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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 20;67(Pt 6):m782. doi: 10.1107/S1600536811018708

Diaqua­bis­(2-oxo-2H-chromene-3-carboxyl­ato)copper(II)

Yue Cui a, Qian Gao a, Huan-Huan Wang a, Lin Wang a, Ya-Bo Xie a,*
PMCID: PMC3120618  PMID: 21754664

Abstract

In the title compound, [Cu(C10H5O4)2(H2O)2], the CuII atom lies on a crystallographic inversion center and exhibits an octa­hedral coordination defined by two O atoms from water mol­ecules in the axial positions and by four O atoms from two deprotonated coumarin-3-carb­oxy­lic acid ligands in the equatorial positions. The angles around the CuII atom vary between 85.32 (6) and 94.68 (6)°. The Cu—O bond distances between the CuII atom and the O atoms vary between 1.9424 (14) and 2.3229 (15) Å. The layers inter­digitate via face-to-face aromatic inter­actions [3.6490 (8) Å] between coumarin moieties such that the inter­layer separation is 10.460 (2) Å, i.e. the length of the c axis. O—H⋯O hydrogen bonds between the H atoms of coordinated water mol­ecules and the O atoms of carboxyl­ate groups link the complex mol­ecules into layers parallel to the ab plane.

Related literature

For background to topological networks, see: Laza­rou et al. (2011 ▶). For applications of copper(II) complexes, see: Eddaoudi et al. (2001 ▶); Kirillov et al. (2010 ▶); Konidaris et al. (2009 ▶). For related structures, see: Wang et al. (2011 ▶).graphic file with name e-67-0m782-scheme1.jpg

Experimental

Crystal data

  • [Cu(C10H5O4)2(H2O)2]

  • M r = 477.86

  • Triclinic, Inline graphic

  • a = 6.5884 (13) Å

  • b = 6.8296 (14) Å

  • c = 10.460 (2) Å

  • α = 85.98 (3)°

  • β = 89.79 (3)°

  • γ = 65.38 (3)°

  • V = 426.65 (15) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 1.35 mm−1

  • T = 293 K

  • 0.20 × 0.15 × 0.15 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.785, T max = 0.817

  • 2696 measured reflections

  • 1954 independent reflections

  • 1926 reflections with I > 2σ(I)

  • R int = 0.014

Refinement

  • R[F 2 > 2σ(F 2)] = 0.026

  • wR(F 2) = 0.080

  • S = 1.10

  • 1954 reflections

  • 146 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.47 e Å−3

  • Δρmin = −0.59 e Å−3

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018708/zk2008sup1.cif

e-67-0m782-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018708/zk2008Isup2.hkl

e-67-0m782-Isup2.hkl (96.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1W—H1WA⋯O4i 0.82 1.89 2.706 (2) 177
O1W—H1WB⋯O4ii 0.88 (3) 1.90 (3) 2.753 (2) 163 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the National Natural Science Foundation of China (No. 21075114), the Special Environmental Protection Fund for Public Welfare project (201009015) and the Funding Project for Academic Human Resources Development in Institutions of Higher Learning under the jurisdiction of the Beijing Municipality (PHR 201107104).

supplementary crystallographic information

Comment

In the past decades, numerous papers dealing with copper(II) complexes have been published due to their fascinating structural diversity (Lazarou et al., 2011) and potential applications in the areas of catalysis (Kirillov et al., 2010), gas addsorption (Eddaoudi et al., 2001), magnetism (Konidaris et al., 2009) and so on. Herein, we report the synthesis and crystal structure of a new mononuclear copper complex coordinated by coumarin-3-carboxylic acid.

