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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 25;67(Pt 6):m789. doi: 10.1107/S1600536811018630

catena-Poly[[bis­(nitrato-κO)cobalt(II)]-bis­[μ-1,4-bis­(pyridin-3-ylmeth­oxy)benzene-κ2 N:N′]]

Ying Liu a,*, Hong-Sen Zhang b, Guang-Feng Hou c, Jin-Sheng Gao c
PMCID: PMC3120598  PMID: 21754669

Abstract

In the title compound, [Co(NO3)2(C18H16N2O2)2]n, the CoII ion is located on an inversion center and is six-coordinated in an octa­hedral environment defined by four N atoms of the pyridine rings and two O atoms of the nitrate anions. The ligands link the CoII ions into a linear chain running along [201]. One O atom of the nitrate ligand is disordered over two positions with site-occupancy factors of 0.59 (4) and 0.41 (4).

Related literature

For the synthesis and background to our study of flexible pyridyl-based aromatic ligands, see: Liu et al. (2010a ,b ); Yu et al. (2010). For the isotypic Cu(II) compound, see: Zou et al. (2011).graphic file with name e-67-0m789-scheme1.jpg

Experimental

Crystal data

  • [Co(NO3)2(C18H16N2O2)2]

  • M r = 767.61

  • Monoclinic, Inline graphic

  • a = 8.3864 (17) Å

  • b = 16.751 (3) Å

  • c = 13.273 (5) Å

  • β = 115.26 (2)°

  • V = 1686.3 (8) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.58 mm−1

  • T = 291 K

  • 0.21 × 0.19 × 0.17 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.888, T max = 0.907

  • 15667 measured reflections

  • 3770 independent reflections

  • 3176 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.093

  • S = 1.07

  • 3770 reflections

  • 251 parameters

  • 12 restraints

  • H-atom parameters constrained

  • Δρmax = 0.40 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018630/ng5160sup1.cif

e-67-0m789-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018630/ng5160Isup2.hkl

e-67-0m789-Isup2.hkl (184.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—N2i 2.1307 (15)
Co1—O3 2.1682 (13)
Co1—N1 2.2016 (15)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Heilongjiang Institute of Technology and Heilongjiang University for supporting this work.

supplementary crystallographic information

Comment

The bridging compounds with rigid and flexible pyridyl-containing bidentate or multidentate organic spacers have assemble numerous interesting topology structures by coordination with metals and intermolecular supramolecular interaction. Our group focus attention on study of flexible pyridyl-based aromatic ligands, and obtained some isolated molecule, chain, plane and three-dimensional network structures (Liu et al., 2010a; Liu et al., 2010b; Yu et al., 2010). Herein, as a continuing work for pyridyl ligands, we report the synthesis and crystal structure of the title compound, which is a isomorphic compound of our previous report (Zou et al., 2011).

An asymmetric unit of the title compound consists of a 1,4-bis(pyridin-3-ylmethoxy)benzene molecule, a nitrate anion and a CoII cation (Figure 1). The CoII cation lie on an inversion center and is six-coordinated in the octahedral geometry environment defined by four N atoms of the pyridine derivatives and two O atoms of the nitrate anions (Table 1).

In the crystal, ribbon structures along [2 0 1] direction are built up by N-heterocyclic ligands linking CoII cations (Figure 2).

Experimental

The 1,4-bis(pyridin-3-ylmethoxy)benzene ligand was synthesized as the reference method (Liu et al., 2010a): A mixture of 1,4-dihydroxybenzene (1.1 g, 10 mmol), 3-chloromethylpyridine hydrochloride (3.28 g, 20 mmol) and NaOH (1.6 g, 40 mmol) in acetonitrile (50 ml) was refluxed under nitrogen with stirring for 24 h. After cooling to room temperature, the solution was filtered and the residue was washed with acetonitrile for several times. The mixed filtrate was droped into 300 ml water solution to get the powder crude product. A total of 2.51 g (yield 86%) pure product was obtained by recrystallizing from the mixed solution of 10 ml water and 10 ml me thanol. The title compound was synthesized by reaction of 1,4-bis(pyridin-3-ylmethoxy)benzene ligand (0.29 g, 1.0 mmol) and Co(NO3)2.6H2O (0.29 g, 1.0 mmol) in 5 ml water and 5 ml me thanol mixed solution, and filtered after stirring for about 1 h. The filtate allowed to stand for four days under the room temperature to obtain pink block-like crystals suitable for X-ray analysis.

