Abstract
The title eremophilenolide, C15H22O3, is a natural compound isolated from Senecio laetus Edgew. The two cis-fused six-membered rings have chair confomations and the five-membered ring has a planar envelope conformation [maximum deviation = 0.010 (1) Å]. The β-hydroxy group participates in intermolecular O—H⋯O hydrogen bonding, forming molecular chains along the a axis.
Related literature
For related compounds extracted from Ligularia fischeri and Ligularia duciformis, see: Wang et al. (2000 ▶) and Fu et al. (2007 ▶), respectively.
Experimental
Crystal data
C15H22O3
M r = 250.33
Orthorhombic,
a = 8.0141 (16) Å
b = 9.969 (2) Å
c = 16.482 (3) Å
V = 1316.8 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.09 mm−1
T = 293 K
0.60 × 0.60 × 0.30 mm
Data collection
Rigaku R-AXIS RAPID IP diffractometer
Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.950, T max = 0.975
8965 measured reflections
1744 independent reflections
1314 reflections with I > 2σ(I)
R int = 0.061
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.107
S = 0.95
1744 reflections
168 parameters
H-atom parameters constrained
Δρmax = 0.21 e Å−3
Δρmin = −0.20 e Å−3
Data collection: RAPID-AUTO (Rigaku, 2000 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016308/ld2005sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016308/ld2005Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O3—H3⋯O1i | 0.82 | 2.18 | 2.931 (2) | 152 |
Symmetry code: (i)
.
Acknowledgments
The project was supported by the 985 Project (MUC985) Minzu University of China, and the Major Project for Young Teachers in Minzu University of China CUN10A, together with the "Programme of Introducing Talents of Discipline to Universities" (B08044), and the "Project for Scientific and Technical Achievements in Industrialization", Beijing Education Commission.
supplementary crystallographic information
Comment
Senecio laetus Edgew. grows in Guizhou province of China, and is traditionally used by the locals as medicine having effects on clearing fever and detoxifcation and relieving cough activities. As a part of our research on biological resources in the western area in China, the title compound, an eremophilenolide, was isolated. The compound was identified by NMR spectra, which were compared with the previous reports (Wang et al., 2000; Fu et al., 2007). Herewith, we present its crystal structure. The molecule consists of a fused three-ring system A/B/C(Fig.1). The rings A(C10–C6/C11)and B(C6–C3/C12–C11) are cis-fused; the hydroxy group at C12 site has the same β-orientation as the two methyl groups at C10 and C11. Rings A and B both are in chair conformations. The lactone ring has an envelope-like conformation with the atoms C1-C4 and O2 deviating from its mean plane by -0.002 (1), 0.008 (1), -0.010 (1), 0.007 (1) and -0.003 (1), respectively. The inter-molecular O—H···O hydrogen bonds apparently stabilize the crystal structure linking molecules into chains along [1 0 0].
Experimental
The air-dried whole plants of Senecio laetus (0.7 kg) were pulverized and triply extracted with MeOH (each time for 7 days) at room temperature. The extract was concentrated to give a residue (67 g), which was further separated by CC (SiO2, 200–300mesh, petroleum ether/EtOAc (20:1, 15:1, 10:1, 8:1, 5:1, 3:1, 2:1, 1:1 (v/v)) to yield 8 fractions: Fr. 1–8. Each fraction was examined by TLC and combined to afford many subfractions. Fr.5a (0.5 g) was subjected to CC (SiO2, 200–300mesh, petroleum ether/ EtOAc 10:1, 5:1 (v/v)) to provide the title compound (20 mg). 1H and 13C NMR spectral data of this compound was recorded on Bruker-AV-500 s pectrometer, using CDCl3 as solvent and Me4Si as internal standard. The stereochemistry was established by the X-ray diffraction experiment.
Refinement
The hydrogen atoms were placed in calculated positions [d(O—H) = 0.82 Å] and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C,O). The positions of methyl and hydroxy hydrogens were rotationally optimized. In the absence of any significant anomalous scatterers in the molecule, the absolute configuration has been arbitrarily assigned. Friedel pairs have been averaged.
Figures
Fig. 1.
