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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 7;67(Pt 6):o1338. doi: 10.1107/S1600536811014693

2-[4-(Methyl­sulfan­yl)phen­yl]naphtho[1,8-de][1,3,2]diaza­borinane

Cathryn A Slabber a, Matthew P Akerman a, Ross S Robinson a,*
PMCID: PMC3120534  PMID: 21754734

Abstract

The title compound, C17H15BN2S, is one member in a series of diaza­borinanes featuring substitution at the 1-, 2- and 3-positions in the nitro­gen–boron heterocycle. The dihedral angle between the mean planes of the naphthalene and phenyl ring systems is 19.86 (6)°. In the crystal structure, two C—H⋯π inter­actions link the mol­ecules into sheets which lie parallel to the bc plane. There is a π–π inter­action between each pair of centrosymmetrically related sheets [centroid–centroid distance = 3.5922 (8) Å].

Related literature

For the synthesis of the title compound, see: Slabber (2011 ▶). For the structures of related compounds and luminescence studies, see: Weber et al. (2009 ▶).graphic file with name e-67-o1338-scheme1.jpg

Experimental

Crystal data

  • C17H15BN2S

  • M r = 290.18

  • Monoclinic, Inline graphic

  • a = 13.7594 (6) Å

  • b = 9.0545 (3) Å

  • c = 12.7830 (5) Å

  • β = 113.411 (5)°

  • V = 1461.46 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.21 mm−1

  • T = 296 K

  • 0.40 × 0.40 × 0.30 mm

Data collection

  • Oxford Diffraction Xcalibur 2 CCD diffractometer

  • Absorption correction: multi-scan CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.919, T max = 0.939

  • 14782 measured reflections

  • 4709 independent reflections

  • 2774 reflections with I > 2σ(I)

  • R int = 0.033

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.149

  • S = 0.98

  • 4709 reflections

  • 199 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.42 e Å−3

  • Δρmin = −0.49 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON, SHELXL97 and WinGX (Farrugia, 1999 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014693/lw2059sup1.cif

e-67-o1338-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014693/lw2059Isup2.hkl

e-67-o1338-Isup2.hkl (226KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg2 is the centroid of the C5–C9 ring and Cg3 is the centroid of the C11–C16 ring.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C2—H2⋯Cg3i 0.93 2.75 3.5178 (18) 141
C12—H12⋯Cg2ii 0.93 2.82 3.6122 (17) 144

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank Professor O. Q. Munro and Mr C. R. Wilson (University of KwaZulu-Natal) for the data collection and structure refinement.

supplementary crystallographic information

Comment

C17H15BN2S, is one compound in a series of diazaborinanes featuring substitution at the 1, 2 and 3 positions in the nitrogen–boron heterocycle. The dihedral angle between the mean planes of the naphthalene and the phenyl ring systems is 19.86 (6)°. The atoms N1, B1 and N2 lie at 0.053 (2) Å, 0.084 (2) Å and 0.017 (2) Å respectively above the mean plane of the naphthalene ring.

The H atoms attached to the N atoms are unavailable for hydrogen-bonding due to their positions in the molecule.

The supramolecular structure is determined by the C2—H2···Cg3(x, 0.5 - y, -0.5 + z) and the C12—H12···Cg2(x, -0.5 - y, 0.5 + z), where Cg3 is the centroid of the phenyl ring containing C11 and Cg2 is the centroid of the phenyl ring containing C8. These link the molecules into sheets which lie in the bc plane.

There is a π–π interaction between the centrosymmetrically related phenyl rings, containing C8, at (x, y, z) and (1 - x, -y, -z). The centroid-to-centroid distance is 3.5922 (8) Å, with a perpendicular spacing between the planes of 3.3883 (6) Å and a slippage of 1.193 Å.

Experimental

To a solution of 1,8-diaminonaphthalene in toluene (4.11 mmol in 50 ml, 0.82 M) (Slabber, 2011) was added the 4-(methylthio)phenylboronic acid (4.11 mmol) in one portion. The round-bottomed flask was equipped with a Dean and Stark trap, and the solution was stirred and heated at 110°C for 3 h. The solvent was removed in vacuo and column chromatography of the crude solid on silica eluting with CH2Cl2 yielded yellow crystalline material in a yield of 65%. Crystals suitable for X-ray diffraction analysis were grown from CH2Cl2 at room temperature.

Refinement

H atoms were treated as riding atoms with C—H(aromatic), 0.93 Å, with Uiso = 1.2Ueq(C) and C—H3 (methyl), 0.96Å, with Uiso = 1.5Ueq(C). H atoms attached to N atoms were located on a difference map, and allowed to refine.

Figures

Fig. 1.

Fig. 1.

