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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 28;67(Pt 6):o1535. doi: 10.1107/S1600536811019532

2′-Chloro-4-meth­oxy-3-nitro­benzil

G Nithya a, B Thanuja a, G Chakkaravarthi b,*, Charles C Kanagam c
PMCID: PMC3120549  PMID: 21754895

Abstract

In the title compound, C15H10ClNO5, the dihedral angle between the aromatic rings is 87.99 (5)°. The O—C—C—O torsion angle between the two carbonyl units is −119.03 (16)°. The crystal structure is stabilized by a weak intermolecular C—H⋯O hydrogen bond.

Related literature

For the biological activity of benzil derivatives, see: Mousset et al. (2008); Mahabusarakam et al. (2004); Ganapaty et al. (2009). For bond-length data and related structures, see: Allen et al. (1987); Fun & Kia (2008a ,b ).graphic file with name e-67-o1535-scheme1.jpg

Experimental

Crystal data

  • C15H10ClNO5

  • M r = 319.69

  • Triclinic, Inline graphic

  • a = 7.8559 (2) Å

  • b = 8.1003 (2) Å

  • c = 12.4961 (3) Å

  • α = 74.893 (1)°

  • β = 74.809 (2)°

  • γ = 68.593 (1)°

  • V = 702.32 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 295 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Bruker Kappa APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.917, T max = 0.943

  • 17487 measured reflections

  • 3937 independent reflections

  • 3150 reflections with I > 2σ(I)

  • R int = 0.021

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.128

  • S = 1.06

  • 3937 reflections

  • 200 parameters

  • H-atom parameters constrained

  • Δρmax = 0.48 e Å−3

  • Δρmin = −0.41 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019532/bt5555sup1.cif

e-67-o1535-sup1.cif (16.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019532/bt5555Isup2.hkl

e-67-o1535-Isup2.hkl (189KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019532/bt5555Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3⋯O2i 0.93 2.53 3.318 (2) 143

Symmetry code: (i) Inline graphic.

Acknowledgments

GC acknowledges Vels University for providing laboratory facilities as well the opportunity to do the research work and members of the Chemistry Department of SRM Valliammai Engineering College for useful discussions.

supplementary crystallographic information

Comment

Benzil derivates exhibit radical scavenging, antibacterial and hypertensive (Mahabusarakam et al., 2004), antiprotozoal (Ganapaty et al., 2009), antiproliferative and antimitotic (Mousset et al., 2008) activities.

The geometric parameters of the title compound (Fig. 1) agree with those in the reported structures (Fun & Kia, 2008a,b) and the literature values (Allen et al., 1987). The dihedral angle between the two rings is 87.99 (5)°. The mean plane of methoxy and nitro groups are twisted at an angle of 4.95 (8) and 32.19 (6)°, respectively, with the benzene ring (C9—C14).

The dicarbonyl unit has s-trans conformation as can be indicated by the torsion angles of O1–C7–C6–C1, and O2–C8–C9–C14 being -145.86 (16) and -171.77 (15)°, respectively. This conformation is authenticated by the torsion angle of O1–C7–C8–O2, being -119.03 (16)°.

The crystal structure exhibit weak C—H···O (Table 1 & Fig. 2) and π···π [Cg1···Cg1 (-x,1 - y,2 - z) distance of 3.8904 (9)Å and Cg2···Cg2 (1 - x,2 - y,1 - z) distance of 4.2891 (9) Å; Cg1 and Cg2 are the centroids of the rings (C1—C6) and (C9—C14), respectively] interactions.

Experimental

The title compound was synthesized in two steps. The first step involves the benzoin condensation. 4 g of KCN was dissolved in 75cc of water in a one litre flask. To this was added 6.8 g (0.05 mole) of anisaldehyde, 7 g (0.05mole) of 2-chloro benzaldeyde and 75 cc of 95% ethanol. The mixture formed a solution at the boiling temperature and was refluxed for one and half hours. Steam was then passed through the solution until all the alcohol and nearly all the unchanged aldehyde were removed. The condensed water was decanted from the product and later set away to crystallize. The product was then pressed as free as possible from oily material on a suction funnel and washed with cold alcohol. In this way about 9 g of crude product was obtained. The crude mixture was dissolved in hot alcohol and allowed to crystallize slowly. The 2'chloro-4-methoxy benzoin crystallizes out as colourless, hexagonal crystals. From the benzoin about 1 gram was taken and treated with concentrated nitric acid by heating in a water bath inside a fume cupboard for about 3 h until it is free from the smell of nitrogen dioxide. It is then cooled and crystallized using hot ethanol. The obtained benzil is recrystallized using chloroform / acetone in the ratio 3:1. Pure crystals of benzil separates out. The yield is about 70–80%.