View of the title molecule showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Crystal data
| C15H22O3 | F(000) = 544 |
| Mr = 250.33 | Dx = 1.263 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 8965 reflections |
| a = 8.0141 (16) Å | θ = 2.4–27.5° |
| b = 9.969 (2) Å | µ = 0.09 mm−1 |
| c = 16.482 (3) Å | T = 293 K |
| V = 1316.8 (5) Å3 | Block, colourless |
| Z = 4 | 0.60 × 0.60 × 0.30 mm |
Data collection
| Rigaku R-AXIS RAPID IP diffractometer | 1744 independent reflections |
| Radiation source: fine-focus sealed tube | 1314 reflections with I > 2σ(I) |
| graphite | Rint = 0.061 |
| ω scans | θmax = 27.5°, θmin = 2.4° |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = 0→10 |
| Tmin = 0.950, Tmax = 0.975 | k = 0→12 |
| 8965 measured reflections | l = 0→21 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
| wR(F2) = 0.107 | w = 1/[σ2(Fo2) + (0.0635P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.95 | (Δ/σ)max = 0.002 |
| 1744 reflections | Δρmax = 0.21 e Å−3 |
| 168 parameters | Δρmin = −0.20 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.180 (11) |
Special details
| Experimental. Since the two skeleton methyl groups in eremophilenolides are in biogenic β orientation, we assigned the relative stereochemistry of the title eremophilenolide, by reference to the structures of related eremophilenolides in Wang et al. (2000) and Fu et al. (2007) although the absolute configuration could not be reliably determined from anomalous dispersion effects with Mo radiation used in the experiment. Furthermore, the relative stereochemistry in the title compound was confirmed by NMR data. 13C NMR(125 MHz, CDCl3, δ, p.p.m.): 175.15(C1), 162.95(C3), 122.08(C2), 77.55(C4), 70.18(C12), 45.60(C11), 35.88(C5), 35.31(C6), 31.68(C10), 28.33(C7), 28.33(C9), 20.17(C8), 18.96(C14), 15.14(C15), 8.93(C13). |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.1478 (3) | 1.0934 (2) | −0.03828 (13) | 0.0498 (5) | |
| C2 | 0.3268 (3) | 1.0825 (2) | −0.05855 (13) | 0.0440 (5) | |
| C3 | 0.4112 (3) | 1.0805 (2) | 0.01139 (12) | 0.0413 (5) | |
| C4 | 0.2914 (2) | 1.0938 (3) | 0.08081 (12) | 0.0481 (6) | |
| H4 | 0.3130 | 1.1778 | 0.1099 | 0.058* | |
| C5 | 0.3057 (3) | 0.9777 (3) | 0.13851 (14) | 0.0539 (6) | |
| H5A | 0.2681 | 0.8962 | 0.1120 | 0.065* | |
| H5B | 0.2354 | 0.9933 | 0.1854 | 0.065* | |
| C6 | 0.4879 (3) | 0.9612 (3) | 0.16573 (12) | 0.0468 (5) | |
| H6 | 0.4924 | 0.8796 | 0.1989 | 0.056* | |
| C7 | 0.5409 (3) | 1.0768 (3) | 0.22055 (13) | 0.0549 (6) | |
| H7A | 0.4673 | 1.0804 | 0.2672 | 0.066* | |
| H7B | 0.5293 | 1.1606 | 0.1911 | 0.066* | |