A view of the molecule showing the numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

C17H15BN2S F(000) = 608
Mr = 290.18 Dx = 1.319 Mg m−3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 5105 reflections
a = 13.7594 (6) Å θ = 2.8–32.0°
b = 9.0545 (3) Å µ = 0.21 mm−1
c = 12.7830 (5) Å T = 296 K
β = 113.411 (5)° Prismatic, yellow
V = 1461.46 (10) Å3 0.40 × 0.40 × 0.30 mm
Z = 4

Data collection

Oxford Diffraction Xcalibur 2 CCD diffractometer 4709 independent reflections
Radiation source: fine-focus sealed tube 2774 reflections with I > 2σ(I)
graphite Rint = 0.033
Detector resolution: 8.4190 pixels mm-1 θmax = 32.1°, θmin = 2.8°
ω scans h = −19→20
Absorption correction: multi-scan CrysAlis RED; Oxford Diffraction, 2008) k = −12→12
Tmin = 0.919, Tmax = 0.939 l = −16→18
14782 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149 H atoms treated by a mixture of independent and constrained refinement
S = 0.98 w = 1/[σ2(Fo2) + (0.0834P)2] where P = (Fo2 + 2Fc2)/3
4709 reflections (Δ/σ)max < 0.001
199 parameters Δρmax = 0.42 e Å−3
0 restraints Δρmin = −0.48 e Å−3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.06634 (4) 0.07477 (6) 0.41647 (4) 0.07016 (19)
N1 0.23358 (10) 0.04869 (14) −0.03349 (11) 0.0461 (3)
H1A 0.1893 (14) 0.1126 (19) −0.0463 (14) 0.055*
N2 0.34252 (10) −0.14141 (14) 0.08645 (10) 0.0444 (3)
H2A 0.3614 (13) −0.1995 (19) 0.1435 (14) 0.053*
C1 0.28153 (11) 0.03270 (15) −0.11059 (12) 0.0402 (3)
C2 0.25289 (13) 0.11684 (18) −0.20761 (13) 0.0509 (4)
H2 0.1989 0.1861 −0.2242 0.061*
C3 0.30433 (14) 0.09910 (17) −0.28158 (13) 0.0534 (4)
H3 0.2833 0.1558 −0.3476 0.064*
C4 0.38422 (13) 0.00088 (17) −0.25892 (13) 0.0485 (4)
H4 0.4181 −0.0077 −0.3087 0.058*
C5 0.49989 (12) −0.19240 (16) −0.13262 (12) 0.0447 (3)
H5 0.5358 −0.2034 −0.1803 0.054*
C6 0.52808 (12) −0.27612 (16) −0.03688 (12) 0.0461 (3)
H6 0.5829 −0.3440 −0.0203 0.055*
C7 0.47646 (12) −0.26238 (16) 0.03701 (12) 0.0441 (3)
H7 0.4970 −0.3210 0.1020 0.053*
C8 0.39514 (11) −0.16235 (14) 0.01405 (11) 0.0382 (3)
C9 0.36357 (11) −0.07342 (14) −0.08561 (11) 0.0366 (3)
C10 0.41675 (11) −0.08885 (14) −0.16042 (11) 0.0393 (3)
C11 0.21019 (11) −0.00769 (16) 0.15450 (12) 0.0417 (3)