Refinement

H atoms were positioned geometrically and refined using riding model with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic C—H and C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for CH3.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.

Crystal data

C15H10ClNO5 Z = 2
Mr = 319.69 F(000) = 328
Triclinic, P1 Dx = 1.512 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.8559 (2) Å Cell parameters from 8570 reflections
b = 8.1003 (2) Å θ = 2.7–29.0°
c = 12.4961 (3) Å µ = 0.30 mm1
α = 74.893 (1)° T = 295 K
β = 74.809 (2)° Block, colourless
γ = 68.593 (1)° 0.30 × 0.20 × 0.20 mm
V = 702.32 (3) Å3

Data collection

Bruker Kappa APEXII diffractometer 3937 independent reflections
Radiation source: fine-focus sealed tube 3150 reflections with I > 2σ(I)
graphite Rint = 0.021
ω and φ scans θmax = 29.6°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −10→10
Tmin = 0.917, Tmax = 0.943 k = −11→10
17487 measured reflections l = −12→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0635P)2 + 0.160P] where P = (Fo2 + 2Fc2)/3
3937 reflections (Δ/σ)max < 0.001
200 parameters Δρmax = 0.48 e Å3
0 restraints Δρmin = −0.41 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.15981 (6) 0.62735 (6) 0.72481 (4) 0.06164 (15)
O1 0.66183 (15) 0.31713 (16) 0.83551 (11) 0.0568 (3)
O2 0.39794 (18) 0.70912 (17) 0.88704 (10) 0.0583 (3)
O3 0.82025 (17) 0.96590 (15) 0.40294 (9) 0.0523 (3)
O4 0.5354 (2) 1.23772 (19) 0.64274 (14) 0.0786 (5)
O5 0.7972 (2) 1.19529 (19) 0.52797 (13) 0.0714 (4)
N1 0.6714 (2) 1.14290 (17) 0.58676 (11) 0.0457 (3)
C1 0.17355 (19) 0.45206 (19) 0.83978 (12) 0.0404 (3)
C2 0.0214 (2) 0.3912 (2) 0.88416 (15) 0.0505 (4)
H2 −0.0877 0.4486 0.8552 0.061*
C3 0.0327 (2) 0.2455 (2) 0.97122 (17) 0.0571 (4)
H3 −0.0693 0.2046 1.0012 0.069*
C4 0.1931 (3) 0.1598 (2) 1.01429 (16) 0.0587 (4)
H4 0.1997 0.0611 1.0730 0.070*
C5 0.3451 (2) 0.2209 (2) 0.96994 (14) 0.0480 (3)
H5 0.4537 0.1627 0.9993 0.058*
C6 0.33717 (18) 0.36820 (18) 0.88208 (12) 0.0376 (3)
C7 0.50704 (19) 0.4244 (2) 0.83798 (12) 0.0402 (3)
C8 0.4875 (2) 0.6252 (2) 0.81244 (12) 0.0411 (3)
C9 0.59015 (19) 0.70248 (18) 0.70630 (12) 0.0384 (3)