Refinement

O5 atom of nitrate was disordered over two positions with site occupancy factors of ca 0.41 and 0.59,and then, the two positions were restraint refined with commond 'Iosr 0.005 O5 O4'. Four anormal reflection datas, namely, (7 0 4), (-7 5 3), (5 4 5), (7 5 2), have been omited. H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic); C—H = 0.97 Å (methylene), and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing displacement ellipsoids at the 50% probability level for non-H atoms, disordered O5' atom has been omitted for clarity, Symmetry codes: (I) -2 - x, -y, -z; (II) -2 + x, y, -1 + z; (III) -x, -y, 1 - z.

Fig. 2.

Fig. 2.

A partial packing view, showing the ribbon structure along [2 0 1] direction. Disordered O5' atoms and no involving H atoms have been omitted for clarity.

Crystal data

[Co(NO3)2(C18H16N2O2)2] F(000) = 794
Mr = 767.61 Dx = 1.512 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 13456 reflections
a = 8.3864 (17) Å θ = 3.3–27.5°
b = 16.751 (3) Å µ = 0.58 mm1
c = 13.273 (5) Å T = 291 K
β = 115.26 (2)° Block, red
V = 1686.3 (8) Å3 0.21 × 0.19 × 0.17 mm
Z = 2

Data collection

Rigaku R-AXIS RAPID diffractometer 3770 independent reflections
Radiation source: fine-focus sealed tube 3176 reflections with I > 2σ(I)
graphite Rint = 0.029
ω scans θmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −10→10
Tmin = 0.888, Tmax = 0.907 k = −21→21
15667 measured reflections l = −16→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0468P)2 + 0.568P] where P = (Fo2 + 2Fc2)/3
3770 reflections (Δ/σ)max < 0.001
251 parameters Δρmax = 0.40 e Å3
12 restraints Δρmin = −0.24 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Co1 −1.0000 0.0000 0.0000 0.02593 (10)
O1 −0.18789 (18) −0.14784 (9) 0.32358 (15) 0.0595 (5)
O2 0.52403 (19) −0.11163 (9) 0.58551 (15) 0.0593 (5)
O3 −1.20689 (16) −0.06442 (7) 0.02231 (11) 0.0352 (3)
O4 −1.2179 (2) −0.18994 (9) −0.01783 (15) 0.0581 (4)
O5 −1.4545 (10) −0.1223 (6) −0.0743 (18) 0.063 (3) 0.41 (4)
N1 −0.78768 (18) −0.07480 (9) 0.11956 (11) 0.0296 (3)
N2 0.98946 (18) −0.07047 (8) 0.86365 (11) 0.0281 (3)
N3 −1.2934 (2) −0.12828 (9) −0.01457 (13) 0.0363 (3)
C1 −0.8314 (2) −0.13113 (11) 0.17496 (15) 0.0346 (4)
H1 −0.9503 −0.1403 0.1556 0.041*
C2 −0.7088 (2) −0.17610 (12) 0.25912 (15) 0.0380 (4)
H2 −0.7452 −0.2152 0.2945 0.046*
C3 −0.5319 (2) −0.16281 (11) 0.29067 (14) 0.0353 (4)
H3 −0.4472 −0.1925 0.3476 0.042*
C4 −0.4826 (2) −0.10430 (11) 0.23586 (14) 0.0318 (4)
C5 −0.6145 (2) −0.06312 (10) 0.15006 (14) 0.0318 (4)
H5 −0.5813 −0.0253 0.1114 0.038*
C6 −0.2936 (2) −0.08121 (12) 0.27107 (17) 0.0420 (5)
H6A −0.2746 −0.0656 0.2066 0.050*
H6B −0.2633 −0.0364 0.3222 0.050*
C7 −0.0111 (2) −0.13537 (11) 0.38925 (16) 0.0379 (4)
C8 0.0822 (2) −0.20193 (11) 0.44505 (16) 0.0358 (4)
H8 0.0244 −0.2504 0.4378 0.043*
C9 0.2614 (2) −0.19664 (11) 0.51163 (15) 0.0353 (4)