C12 0.25773 (12) −0.05279 (17) 0.26845 (13) 0.0485 (4)
H12 0.3227 −0.1011 0.2935 0.058*
C13 0.21171 (13) −0.02803 (18) 0.34438 (14) 0.0505 (4)
H13 0.2462 −0.0587 0.4196 0.061*
C14 0.11401 (11) 0.04254 (16) 0.31007 (13) 0.0444 (3)
C15 0.06397 (11) 0.08679 (16) 0.19740 (13) 0.0454 (3)
H15 −0.0018 0.1327 0.1724 0.054*
C16 0.11204 (11) 0.06258 (16) 0.12205 (13) 0.0448 (3)
H16 0.0777 0.0943 0.0470 0.054*
C17 −0.05682 (14) 0.1664 (2) 0.34505 (16) 0.0674 (5)
H17A −0.0453 0.2571 0.3128 0.101*
H17B −0.0882 0.1875 0.3984 0.101*
H17C −0.1034 0.1042 0.2854 0.101*
B1 0.26262 (13) −0.03403 (18) 0.06810 (14) 0.0412 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0687 (3) 0.0942 (4) 0.0586 (3) 0.0245 (3) 0.0370 (2) 0.0095 (2)
N1 0.0447 (7) 0.0488 (7) 0.0469 (7) 0.0105 (5) 0.0205 (6) 0.0060 (6)
N2 0.0530 (7) 0.0436 (7) 0.0412 (7) 0.0061 (5) 0.0237 (6) 0.0095 (5)
C1 0.0423 (7) 0.0380 (7) 0.0377 (7) −0.0020 (6) 0.0133 (6) −0.0009 (5)
C2 0.0560 (9) 0.0479 (9) 0.0456 (8) 0.0103 (7) 0.0167 (7) 0.0085 (7)
C3 0.0677 (11) 0.0499 (9) 0.0391 (8) 0.0042 (8) 0.0174 (7) 0.0095 (6)
C4 0.0664 (10) 0.0447 (8) 0.0380 (8) −0.0024 (7) 0.0245 (7) −0.0008 (6)
C5 0.0523 (9) 0.0437 (8) 0.0417 (8) −0.0027 (6) 0.0226 (7) −0.0071 (6)
C6 0.0487 (8) 0.0412 (8) 0.0477 (8) 0.0056 (6) 0.0182 (7) −0.0043 (6)
C7 0.0527 (9) 0.0390 (7) 0.0399 (7) 0.0046 (6) 0.0177 (7) 0.0038 (6)
C8 0.0430 (7) 0.0346 (7) 0.0369 (7) −0.0035 (5) 0.0158 (6) −0.0015 (5)
C9 0.0405 (7) 0.0334 (7) 0.0331 (6) −0.0058 (5) 0.0115 (5) −0.0041 (5)
C10 0.0465 (8) 0.0356 (7) 0.0356 (7) −0.0073 (6) 0.0163 (6) −0.0066 (5)
C11 0.0407 (7) 0.0415 (7) 0.0438 (8) −0.0018 (6) 0.0179 (6) −0.0002 (6)
C12 0.0443 (8) 0.0541 (9) 0.0484 (8) 0.0107 (7) 0.0196 (7) 0.0055 (7)
C13 0.0499 (9) 0.0579 (9) 0.0445 (8) 0.0091 (7) 0.0196 (7) 0.0068 (7)
C14 0.0447 (8) 0.0415 (8) 0.0500 (8) −0.0011 (6) 0.0220 (7) −0.0008 (6)
C15 0.0368 (7) 0.0488 (8) 0.0488 (8) 0.0026 (6) 0.0152 (6) 0.0010 (6)
C16 0.0409 (7) 0.0499 (8) 0.0407 (8) −0.0019 (6) 0.0132 (6) 0.0012 (6)
C17 0.0618 (11) 0.0654 (11) 0.0844 (13) 0.0100 (9) 0.0391 (10) −0.0003 (10)
B1 0.0405 (8) 0.0420 (9) 0.0414 (8) −0.0037 (6) 0.0166 (7) −0.0013 (6)

