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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 7;67(Pt 6):m665. doi: 10.1107/S1600536811015492

Poly[hexa­aqua­bis­(μ3-hepta­nedioato-κ3 O:O′:O′′)dimagnesium]

Xia-Xia Guo a, Jian-li Lin a,*
PMCID: PMC3120615  PMID: 21754577

Abstract

In the title compound, [Mg2(C7H10O4)2(H2O)6]n, the MgII ion is coordinated by three aqua ligands and three O atoms from three heptanedioato ligands in a distorted octa­hedral geometry. Each heptanedioato ligand bridges three Mg atoms, generating polymeric layers parallel to the bc plane. The polymeric layers related by translation along the a axis inter­act further via O—H⋯O hydrogen bonds, which consolidate the crystal packing.

Related literature

For general background to microporous coordination polymers, see: Borkowski & Cahill (2006); Dimos et al. (2002); Kim et al. (2001). For related structures, see: Liu et al. (2009).graphic file with name e-67-0m665-scheme1.jpg

Experimental

Crystal data

  • [Mg2(C7H10O4)2(H2O)6]

  • M r = 236.51

  • Monoclinic, Inline graphic

  • a = 14.311 (3) Å

  • b = 8.2080 (16) Å

  • c = 9.1280 (18) Å

  • β = 96.22 (3)°

  • V = 1065.9 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.18 mm−1

  • T = 293 K

  • 0.1 × 0.1 × 0.1 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.982, T max = 0.982

  • 8118 measured reflections

  • 1880 independent reflections

  • 1440 reflections with I > 2σ(I)

  • R int = 0.040

Refinement

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.121

  • S = 1.16

  • 1880 reflections

  • 136 parameters

  • H-atom parameters constrained

  • Δρmax = 0.34 e Å−3

  • Δρmin = −0.46 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015492/cv5076sup1.cif

e-67-0m665-sup1.cif (15.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015492/cv5076Isup2.hkl

e-67-0m665-Isup2.hkl (92.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5C⋯O2i 0.84 1.92 2.741 (3) 165
O5—H5D⋯O6ii 0.84 1.99 2.818 (3) 168
O6—H6C⋯O2iii 0.82 2.07 2.882 (3) 170
O6—H6D⋯O5iii 0.82 2.06 2.879 (3) 171
O7—H7A⋯O4iv 0.83 1.94 2.725 (3) 158
O7—H7B⋯O2v 0.79 2.26 2.798 (3) 127

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

This project was supported by the Scientific Research Fund of Ningbo University (grant No. XKL069) and the Education Department of Zhejiang Province. Grateful thanks are also extended to the K. C. Wong Magna Fund in Ningbo University.

supplementary crystallographic information

Comment

The past decade has witnessed enormous expansion of research on robust microporous coordination polymers (Borkowski et al., 2006; Dimos et al., 2002; Kim et al., 2001). For such purpose, design and synthesis of novel coordination polymers have been focused on organic ligands, others have reported lists of complexs used dicarboxylic acids. In this contribution, we report the crystal structure of the title compound (I).

In (I) (Fig. 1), two carboxylate groups of pimelato (pim2–) ligand display different coordination behaviour - in the O1–C1–O2 group only one O1 atom coordinate one Mg center, while the O3–C7–O4 carboxylate group coordinate two Mg centers in an syn/anti mode. The Mg atoms are six-coordinated by three oxygen atoms from three pim2– anions and three aqua ligands to complete a distorted MgO6 octahedra with the Mg–O distances in the range of 1.999 (3)–2.156 (2) Å. The trans– and cisoid– O–Mg–O angles lie in the region 81.4 (1)–98.7 (1)° and 168.5 (1)– 171.8 (1)°.The Mg coordination sphere in (I) is similar to that observed in Mg2(H2O)6(BTEC) (Liu et al., 2009). The Mg2+ ions are bridged by the pimelate anions, forming the polymeric layers parallel to (100) (Fig. 2). When the Mg atom and the pim2– anions are treated as 3– nodes, the two-dimensional layers can be best described as (4.82) topological network. Intermolecular O—H···O hydrogen bonds (Table 1) between the aqua ligand and carboxylate oxygen atoms make a contribution to stabilization of the three-dimensional framework.