| C8 | 0.7215 (3) | 1.0626 (3) | 0.24987 (13) | 0.0614 (7) | |
| H8A | 0.7529 | 1.1411 | 0.2811 | 0.074* | |
| H8B | 0.7314 | 0.9845 | 0.2846 | 0.074* | |
| C9 | 0.8371 (3) | 1.0479 (3) | 0.17726 (13) | 0.0550 (6) | |
| H9A | 0.9506 | 1.0361 | 0.1965 | 0.066* | |
| H9B | 0.8336 | 1.1297 | 0.1455 | 0.066* | |
| C10 | 0.7906 (3) | 0.9293 (2) | 0.12286 (13) | 0.0497 (6) | |
| H10 | 0.8622 | 0.9345 | 0.0748 | 0.060* | |
| C11 | 0.6069 (2) | 0.9379 (2) | 0.09238 (12) | 0.0427 (5) | |
| C12 | 0.5903 (2) | 1.0574 (2) | 0.03156 (12) | 0.0413 (5) | |
| H12 | 0.6343 | 1.1384 | 0.0576 | 0.050* | |
| C13 | 0.3809 (3) | 1.0747 (3) | −0.14545 (12) | 0.0561 (6) | |
| H13A | 0.4807 | 1.1265 | −0.1528 | 0.084* | |
| H13B | 0.2943 | 1.1096 | −0.1797 | 0.084* | |
| H13C | 0.4024 | 0.9829 | −0.1596 | 0.084* | |
| C14 | 0.5597 (3) | 0.8095 (2) | 0.04675 (15) | 0.0633 (7) | |
| H14A | 0.6471 | 0.7864 | 0.0095 | 0.095* | |
| H14B | 0.4578 | 0.8239 | 0.0173 | 0.095* | |
| H14C | 0.5444 | 0.7377 | 0.0848 | 0.095* | |
| C15 | 0.8317 (4) | 0.7963 (3) | 0.16557 (18) | 0.0727 (8) | |
| H15A | 0.9469 | 0.7961 | 0.1815 | 0.109* | |
| H15B | 0.8113 | 0.7230 | 0.1291 | 0.109* | |
| H15C | 0.7625 | 0.7867 | 0.2128 | 0.109* | |
| O1 | 0.0277 (2) | 1.09467 (19) | −0.08281 (10) | 0.0629 (5) | |
| O2 | 0.12877 (17) | 1.09976 (19) | 0.04302 (9) | 0.0568 (5) | |
| O3 | 0.67936 (19) | 1.0359 (2) | −0.04189 (9) | 0.0647 (6) | |
| H3 | 0.7767 | 1.0594 | −0.0360 | 0.097* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0432 (11) | 0.0585 (13) | 0.0476 (11) | −0.0017 (11) | −0.0011 (10) | 0.0074 (12) |
| C2 | 0.0401 (10) | 0.0499 (12) | 0.0420 (10) | −0.0017 (10) | −0.0004 (9) | 0.0037 (10) |
| C3 | 0.0377 (9) | 0.0479 (11) | 0.0383 (9) | −0.0040 (10) | 0.0045 (9) | 0.0014 (9) |
| C4 | 0.0310 (9) | 0.0733 (15) | 0.0399 (10) | 0.0022 (11) | 0.0015 (9) | 0.0018 (11) |
| C5 | 0.0352 (10) | 0.0824 (17) | 0.0441 (11) | −0.0036 (12) | 0.0082 (9) | 0.0135 (12) |
| C6 | 0.0361 (10) | 0.0641 (13) | 0.0403 (10) | −0.0009 (10) | 0.0069 (9) | 0.0113 (10) |
| C7 | 0.0448 (11) | 0.0820 (16) | 0.0378 (10) | 0.0094 (13) | 0.0056 (10) | −0.0024 (11) |
| C8 | 0.0484 (12) | 0.0904 (19) | 0.0455 (11) | −0.0002 (14) | −0.0053 (11) | −0.0075 (13) |
| C9 | 0.0384 (11) | 0.0781 (16) | 0.0486 (11) | −0.0010 (12) | −0.0044 (11) | −0.0014 (12) |
| C10 | 0.0381 (11) | 0.0629 (14) | 0.0481 (11) | 0.0058 (11) | 0.0048 (10) | 0.0028 (11) |
| C11 | 0.0356 (10) | 0.0507 (12) | 0.0418 (10) | −0.0012 (9) | 0.0024 (9) | −0.0009 (9) |
| C12 | 0.0327 (9) | 0.0556 (12) | 0.0357 (9) | −0.0045 (9) | 0.0031 (8) | 0.0033 (10) |