Geometric parameters (Å, °)

S1—C14 1.7534 (15) C6—H6 0.9300
S1—C17 1.7789 (18) C7—C8 1.3775 (19)
N1—C1 1.3944 (18) C7—H7 0.9300
N1—B1 1.412 (2) C8—C9 1.4213 (18)
N1—H1A 0.808 (17) C9—C10 1.4231 (18)
N2—C8 1.3961 (17) C11—C16 1.398 (2)
N2—B1 1.416 (2) C11—C12 1.400 (2)
N2—H2A 0.852 (17) C11—B1 1.559 (2)
C1—C2 1.373 (2) C12—C13 1.372 (2)
C1—C9 1.4188 (19) C12—H12 0.9300
C2—C3 1.398 (2) C13—C14 1.393 (2)
C2—H2 0.9300 C13—H13 0.9300
C3—C4 1.353 (2) C14—C15 1.386 (2)
C3—H3 0.9300 C15—C16 1.385 (2)
C4—C10 1.414 (2) C15—H15 0.9300
C4—H4 0.9300 C16—H16 0.9300
C5—C6 1.359 (2) C17—H17A 0.9600
C5—C10 1.411 (2) C17—H17B 0.9600
C5—H5 0.9300 C17—H17C 0.9600
C6—C7 1.3948 (19)
C14—S1—C17 104.67 (8) C1—C9—C10 119.39 (12)
C1—N1—B1 123.67 (13) C8—C9—C10 119.41 (12)
C1—N1—H1A 117.5 (12) C5—C10—C4 122.98 (13)
B1—N1—H1A 118.8 (12) C5—C10—C9 118.55 (12)
C8—N2—B1 123.82 (12) C4—C10—C9 118.48 (13)
C8—N2—H2A 115.0 (11) C16—C11—C12 116.00 (13)
B1—N2—H2A 121.2 (11) C16—C11—B1 121.58 (13)
C2—C1—N1 122.28 (13) C12—C11—B1 122.42 (13)
C2—C1—C9 119.75 (13) C13—C12—C11 122.17 (14)
N1—C1—C9 117.96 (12) C13—C12—H12 118.9
C1—C2—C3 120.43 (14) C11—C12—H12 118.9
C1—C2—H2 119.8 C12—C13—C14 120.76 (14)
C3—C2—H2 119.8 C12—C13—H13 119.6
C4—C3—C2 121.17 (14) C14—C13—H13 119.6
C4—C3—H3 119.4 C15—C14—C13 118.60 (13)
C2—C3—H3 119.4 C15—C14—S1 124.99 (11)
C3—C4—C10 120.75 (14) C13—C14—S1 116.35 (12)
C3—C4—H4 119.6 C16—C15—C14 119.96 (13)
C10—C4—H4 119.6 C16—C15—H15 120.0
C6—C5—C10 120.69 (13) C14—C15—H15 120.0
C6—C5—H5 119.7 C15—C16—C11 122.50 (14)
C10—C5—H5 119.7 C15—C16—H16 118.7
C5—C6—C7 121.36 (14) C11—C16—H16 118.7
C5—C6—H6 119.3 S1—C17—H17A 109.5
C7—C6—H6 119.3 S1—C17—H17B 109.5
C8—C7—C6 120.23 (13) H17A—C17—H17B 109.5
C8—C7—H7 119.9 S1—C17—H17C 109.5
C6—C7—H7 119.9 H17A—C17—H17C 109.5
C7—C8—N2 122.63 (12) H17B—C17—H17C 109.5
C7—C8—C9 119.77 (12) N1—B1—N2 115.72 (13)
N2—C8—C9 117.58 (12) N1—B1—C11 121.92 (13)
C1—C9—C8 121.19 (12) N2—B1—C11 122.36 (13)
B1—N1—C1—C2 −178.71 (15) C1—C9—C10—C5 178.43 (12)
B1—N1—C1—C9 0.4 (2) C8—C9—C10—C5 −0.22 (18)
N1—C1—C2—C3 178.83 (14) C1—C9—C10—C4 −1.23 (19)
C9—C1—C2—C3 −0.3 (2) C8—C9—C10—C4 −179.88 (12)
C1—C2—C3—C4 −1.0 (2) C16—C11—C12—C13 −0.8 (2)
C2—C3—C4—C10 1.2 (2) B1—C11—C12—C13 179.34 (14)
C10—C5—C6—C7 −0.2 (2) C11—C12—C13—C14 0.7 (2)
C5—C6—C7—C8 −0.1 (2) C12—C13—C14—C15 0.2 (2)
C6—C7—C8—N2 −178.36 (13) C12—C13—C14—S1 −177.34 (12)
C6—C7—C8—C9 0.3 (2) C17—S1—C14—C15 2.01 (16)
B1—N2—C8—C7 176.50 (14) C17—S1—C14—C13 179.41 (13)
B1—N2—C8—C9 −2.2 (2) C13—C14—C15—C16 −1.0 (2)
C2—C1—C9—C8 −179.98 (13) S1—C14—C15—C16 176.34 (11)
N1—C1—C9—C8 0.86 (19) C14—C15—C16—C11 0.9 (2)
C2—C1—C9—C10 1.4 (2) C12—C11—C16—C15 0.0 (2)
N1—C1—C9—C10 −177.77 (12) B1—C11—C16—C15 179.86 (13)
C7—C8—C9—C1 −178.74 (12) C1—N1—B1—N2 −2.4 (2)
N2—C8—C9—C1 −0.03 (19) C1—N1—B1—C11 177.28 (13)
C7—C8—C9—C10 −0.11 (19) C8—N2—B1—N1 3.3 (2)
N2—C8—C9—C10 178.60 (12) C8—N2—B1—C11 −176.37 (13)
C6—C5—C10—C4 −179.96 (14) C16—C11—B1—N1 20.3 (2)
C6—C5—C10—C9 0.4 (2) C12—C11—B1—N1 −159.84 (15)
C3—C4—C10—C5 −179.68 (14) C16—C11—B1—N2 −160.00 (14)
C3—C4—C10—C9 0.0 (2) C12—C11—B1—N2 19.8 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2···Cg3i 0.93 2.75 3.5178 (18) 141
C12—H12···Cg2ii 0.93 2.82 3.6122 (17) 144

Symmetry codes: (i) x, −y−1/2, z−3/2; (ii) x, −y−3/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LW2059).

References

  1. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  2. Oxford Diffraction (2008). CrysAlis CCD and CrysAlis RED Oxford Diffraction Ltd, Abingdon, Oxfordshire, England.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Slabber, C. A. (2011). Ultrastabilized Boranes: A Study into the Synthesis, Structure and Reactivities of Heterosubstituted Organoboranes MSc Thesis, University of KwaZulu Natal, South Africa.
  5. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  6. Weber, L., Werner, V., Fox, M. A., Marder, R. T. S., Schwedler, S., Brockhinke, A., Stammler, H.-G. & Neumann, B. (2009). Dalton Trans. pp. 1339–1351. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014693/lw2059sup1.cif

e-67-o1338-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014693/lw2059Isup2.hkl

e-67-o1338-Isup2.hkl (226KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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