Experimental

Dropwise addition of 1 M NaOH (1.0 ml) to a stirred aqueous solution of (0.1248 g, 0.5 mmol) MgSO4.7H2O in 5.0 ml H2O produced pale-white Mg(OH)2.xH2O precipitate, which was separated by centrifugation and washed with distilled water several times until no detectable SO42– anions in the supernatant. Subsequently, the 0.0815 g (0.5 mmol) pimelic acid was dissolved completely with 15 ml H2O, and then the precipitate was added. The resulting mixture was further stirred for 30 min and then filtered. The white filtrate (pH = 5.70) was allowed to stand at room temperature. Slow evaporation for several days afforded colourless platelet-like crystals.

Refinement

H atoms bounded to C atoms were palced in geometrically calculated position and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). H atoms attached to O atoms were found in a difference Fourier synthesis and were refined using a riding model, with the O—H distances fixed as initially found and with Uiso(H) values set at 1.2 Ueq(O).

Figures

Fig. 1.

Fig. 1.

A portion of the crystal structure of (I) showing the atomic numbering and 45% probabilty dispalcement ellipsoids [wymmetry codes: (i)-x + 1, -y, -z;(ii)-x + 1, y + 1/2, -z - 1/2;(iii)-x + 1, y - 1/2, -z - 1/2.]

Fig. 2.

Fig. 2.

Two-dimensional polymeric layer in (I) viewed along the axis a.