H9 0.3245 −0.2416 0.5485 0.042*
C10 0.3463 (2) −0.12396 (11) 0.52298 (15) 0.0372 (4)
C11 0.2531 (3) −0.05720 (12) 0.46827 (18) 0.0438 (5)
H11 0.3105 −0.0085 0.4768 0.053*
C12 0.0744 (3) −0.06280 (12) 0.40079 (18) 0.0440 (5)
H12 0.0117 −0.0180 0.3632 0.053*
C13 0.6332 (2) −0.17831 (11) 0.62877 (16) 0.0394 (4)
H13A 0.6360 −0.2106 0.5689 0.047*
H13B 0.5902 −0.2109 0.6724 0.047*
C14 0.8133 (2) −0.14676 (10) 0.70073 (14) 0.0314 (4)
C15 0.9609 (2) −0.16228 (11) 0.68233 (15) 0.0379 (4)
H15 0.9519 −0.1924 0.6213 0.045*
C16 1.1220 (2) −0.13215 (11) 0.75657 (16) 0.0381 (4)
H16 1.2228 −0.1416 0.7457 0.046*
C17 1.1322 (2) −0.08808 (10) 0.84652 (15) 0.0317 (4)
H17 1.2418 −0.0698 0.8973 0.038*
C18 0.8350 (2) −0.09926 (10) 0.79096 (14) 0.0298 (3)
H18 0.7352 −0.0866 0.8016 0.036*
O5' −1.4489 (10) −0.1298 (4) −0.0282 (16) 0.065 (2) 0.59 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.01535 (16) 0.03043 (17) 0.02660 (16) 0.00104 (12) 0.00375 (12) −0.00271 (12)
O1 0.0175 (7) 0.0419 (8) 0.0931 (12) 0.0015 (6) −0.0013 (7) 0.0135 (8)
O2 0.0236 (8) 0.0371 (8) 0.0823 (11) −0.0020 (6) −0.0107 (7) 0.0046 (7)
O3 0.0260 (7) 0.0340 (7) 0.0433 (7) −0.0036 (5) 0.0126 (5) −0.0017 (5)
O4 0.0532 (10) 0.0361 (8) 0.0798 (11) 0.0038 (7) 0.0233 (9) −0.0053 (7)
O5 0.022 (2) 0.072 (3) 0.078 (5) −0.0074 (18) 0.006 (3) −0.001 (3)
N1 0.0200 (7) 0.0342 (7) 0.0296 (7) 0.0021 (5) 0.0057 (6) −0.0005 (5)
N2 0.0196 (7) 0.0311 (7) 0.0289 (7) 0.0012 (5) 0.0057 (5) −0.0019 (5)
N3 0.0251 (8) 0.0375 (8) 0.0442 (8) −0.0004 (6) 0.0126 (7) 0.0024 (6)
C1 0.0203 (9) 0.0422 (10) 0.0376 (9) −0.0013 (7) 0.0090 (7) 0.0001 (7)
C2 0.0311 (10) 0.0434 (10) 0.0373 (9) −0.0023 (8) 0.0125 (8) 0.0068 (7)
C3 0.0258 (10) 0.0418 (10) 0.0304 (8) 0.0041 (7) 0.0045 (7) 0.0063 (7)
C4 0.0199 (9) 0.0374 (9) 0.0329 (8) 0.0024 (7) 0.0064 (7) 0.0012 (7)
C5 0.0216 (9) 0.0350 (9) 0.0348 (8) 0.0024 (7) 0.0082 (7) 0.0053 (7)
C6 0.0196 (9) 0.0469 (11) 0.0503 (11) 0.0034 (8) 0.0060 (8) 0.0123 (8)
C7 0.0164 (9) 0.0434 (10) 0.0462 (10) 0.0015 (7) 0.0059 (7) 0.0062 (8)
C8 0.0248 (9) 0.0341 (9) 0.0441 (10) −0.0027 (7) 0.0106 (8) 0.0039 (7)
C9 0.0250 (9) 0.0352 (9) 0.0370 (9) 0.0036 (7) 0.0047 (7) 0.0057 (7)
C10 0.0186 (9) 0.0406 (10) 0.0397 (9) 0.0001 (7) 0.0001 (7) −0.0005 (7)
C11 0.0259 (10) 0.0345 (10) 0.0584 (12) −0.0030 (7) 0.0059 (9) 0.0041 (8)
C12 0.0250 (10) 0.0361 (10) 0.0585 (12) 0.0056 (8) 0.0058 (9) 0.0120 (8)
C13 0.0255 (10) 0.0377 (10) 0.0407 (10) 0.0017 (7) 0.0003 (8) −0.0080 (7)
C14 0.0229 (9) 0.0315 (8) 0.0315 (8) 0.0022 (7) 0.0038 (7) −0.0022 (6)
C15 0.0336 (11) 0.0393 (10) 0.0382 (9) 0.0037 (8) 0.0128 (8) −0.0091 (7)
C16 0.0266 (10) 0.0388 (10) 0.0505 (11) 0.0028 (7) 0.0182 (8) −0.0058 (8)
C17 0.0198 (8) 0.0313 (9) 0.0381 (9) 0.0004 (6) 0.0067 (7) −0.0019 (7)
C18 0.0182 (8) 0.0366 (9) 0.0302 (8) 0.0008 (6) 0.0059 (6) −0.0024 (6)
O5' 0.0261 (19) 0.076 (2) 0.093 (5) −0.0091 (15) 0.025 (2) −0.003 (3)