C10 0.59340 (19) 0.87676 (18) 0.69408 (12) 0.0383 (3)
H10 0.5392 0.9386 0.7540 0.046*
C11 0.67654 (19) 0.95783 (17) 0.59376 (12) 0.0370 (3)
C12 0.7569 (2) 0.87131 (19) 0.50031 (12) 0.0397 (3)
C13 0.7560 (2) 0.6947 (2) 0.51480 (13) 0.0471 (3)
H13 0.8119 0.6315 0.4556 0.057*
C14 0.6734 (2) 0.61296 (19) 0.61536 (13) 0.0453 (3)
H14 0.6732 0.4958 0.6228 0.054*
C15 0.8938 (3) 0.8816 (3) 0.30568 (15) 0.0650 (5)
H15A 1.0008 0.7784 0.3192 0.098*
H15B 0.9292 0.9660 0.2416 0.098*
H15C 0.8008 0.8441 0.2911 0.098*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0595 (3) 0.0632 (3) 0.0616 (3) −0.0207 (2) −0.0251 (2) 0.0054 (2)
O1 0.0354 (5) 0.0565 (7) 0.0711 (8) −0.0172 (5) −0.0089 (5) 0.0038 (6)
O2 0.0625 (7) 0.0654 (7) 0.0542 (7) −0.0350 (6) 0.0107 (5) −0.0236 (6)
O3 0.0677 (7) 0.0483 (6) 0.0396 (5) −0.0255 (5) 0.0027 (5) −0.0083 (4)
O4 0.0917 (11) 0.0534 (7) 0.0943 (11) −0.0305 (7) 0.0123 (8) −0.0384 (8)
O5 0.0858 (10) 0.0603 (8) 0.0791 (9) −0.0483 (7) 0.0052 (7) −0.0153 (7)
N1 0.0600 (8) 0.0395 (6) 0.0464 (7) −0.0238 (6) −0.0113 (6) −0.0094 (5)
C1 0.0379 (7) 0.0413 (7) 0.0461 (7) −0.0148 (6) −0.0065 (5) −0.0128 (6)
C2 0.0344 (7) 0.0574 (9) 0.0682 (10) −0.0180 (6) −0.0040 (7) −0.0265 (8)
C3 0.0434 (8) 0.0594 (10) 0.0749 (11) −0.0309 (7) 0.0117 (8) −0.0246 (9)
C4 0.0578 (10) 0.0507 (9) 0.0641 (10) −0.0294 (8) 0.0054 (8) −0.0036 (8)
C5 0.0434 (7) 0.0443 (8) 0.0538 (9) −0.0187 (6) −0.0059 (6) −0.0013 (6)
C6 0.0344 (6) 0.0384 (6) 0.0425 (7) −0.0170 (5) −0.0023 (5) −0.0088 (5)
C7 0.0368 (7) 0.0461 (7) 0.0403 (7) −0.0199 (6) −0.0060 (5) −0.0035 (6)
C8 0.0387 (7) 0.0463 (7) 0.0448 (7) −0.0226 (6) −0.0046 (6) −0.0090 (6)
C9 0.0385 (6) 0.0377 (7) 0.0431 (7) −0.0180 (5) −0.0054 (5) −0.0080 (5)
C10 0.0406 (7) 0.0397 (7) 0.0398 (7) −0.0175 (6) −0.0045 (5) −0.0122 (5)
C11 0.0419 (7) 0.0333 (6) 0.0414 (7) −0.0174 (5) −0.0090 (5) −0.0070 (5)
C12 0.0412 (7) 0.0403 (7) 0.0388 (7) −0.0158 (6) −0.0040 (5) −0.0084 (5)
C13 0.0570 (9) 0.0404 (7) 0.0447 (8) −0.0172 (7) 0.0010 (6) −0.0173 (6)
C14 0.0535 (8) 0.0352 (7) 0.0510 (8) −0.0191 (6) −0.0041 (6) −0.0126 (6)
C15 0.0772 (12) 0.0696 (11) 0.0423 (8) −0.0258 (10) 0.0097 (8) −0.0175 (8)