Crystal data

[Mg2(C7H10O4)2(H2O)6] F(000) = 504
Mr = 236.51 Dx = 1.474 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6164 reflections
a = 14.311 (3) Å θ = 3.4–27.4°
b = 8.2080 (16) Å µ = 0.18 mm1
c = 9.1280 (18) Å T = 293 K
β = 96.22 (3)° Platelet, colourless
V = 1065.9 (4) Å3 0.1 × 0.1 × 0.1 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID diffractometer 1880 independent reflections
Radiation source: fine-focus sealed tube 1440 reflections with I > 2σ(I)
graphite Rint = 0.040
Detector resolution: 0 pixels mm-1 θmax = 25.0°, θmin = 3.4°
ω scans h = −16→17
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −9→9
Tmin = 0.982, Tmax = 0.982 l = −10→10
8118 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121 H-atom parameters constrained
S = 1.16 w = 1/[σ2(Fo2) + (0.0228P)2 + 2.4599P] where P = (Fo2 + 2Fc2)/3
1880 reflections (Δ/σ)max < 0.001
136 parameters Δρmax = 0.34 e Å3
0 restraints Δρmin = −0.45 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Mg 0.83863 (7) 0.14609 (13) 0.01196 (11) 0.0200 (3)
O1 0.84242 (17) −0.0886 (3) −0.0455 (3) 0.0360 (6)
O2 0.87832 (17) −0.3395 (3) −0.0967 (3) 0.0329 (6)
C1 0.8253 (2) −0.2167 (4) −0.1155 (4) 0.0236 (7)
C2 0.7382 (2) −0.2240 (5) −0.2254 (4) 0.0300 (8)
H2A 0.7349 −0.3299 −0.2729 0.036*
H2B 0.7429 −0.1422 −0.3010 0.036*
C3 0.6484 (2) −0.1956 (5) −0.1530 (4) 0.0328 (8)
H3A 0.6418 −0.2815 −0.0820 0.039*
H3B 0.6536 −0.0930 −0.1000 0.039*
C4 0.5610 (2) −0.1918 (5) −0.2641 (4) 0.0331 (9)
H4A 0.5639 −0.0966 −0.3265 0.040*
H4B 0.5609 −0.2874 −0.3265 0.040*
C5 0.4696 (2) −0.1871 (5) −0.1933 (4) 0.0325 (9)
H5A 0.4668 −0.2815 −0.1300 0.039*
H5B 0.4690 −0.0906 −0.1321 0.039*
C6 0.3837 (2) −0.1858 (5) −0.3061 (4) 0.0315 (9)
H6A 0.3897 −0.2728 −0.3764 0.038*
H6B 0.3823 −0.0836 −0.3597 0.038*
C7 0.2909 (2) −0.2061 (4) −0.2417 (3) 0.0228 (7)
O3 0.28052 (15) −0.1400 (3) −0.1210 (2) 0.0258 (5)
O4 0.22845 (16) −0.2917 (3) −0.3134 (2) 0.0334 (6)
O5 0.92533 (15) 0.0681 (3) 0.2049 (2) 0.0235 (5)
H5C 0.9043 −0.0086 0.2529 0.028*
H5D 0.9462 0.1397 0.2650 0.028*
O6 0.96828 (14) 0.1863 (3) −0.0827 (2) 0.0248 (5)
H6C 1.0161 0.2242 −0.0385 0.030*
H6D 0.9957 0.1165 −0.1271 0.030*
O7 0.86395 (18) 0.3864 (3) 0.0818 (3) 0.0362 (6)
H7A 0.8443 0.3779 0.1634 0.043*
H7B 0.8941 0.4666 0.0795 0.043*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Mg 0.0191 (5) 0.0224 (6) 0.0185 (5) 0.0025 (4) 0.0021 (4) −0.0003 (4)
O1 0.0318 (14) 0.0282 (14) 0.0459 (15) 0.0026 (11) −0.0047 (12) −0.0147 (12)
O2 0.0375 (14) 0.0289 (14) 0.0314 (13) 0.0097 (12) 0.0004 (11) −0.0011 (11)
C1 0.0207 (16) 0.0225 (18) 0.0287 (17) 0.0000 (14) 0.0071 (14) −0.0023 (15)
C2 0.0237 (17) 0.037 (2) 0.0285 (18) −0.0024 (16) −0.0003 (14) −0.0087 (16)
C3 0.0236 (18) 0.042 (2) 0.0330 (19) −0.0024 (16) 0.0022 (15) −0.0051 (17)
C4 0.0214 (17) 0.045 (2) 0.0327 (19) −0.0045 (16) 0.0038 (15) −0.0068 (17)
C5 0.0204 (17) 0.044 (2) 0.0332 (19) −0.0015 (16) 0.0028 (15) −0.0064 (18)
C6 0.0221 (17) 0.049 (2) 0.0247 (18) −0.0026 (16) 0.0076 (14) −0.0054 (17)
C7 0.0187 (16) 0.0303 (19) 0.0191 (16) −0.0001 (14) 0.0000 (13) 0.0031 (15)
O3 0.0221 (12) 0.0362 (14) 0.0192 (11) −0.0031 (10) 0.0033 (9) −0.0069 (10)
O4 0.0239 (12) 0.0552 (17) 0.0210 (12) −0.0119 (12) 0.0022 (10) −0.0101 (12)
O5 0.0267 (12) 0.0217 (12) 0.0217 (11) −0.0028 (10) 0.0004 (9) 0.0009 (10)
O6 0.0176 (11) 0.0317 (13) 0.0251 (12) 0.0046 (10) 0.0017 (9) 0.0006 (10)
O7 0.0553 (17) 0.0227 (13) 0.0338 (14) −0.0023 (12) 0.0204 (12) 0.0000 (11)

Geometric parameters (Å, °)