Geometric parameters (Å, °)

Co1—N2i 2.1307 (15) C4—C5 1.386 (2)
Co1—N2ii 2.1307 (15) C4—C6 1.500 (3)
Co1—O3 2.1682 (13) C5—H5 0.9300
Co1—O3iii 2.1682 (13) C6—H6A 0.9700
Co1—N1 2.2016 (15) C6—H6B 0.9700
Co1—N1iii 2.2016 (15) C7—C8 1.382 (3)
O1—C7 1.378 (2) C7—C12 1.386 (3)
O1—C6 1.411 (2) C8—C9 1.384 (3)
O2—C10 1.377 (2) C8—H8 0.9300
O2—C13 1.402 (2) C9—C10 1.386 (3)
O3—N3 1.2679 (19) C9—H9 0.9300
O4—N3 1.222 (2) C10—C11 1.380 (3)
O5—O5' 0.606 (9) C11—C12 1.383 (3)
O5—N3 1.245 (7) C11—H11 0.9300
N1—C1 1.340 (2) C12—H12 0.9300
N1—C5 1.346 (2) C13—C14 1.497 (2)
N2—C18 1.332 (2) C13—H13A 0.9700
N2—C17 1.343 (2) C13—H13B 0.9700
N2—Co1iv 2.1307 (15) C14—C18 1.384 (2)
N3—O5' 1.238 (5) C14—C15 1.385 (3)
C1—C2 1.376 (3) C15—C16 1.384 (3)
C1—H1 0.9300 C15—H15 0.9300
C2—C3 1.377 (3) C16—C17 1.375 (3)
C2—H2 0.9300 C16—H16 0.9300
C3—C4 1.385 (3) C17—H17 0.9300
C3—H3 0.9300 C18—H18 0.9300
N2i—Co1—N2ii 180.00 (7) O1—C6—C4 107.92 (16)
N2i—Co1—O3 84.57 (5) O1—C6—H6A 110.1
N2ii—Co1—O3 95.43 (5) C4—C6—H6A 110.1
N2i—Co1—O3iii 95.43 (5) O1—C6—H6B 110.1
N2ii—Co1—O3iii 84.57 (5) C4—C6—H6B 110.1
O3—Co1—O3iii 180.00 (9) H6A—C6—H6B 108.4
N2i—Co1—N1 88.60 (6) O1—C7—C8 115.30 (17)
N2ii—Co1—N1 91.40 (6) O1—C7—C12 124.69 (17)
O3—Co1—N1 93.81 (5) C8—C7—C12 120.00 (17)
O3iii—Co1—N1 86.19 (5) C7—C8—C9 120.22 (17)
N2i—Co1—N1iii 91.40 (6) C7—C8—H8 119.9
N2ii—Co1—N1iii 88.60 (6) C9—C8—H8 119.9
O3—Co1—N1iii 86.19 (5) C8—C9—C10 119.56 (17)
O3iii—Co1—N1iii 93.81 (5) C8—C9—H9 120.2
N1—Co1—N1iii 180.00 (13) C10—C9—H9 120.2
C7—O1—C6 118.18 (15) O2—C10—C11 114.82 (17)
C10—O2—C13 118.47 (15) O2—C10—C9 124.82 (17)
N3—O3—Co1 136.62 (11) C11—C10—C9 120.36 (17)
O5'—O5—N3 75.2 (11) C10—C11—C12 119.99 (18)
C1—N1—C5 116.76 (15) C10—C11—H11 120.0
C1—N1—Co1 118.02 (12) C12—C11—H11 120.0
C5—N1—Co1 124.85 (11) C11—C12—C7 119.86 (18)
C18—N2—C17 117.35 (15) C11—C12—H12 120.1
C18—N2—Co1iv 119.38 (11) C7—C12—H12 120.1
