2) C6—H6 0.9500
O4—H4 0.91 (3) C7—C8 1.412 (3)
O5—C4 1.311 (2) C7—H7 0.9500
O5—H5 1.00 (3) C8—C9 1.406 (3)
O6—C4 1.219 (2) C8—C10 1.437 (3)
O1W—H11 0.90 (4) C9—C13 1.434 (3)
O1W—H12 0.92 (3) C10—C11 1.350 (3)
O2W—H21 0.84 (4) C10—H10 0.9500
O2W—H22 0.87 (3) C11—C12 1.437 (3)
N1—C5 1.325 (3) C11—H11A 0.9500
N1—C9 1.360 (3) C12—C13 1.403 (3)
N1—H1 0.93 (3) C12—C14 1.407 (3)
N2—C16 1.326 (3) C14—C15 1.365 (3)
N2—C13 1.354 (2) C14—H14 0.9500
C1—C2 1.534 (2) C15—C16 1.407 (3)
C2—C3 1.535 (2) C15—H15 0.9500
C2—H2A 1.0000 C16—H16 0.9500
C3—C4 1.522 (2)
C2—O3—H3 111 (2) C5—C6—H6 120.1
C3—O4—H4 110.2 (17) C6—C7—C8 119.99 (19)
C4—O5—H5 111.6 (19) C6—C7—H7 120.0
H11—O1W—H12 101 (3) C8—C7—H7 120.0
H21—O2W—H22 109 (3) C9—C8—C7 118.09 (19)
C5—N1—C9 122.93 (18) C9—C8—C10 118.62 (19)
C5—N1—H1 117.6 (19) C7—C8—C10 123.30 (19)
C9—N1—H1 119.4 (19) N1—C9—C8 119.30 (18)
C16—N2—C13 116.48 (17) N1—C9—C13 119.82 (17)
O1—C1—O2 125.36 (18) C8—C9—C13 120.88 (18)
O1—C1—C2 119.50 (17) C11—C10—C8 121.05 (19)
O2—C1—C2 115.13 (16) C11—C10—H10 119.5
O3—C2—C1 109.60 (14) C8—C10—H10 119.5
O3—C2—C3 110.78 (15) C10—C11—C12 120.86 (19)
C1—C2—C3 109.30 (14) C10—C11—H11A 119.6
O3—C2—H2A 109.0 C12—C11—H11A 119.6
C1—C2—H2A 109.0 C13—C12—C14 117.29 (18)
C3—C2—H2A 109.0 C13—C12—C11 119.93 (19)
O4—C3—C4 109.91 (14) C14—C12—C11 122.78 (18)
O4—C3—C2 111.42 (14) N2—C13—C12 124.24 (18)
C4—C3—C2 109.66 (14) N2—C13—C9 117.11 (17)
O4—C3—H3A 108.6 C12—C13—C9 118.65 (18)
C4—C3—H3A 108.6 C15—C14—C12 118.92 (19)
C2—C3—H3A 108.6 C15—C14—H14 120.5
O6—C4—O5 124.72 (17) C12—C14—H14 120.5
O6—C4—C3 123.46 (17) C14—C15—C16 119.4 (2)
O5—C4—C3 111.81 (15) C14—C15—H15 120.3
N1—C5—C6 119.94 (19) C16—C15—H15 120.3
N1—C5—H5A 120.0 N2—C16—C15 123.7 (2)
C6—C5—H5A 120.0 N2—C16—H16 118.1
C7—C6—C5 119.74 (19) C15—C16—H16 118.1
C7—C6—H6 120.1
O1—C1—C2—O3 2.5 (2) C10—C8—C9—C13 1.3 (3)
O2—C1—C2—O3 −178.33 (15) C9—C8—C10—C11 −0.1 (3)
O1—C1—C2—C3 124.08 (18) C7—C8—C10—C11 −179.65 (19)
O2—C1—C2—C3 −56.7 (2) C8—C10—C11—C12 −0.6 (3)
O3—C2—C3—O4 62.92 (19) C10—C11—C12—C13 0.1 (3)
C1—C2—C3—O4 −57.94 (19) C10—C11—C12—C14 −179.4 (2)
O3—C2—C3—C4 −58.99 (19) C16—N2—C13—C12 −0.3 (3)
C1—C2—C3—C4 −179.86 (14) C16—N2—C13—C9 179.70 (17)
O4—C3—C4—O6 11.4 (2) C14—C12—C13—N2 0.6 (3)
C2—C3—C4—O6 134.17 (19) C11—C12—C13—N2 −178.96 (18)
O4—C3—C4—O5 −169.64 (14) C14—C12—C13—C9 −179.49 (17)
C2—C3—C4—O5 −46.8 (2) C11—C12—C13—C9 1.0 (3)
C9—N1—C5—C6 0.1 (3) N1—C9—C13—N2 −1.5 (3)
N1—C5—C6—C7 0.7 (3) C8—C9—C13—N2 178.28 (17)
C5—C6—C7—C8 −0.8 (3) N1—C9—C13—C12 178.54 (17)
C6—C7—C8—C9 0.2 (3) C8—C9—C13—C12 −1.7 (3)
C6—C7—C8—C10 179.72 (19) C13—C12—C14—C15 −0.6 (3)
C5—N1—C9—C8 −0.8 (3) C11—C12—C14—C15 178.92 (19)
C5—N1—C9—C13 179.01 (18) C12—C14—C15—C16 0.4 (3)
C7—C8—C9—N1 0.6 (3) C13—N2—C16—C15 0.1 (3)
C10—C8—C9—N1 −178.97 (17) C14—C15—C16—N2 −0.2 (3)
C7—C8—C9—C13 −179.19 (17)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O3—H3···O1wi 0.89 (3) 1.82 (3) 2.709 (2) 175 (3)
O4—H4···O2wii 0.90 (3) 1.84 (3) 2.739 (2) 172 (3)
O5—H5···O2iii 0.99 (3) 1.52 (3) 2.508 (2) 169 (3)
O1w—H12···O1 0.93 (3) 1.97 (3) 2.846 (2) 157 (3)
O1w—H11···O1iv 0.90 (4) 1.86 (4) 2.753 (2) 173 (4)
O2w—H21···O2 0.84 (4) 1.93 (4) 2.764 (2) 168 (3)
O2w—H22···O6v 0.87 (3) 1.97 (3) 2.835 (2) 176 (3)
N1—H1···O1w 0.93 (3) 1.89 (3) 2.753 (2) 153 (3)

Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+2, −z; (iii) x+1, y, z; (iv) −x, −y+2, −z+1; (v) −x+1, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5536).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  2. Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Derikvand, Z. & Olmstead, M. M. (2010). Acta Cryst. E66, o185. [DOI] [PMC free article] [PubMed]
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Wang, Z.-L., Li, M.-X., Wei, L.-H. & Wang, J.-P. (2006). Acta Cryst. E62, o2508–o2509.
  6. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015972/bt5536sup1.cif

e-67-o1306-sup1.cif (17.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015972/bt5536Isup2.hkl

e-67-o1306-Isup2.hkl (178.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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