Mg—O1 1.999 (3) C4—H4B 0.9700
Mg—O4i 2.023 (2) C5—C6 1.517 (5)
Mg—O3ii 2.066 (2) C5—H5A 0.9700
Mg—O7 2.093 (3) C5—H5B 0.9700
Mg—O5 2.140 (2) C6—C7 1.518 (4)
Mg—O6 2.156 (2) C6—H6A 0.9700
Mg—H7A 2.3478 C6—H6B 0.9700
O1—C1 1.241 (4) C7—O3 1.251 (4)
O2—C1 1.263 (4) C7—O4 1.263 (4)
C1—C2 1.514 (5) O3—Mgii 2.066 (2)
C2—C3 1.525 (5) O4—Mgiii 2.023 (2)
C2—H2A 0.9700 O5—H5C 0.8407
C2—H2B 0.9700 O5—H5D 0.8365
C3—C4 1.523 (5) O6—H6C 0.8177
C3—H3A 0.9700 O6—H6D 0.8245
C3—H3B 0.9700 O7—H7A 0.8268
C4—C5 1.521 (4) O7—H7B 0.7876
C4—H4A 0.9700
O1—Mg—O4i 91.82 (12) C2—C3—H3B 109.1
O1—Mg—O3ii 98.66 (11) H3A—C3—H3B 107.8
O4i—Mg—O3ii 95.83 (10) C5—C4—C3 113.6 (3)
O1—Mg—O7 168.45 (11) C5—C4—H4A 108.8
O4i—Mg—O7 94.85 (11) C3—C4—H4A 108.8
O3ii—Mg—O7 90.04 (10) C5—C4—H4B 108.8
O1—Mg—O5 84.14 (10) C3—C4—H4B 108.8
O4i—Mg—O5 171.83 (10) H4A—C4—H4B 107.7
O3ii—Mg—O5 91.81 (9) C6—C5—C4 112.5 (3)
O7—Mg—O5 88.03 (10) C6—C5—H5A 109.1
O1—Mg—O6 89.61 (10) C4—C5—H5A 109.1
O4i—Mg—O6 86.98 (10) C6—C5—H5B 109.1
O3ii—Mg—O6 171.16 (11) C4—C5—H5B 109.1
O7—Mg—O6 81.36 (10) H5A—C5—H5B 107.8
O5—Mg—O6 85.89 (9) C5—C6—C7 114.5 (3)
O1—Mg—H7A 159.3 C5—C6—H6A 108.6
O4i—Mg—H7A 107.8 C7—C6—H6A 108.6
O3ii—Mg—H7A 73.4 C5—C6—H6B 108.6
O7—Mg—H7A 20.4 C7—C6—H6B 108.6
O5—Mg—H7A 77.2 H6A—C6—H6B 107.6
O6—Mg—H7A 97.8 O3—C7—O4 123.5 (3)
C1—O1—Mg 160.5 (2) O3—C7—C6 119.1 (3)
O1—C1—O2 121.7 (3) O4—C7—C6 117.4 (3)
O1—C1—C2 118.5 (3) C7—O3—Mgii 126.7 (2)
O2—C1—C2 119.9 (3) C7—O4—Mgiii 147.7 (2)
C1—C2—C3 112.2 (3) Mg—O5—H5C 116.3
C1—C2—H2A 109.2 Mg—O5—H5D 117.6
C3—C2—H2A 109.2 H5C—O5—H5D 107.9
C1—C2—H2B 109.2 Mg—O6—H6C 124.8
C3—C2—H2B 109.2 Mg—O6—H6D 124.5
H2A—C2—H2B 107.9 H6C—O6—H6D 95.2
C4—C3—C2 112.6 (3) Mg—O7—H7A 97.5
C4—C3—H3A 109.1 Mg—O7—H7B 148.9
C2—C3—H3A 109.1 H7A—O7—H7B 109.5
C4—C3—H3B 109.1

Symmetry codes: (i) −x+1, y+1/2, −z−1/2; (ii) −x+1, −y, −z; (iii) −x+1, y−1/2, −z−1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O5—H5C···O2iv 0.84 1.92 2.741 (3) 165
O5—H5D···O6v 0.84 1.99 2.818 (3) 168
O6—H6C···O2vi 0.82 2.07 2.882 (3) 170
O6—H6D···O5vi 0.82 2.06 2.879 (3) 171
O7—H7A···O4ii 0.83 1.94 2.725 (3) 158
O7—H7B···O2vii 0.79 2.26 2.798 (3) 127

Symmetry codes: (iv) x, −y−1/2, z+1/2; (v) x, −y+1/2, z+1/2; (vi) −x+2, −y, −z; (ii) −x+1, −y, −z; (vii) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV5076).

References

  1. Borkowski, L. A. & Cahill, C. L. (2006). Cryst. Growth Des. 6, 2241–2247
  2. Dimos, A., Tsaousis, D., Michaelides, A., Skoulika, S., Golhen, S., Ouahab, L., Didierjean, C. & Aubry, A. (2002). Chem. Mater 14, 2616–2622
  3. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  4. Kim, Y. J., Lee, E. W. & Jung, D. Y. (2001). Chem. Mater 13, 2684–2690
  5. Liu, H. K., Tsao, T. H., Zhang, Y. T. & Lin, C. H. (2009). CrystEngComm, 11, 1462–1468.
  6. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  7. Rigaku/MSC (2004). CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015492/cv5076sup1.cif

e-67-0m665-sup1.cif (15.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015492/cv5076Isup2.hkl

e-67-0m665-Isup2.hkl (92.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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