C17—N2—Co1iv 123.27 (11) O2—C13—C14 106.54 (15)
O4—N3—O5' 120.5 (3) O2—C13—H13A 110.4
O4—N3—O5 118.9 (5) C14—C13—H13A 110.4
O5'—N3—O5 28.3 (4) O2—C13—H13B 110.4
O4—N3—O3 120.46 (16) C14—C13—H13B 110.4
O5'—N3—O3 117.9 (3) H13A—C13—H13B 108.6
O5—N3—O3 117.7 (5) C18—C14—C15 117.62 (16)
N1—C1—C2 123.13 (17) C18—C14—C13 118.62 (16)
N1—C1—H1 118.4 C15—C14—C13 123.76 (16)
C2—C1—H1 118.4 C16—C15—C14 118.72 (16)
C1—C2—C3 119.57 (17) C16—C15—H15 120.6
C1—C2—H2 120.2 C14—C15—H15 120.6
C3—C2—H2 120.2 C17—C16—C15 119.63 (17)
C2—C3—C4 118.62 (16) C17—C16—H16 120.2
C2—C3—H3 120.7 C15—C16—H16 120.2
C4—C3—H3 120.7 N2—C17—C16 122.36 (16)
C3—C4—C5 118.15 (16) N2—C17—H17 118.8
C3—C4—C6 122.12 (16) C16—C17—H17 118.8
C5—C4—C6 119.62 (16) N2—C18—C14 124.24 (16)
N1—C5—C4 123.73 (16) N2—C18—H18 117.9
N1—C5—H5 118.1 C14—C18—H18 117.9
C4—C5—H5 118.1 O5—O5'—N3 76.5 (11)

Symmetry codes: (i) −x, −y, −z+1; (ii) x−2, y, z−1; (iii) −x−2, −y, −z; (iv) x+2, y, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5160).

References

  1. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  2. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010a). Cryst. Growth Des. 10, 1559–1568.
  3. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010b). Inorg. Chem. Commun. 13, 630–632.
  4. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  5. Rigaku/MSC (2002). CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Yu, Y.-H., Gao, J.-S., Wang, L.-X., Liu, Y. & Hou, G.-F. (2010). Acta Cryst. E66, m872. [DOI] [PMC free article] [PubMed]
  8. Zou, P., Liu, Y., Hou, G.-F. & Gao, J.-S. (2011). Acta Cryst. E67, m692. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018630/ng5160sup1.cif

e-67-0m789-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018630/ng5160Isup2.hkl

e-67-0m789-Isup2.hkl (184.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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