| C13 | 0.0574 (14) | 0.0724 (15) | 0.0386 (10) | −0.0003 (13) | 0.0000 (11) | 0.0016 (11) |
| C14 | 0.0605 (14) | 0.0576 (13) | 0.0717 (15) | −0.0026 (12) | −0.0018 (14) | −0.0084 (13) |
| C15 | 0.0631 (16) | 0.0726 (16) | 0.0825 (17) | 0.0173 (14) | −0.0060 (16) | 0.0115 (15) |
| O1 | 0.0436 (8) | 0.0838 (12) | 0.0612 (9) | −0.0014 (9) | −0.0117 (8) | 0.0080 (9) |
| O2 | 0.0333 (7) | 0.0884 (12) | 0.0488 (8) | 0.0062 (9) | 0.0030 (7) | 0.0099 (9) |
| O3 | 0.0375 (8) | 0.1178 (16) | 0.0388 (7) | −0.0027 (10) | 0.0079 (7) | −0.0008 (10) |
Geometric parameters (Å, °)
| C1—O1 | 1.210 (3) | C8—H8B | 0.9700 |
| C1—O2 | 1.350 (3) | C9—C10 | 1.530 (3) |
| C1—C2 | 1.477 (3) | C9—H9A | 0.9700 |
| C2—C3 | 1.337 (3) | C9—H9B | 0.9700 |
| C2—C13 | 1.499 (3) | C10—C15 | 1.537 (3) |
| C3—C12 | 1.492 (3) | C10—C11 | 1.557 (3) |
| C3—C4 | 1.500 (3) | C10—H10 | 0.9800 |
| C4—O2 | 1.445 (2) | C11—C14 | 1.532 (3) |
| C4—C5 | 1.502 (3) | C11—C12 | 1.563 (3) |
| C4—H4 | 0.9800 | C12—O3 | 1.421 (2) |
| C5—C6 | 1.536 (3) | C12—H12 | 0.9800 |
| C5—H5A | 0.9700 | C13—H13A | 0.9600 |
| C5—H5B | 0.9700 | C13—H13B | 0.9600 |
| C6—C7 | 1.525 (4) | C13—H13C | 0.9600 |
| C6—C11 | 1.557 (3) | C14—H14A | 0.9600 |
| C6—H6 | 0.9800 | C14—H14B | 0.9600 |
| C7—C8 | 1.532 (3) | C14—H14C | 0.9600 |
| C7—H7A | 0.9700 | C15—H15A | 0.9600 |
| C7—H7B | 0.9700 | C15—H15B | 0.9600 |
| C8—C9 | 1.521 (3) | C15—H15C | 0.9600 |
| C8—H8A | 0.9700 | O3—H3 | 0.8200 |
| O1—C1—O2 | 120.8 (2) | C8—C9—H9B | 109.0 |
| O1—C1—C2 | 129.5 (2) | C10—C9—H9B | 109.0 |
| O2—C1—C2 | 109.71 (19) | H9A—C9—H9B | 107.8 |
| C3—C2—C1 | 107.30 (19) | C9—C10—C15 | 110.24 (19) |
| C3—C2—C13 | 132.62 (19) | C9—C10—C11 | 112.15 (19) |
| C1—C2—C13 | 120.07 (19) | C15—C10—C11 | 113.4 (2) |
| C2—C3—C12 | 132.96 (19) | C9—C10—H10 | 106.9 |
| C2—C3—C4 | 109.45 (18) | C15—C10—H10 | 106.9 |
| C12—C3—C4 | 117.38 (17) | C11—C10—H10 | 106.9 |
| O2—C4—C3 | 104.59 (16) | C14—C11—C6 | 110.74 (18) |
| O2—C4—C5 | 111.93 (18) | C14—C11—C10 | 110.26 (19) |
| C3—C4—C5 | 111.4 (2) | C6—C11—C10 | 109.67 (16) |
| O2—C4—H4 | 109.6 | C14—C11—C12 | 107.52 (16) |
| C3—C4—H4 | 109.6 | C6—C11—C12 | 109.39 (17) |
| C5—C4—H4 | 109.6 | C10—C11—C12 | 109.22 (17) |
| C4—C5—C6 | 109.90 (18) | O3—C12—C3 | 108.46 (17) |
| C4—C5—H5A | 109.7 | O3—C12—C11 | 112.88 (18) |
| C6—C5—H5A | 109.7 | C3—C12—C11 | 110.02 (16) |
| C4—C5—H5B | 109.7 | O3—C12—H12 | 108.5 |
| C6—C5—H5B | 109.7 | C3—C12—H12 | 108.5 |
| H5A—C5—H5B | 108.2 | C11—C12—H12 | 108.5 |
| C7—C6—C5 | 110.9 (2) | C2—C13—H13A | 109.5 |
| C7—C6—C11 | 113.71 (18) | C2—C13—H13B | 109.5 |