Geometric parameters (Å, °)

Cl1—C1 1.7315 (16) C5—H5 0.9300
O1—C7 1.2072 (18) C6—C7 1.4894 (18)
O2—C8 1.2098 (18) C7—C8 1.531 (2)
O3—C12 1.3379 (17) C8—C9 1.4755 (19)
O3—C15 1.4329 (19) C9—C10 1.3888 (18)
O4—N1 1.2288 (19) C9—C14 1.392 (2)
O5—N1 1.2081 (18) C10—C11 1.3727 (19)
N1—C11 1.4649 (17) C10—H10 0.9300
C1—C2 1.386 (2) C11—C12 1.4039 (19)
C1—C6 1.387 (2) C12—C13 1.397 (2)
C2—C3 1.375 (3) C13—C14 1.375 (2)
C2—H2 0.9300 C13—H13 0.9300
C3—C4 1.371 (3) C14—H14 0.9300
C3—H3 0.9300 C15—H15A 0.9600
C4—C5 1.386 (2) C15—H15B 0.9600
C4—H4 0.9300 C15—H15C 0.9600
C5—C6 1.390 (2)
C12—O3—C15 118.41 (13) O2—C8—C7 116.30 (13)
O5—N1—O4 123.29 (13) C9—C8—C7 120.11 (12)
O5—N1—C11 119.95 (13) C10—C9—C14 118.62 (13)
O4—N1—C11 116.76 (13) C10—C9—C8 118.39 (12)
C2—C1—C6 120.96 (14) C14—C9—C8 122.86 (12)
C2—C1—Cl1 118.46 (12) C11—C10—C9 120.09 (12)
C6—C1—Cl1 120.49 (11) C11—C10—H10 120.0
C3—C2—C1 119.54 (15) C9—C10—H10 120.0
C3—C2—H2 120.2 C10—C11—C12 122.04 (12)
C1—C2—H2 120.2 C10—C11—N1 116.88 (12)
C4—C3—C2 120.65 (14) C12—C11—N1 121.04 (12)
C4—C3—H3 119.7 O3—C12—C13 124.79 (13)
C2—C3—H3 119.7 O3—C12—C11 118.04 (12)
C3—C4—C5 119.75 (16) C13—C12—C11 117.09 (13)
C3—C4—H4 120.1 C14—C13—C12 120.92 (13)
C5—C4—H4 120.1 C14—C13—H13 119.5
C4—C5—C6 120.75 (16) C12—C13—H13 119.5
C4—C5—H5 119.6 C13—C14—C9 121.19 (13)
C6—C5—H5 119.6 C13—C14—H14 119.4
C1—C6—C5 118.35 (12) C9—C14—H14 119.4
C1—C6—C7 124.05 (13) O3—C15—H15A 109.5
C5—C6—C7 117.59 (13) O3—C15—H15B 109.5
O1—C7—C6 122.20 (13) H15A—C15—H15B 109.5
O1—C7—C8 117.75 (12) O3—C15—H15C 109.5
C6—C7—C8 119.31 (12) H15A—C15—H15C 109.5
O2—C8—C9 123.30 (13) H15B—C15—H15C 109.5
C6—C1—C2—C3 −0.1 (2) O2—C8—C9—C14 −171.77 (15)
Cl1—C1—C2—C3 176.25 (12) C7—C8—C9—C14 14.6 (2)
C1—C2—C3—C4 −0.1 (3) C14—C9—C10—C11 0.4 (2)
C2—C3—C4—C5 0.2 (3) C8—C9—C10—C11 −175.55 (13)
C3—C4—C5—C6 −0.1 (3) C9—C10—C11—C12 1.3 (2)
C2—C1—C6—C5 0.3 (2) C9—C10—C11—N1 178.94 (12)
Cl1—C1—C6—C5 −176.05 (11) O5—N1—C11—C10 148.61 (15)
C2—C1—C6—C7 179.26 (13) O4—N1—C11—C10 −31.4 (2)
Cl1—C1—C6—C7 3.0 (2) O5—N1—C11—C12 −33.7 (2)
C4—C5—C6—C1 −0.2 (2) O4—N1—C11—C12 146.30 (16)
C4—C5—C6—C7 −179.23 (15) C15—O3—C12—C13 −0.3 (2)
C1—C6—C7—O1 −145.86 (16) C15—O3—C12—C11 −176.86 (15)
C5—C6—C7—O1 33.2 (2) C10—C11—C12—O3 174.20 (14)
C1—C6—C7—C8 44.2 (2) N1—C11—C12—O3 −3.4 (2)
C5—C6—C7—C8 −136.81 (14) C10—C11—C12—C13 −2.6 (2)
O1—C7—C8—O2 −119.03 (16) N1—C11—C12—C13 179.86 (14)
C6—C7—C8—O2 51.37 (19) O3—C12—C13—C14 −174.26 (15)
O1—C7—C8—C9 55.0 (2) C11—C12—C13—C14 2.3 (2)
C6—C7—C8—C9 −134.60 (14) C12—C13—C14—C9 −0.7 (3)
O2—C8—C9—C10 4.0 (2) C10—C9—C14—C13 −0.6 (2)
C7—C8—C9—C10 −169.64 (13) C8—C9—C14—C13 175.07 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C3—H3···O2i 0.93 2.53 3.318 (2) 143

Symmetry codes: (i) −x, −y+1, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5555).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Fun, H.-K. & Kia, R. (2008a). Acta Cryst. E64, o1615–o1616. [DOI] [PMC free article] [PubMed]
  4. Fun, H.-K. & Kia, R. (2008b). Acta Cryst. E64, o1617–o1618. [DOI] [PMC free article] [PubMed]
  5. Ganapaty, S., Srilakshmi, G. V. K., Pannakal, S. T., Rahman, H., Laatsch, H. & Brun, R. (2009). Phytochemistry, 70, 95–99. [DOI] [PubMed]
  6. Mahabusarakam, W., Deachathai, S., Phongpaichit, S., Jansakul, C. & Taylor, W. C. (2004). Phytochemistry, 65, 1185–1191. [DOI] [PubMed]
  7. Mousset, C., Giraud, A., Provot, O., Hamze, A., Bignon, J., Liu, J.-M., Thoret, S., Dubois, J., Brion, J.-D. & Alami, M. (2008). Bioorg. Med. Chem. Lett. 18, 3266–3271. [DOI] [PubMed]
  8. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019532/bt5555sup1.cif

e-67-o1535-sup1.cif (16.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019532/bt5555Isup2.hkl

e-67-o1535-Isup2.hkl (189KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019532/bt5555Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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