| C5—C6—C11 | 111.80 (17) | H13A—C13—H13B | 109.5 |
| C7—C6—H6 | 106.7 | C2—C13—H13C | 109.5 |
| C5—C6—H6 | 106.7 | H13A—C13—H13C | 109.5 |
| C11—C6—H6 | 106.7 | H13B—C13—H13C | 109.5 |
| C6—C7—C8 | 112.3 (2) | C11—C14—H14A | 109.5 |
| C6—C7—H7A | 109.1 | C11—C14—H14B | 109.5 |
| C8—C7—H7A | 109.1 | H14A—C14—H14B | 109.5 |
| C6—C7—H7B | 109.1 | C11—C14—H14C | 109.5 |
| C8—C7—H7B | 109.1 | H14A—C14—H14C | 109.5 |
| H7A—C7—H7B | 107.9 | H14B—C14—H14C | 109.5 |
| C9—C8—C7 | 109.66 (18) | C10—C15—H15A | 109.5 |
| C9—C8—H8A | 109.7 | C10—C15—H15B | 109.5 |
| C7—C8—H8A | 109.7 | H15A—C15—H15B | 109.5 |
| C9—C8—H8B | 109.7 | C10—C15—H15C | 109.5 |
| C7—C8—H8B | 109.7 | H15A—C15—H15C | 109.5 |
| H8A—C8—H8B | 108.2 | H15B—C15—H15C | 109.5 |
| C8—C9—C10 | 112.8 (2) | C1—O2—C4 | 108.92 (16) |
| C8—C9—H9A | 109.0 | C12—O3—H3 | 109.5 |
| C10—C9—H9A | 109.0 | ||
| O1—C1—C2—C3 | −177.7 (3) | C7—C6—C11—C10 | 50.5 (2) |
| O2—C1—C2—C3 | 1.0 (3) | C5—C6—C11—C10 | 177.0 (2) |
| O1—C1—C2—C13 | 1.6 (4) | C7—C6—C11—C12 | −69.2 (2) |
| O2—C1—C2—C13 | −179.7 (2) | C5—C6—C11—C12 | 57.3 (2) |
| C1—C2—C3—C12 | 172.8 (2) | C9—C10—C11—C14 | −173.30 (18) |
| C13—C2—C3—C12 | −6.4 (4) | C15—C10—C11—C14 | −47.6 (3) |
| C1—C2—C3—C4 | −1.6 (3) | C9—C10—C11—C6 | −51.1 (2) |
| C13—C2—C3—C4 | 179.2 (3) | C15—C10—C11—C6 | 74.6 (3) |
| C2—C3—C4—O2 | 1.6 (3) | C9—C10—C11—C12 | 68.8 (2) |
| C12—C3—C4—O2 | −173.75 (18) | C15—C10—C11—C12 | −165.52 (19) |
| C2—C3—C4—C5 | 122.8 (2) | C2—C3—C12—O3 | 0.9 (3) |
| C12—C3—C4—C5 | −52.6 (3) | C4—C3—C12—O3 | 174.9 (2) |
| O2—C4—C5—C6 | 170.32 (18) | C2—C3—C12—C11 | −123.0 (3) |
| C3—C4—C5—C6 | 53.6 (3) | C4—C3—C12—C11 | 51.0 (3) |
| C4—C5—C6—C7 | 69.5 (2) | C14—C11—C12—O3 | −52.3 (2) |
| C4—C5—C6—C11 | −58.5 (3) | C6—C11—C12—O3 | −172.67 (16) |
| C5—C6—C7—C8 | 179.21 (18) | C10—C11—C12—O3 | 67.3 (2) |
| C11—C6—C7—C8 | −53.8 (3) | C14—C11—C12—C3 | 69.0 (2) |
| C6—C7—C8—C9 | 55.2 (3) | C6—C11—C12—C3 | −51.4 (2) |
| C7—C8—C9—C10 | −56.9 (3) | C10—C11—C12—C3 | −171.41 (18) |
| C8—C9—C10—C15 | −71.1 (3) | O1—C1—O2—C4 | 178.9 (2) |
| C8—C9—C10—C11 | 56.3 (3) | C2—C1—O2—C4 | 0.1 (3) |
| C7—C6—C11—C14 | 172.43 (19) | C3—C4—O2—C1 | −1.0 (3) |
| C5—C6—C11—C14 | −61.0 (3) | C5—C4—O2—C1 | −121.8 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O3—H3···O1i | 0.82 | 2.18 | 2.931 (2) | 152 |
Symmetry codes: (i) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LD2005).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016308/ld2005sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016308/ld2005Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