In the title compound, [Cu(C10H5O4)2(H2O)2], copper(II) atom lies on a crystallographic inversion center and exhibits octahedral geometry with the coordination of two O atoms from water molecules in the axial positions and four O atoms from two deprotonated coumarin-3-carboxylic acid ligands in the equatorial positions. Angles around the CuII atom vary between 85.32 (6)° and 94.68 (6)°. The Cu—O bond distances between the CuII atom and the O atoms vary between 1.9424 (14) and 2.3229 (15) Å, all of which are comparable to those reported for other copper-oxygen donor complexes (e.g., Wang et al., 2011). The (C2C1C3C4C5C6) ring and the (C4C3C7C9C8O2) ring are almost coplanar, and the dihedral angles is 1.568 (57)°. The layers interdigitate via face to face aromatic interactions (distance 3.6490 (8) Å) between coumarin moieties such that the interlayer separation is 10.46 Å, length of c axis. O—H···O hydrogen bonds between the hydrogen atoms of coordinated water molecules and the O atoms of carboxylate groups joins the complexes into two-dimensional layers parallel the ab plane (Table 1 and Fig. 2).

Experimental

The title complex was synthesized by carefully layering a solution of Cu(NO3)2.3H2O (24.2 mg, 0.1 mmol) in ethanol (10 ml) on top of a solution of coumarin-3-carboxylic acid (19.0 mg, 0.1 mmol) and LiOH (8.4 mg, 0.2 mmol) in H2O (10 ml) in a test-tube. After about one month at room temperature, green block-shaped single crystals suitable for X-ray investigation appeared at the boundary between the ethanol solution and the water layer with a yield of 25% (12.1 mg). FT—IR (KBr, cm-1): 788, 1028, 1183, 1285, 1388, 1457, 1560, 1697, 3180.

Refinement

Carbon H atoms were placed geometrically (C—H = 0.93 Å) and treated as riding with Uiso(H) = 1.2Ueq(C). Water H atoms were located in calculated positions and treated in the subsequent refinement as riding atoms, with O—H = 0.85 Å and Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level for non-hydrogen atoms, hydrogen atoms are shown as small circles of arbitrary radius. [Symmetry code: i = -x + 1, -y, -z + 1].

Fig. 2.

Fig. 2.

Partial packing view of title compound, showing the formation of network built from hydrogen bonds.

Crystal data

[Cu(C10H5O4)2(H2O)2] Z = 1
Mr = 477.86 F(000) = 243
Triclinic, P1 Dx = 1.860 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.5884 (13) Å Cell parameters from 2273 reflections
b = 6.8296 (14) Å θ = 3.3–28.3°
c = 10.460 (2) Å µ = 1.35 mm−1
α = 85.98 (3)° T = 293 K
β = 89.79 (3)° Block, green
γ = 65.38 (3)° 0.20 × 0.15 × 0.15 mm
V = 426.65 (15) Å3

Data collection

Bruker APEXII CCD diffractometer 1954 independent reflections
Radiation source: fine-focus sealed tube 1926 reflections with I > 2σ(I)
graphite Rint = 0.014
φ and ω scans θmax = 28.3°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) h = −8→8
Tmin = 0.785, Tmax = 0.817 k = −6→8
2696 measured reflections l = −12→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080 H atoms treated by a mixture of independent and constrained refinement
S = 1.10 w = 1/[σ2(Fo2) + (0.0426P)2 + 0.4127P] where P = (Fo2 + 2Fc2)/3
1954 reflections (Δ/σ)max < 0.001
146 parameters Δρmax = 0.47 e Å−3
0 restraints Δρmin = −0.59 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.5000 0.0000 0.5000 0.00966 (11)
O1 0.4519 (2) 0.1657 (2) 0.69122 (12) 0.0146 (3)
O1W 0.4903 (2) −0.2639 (2) 0.59038 (12) 0.0126 (3)
H1WA 0.3929 −0.2900 0.5568 0.019*
O3 0.1764 (2) 0.1397 (2) 0.48277 (12) 0.0124 (3)
O4 −0.1736 (2) 0.3644 (2) 0.51356 (12) 0.0127 (3)
O2 0.3051 (2) 0.1949 (2) 0.88105 (12) 0.0122 (3)
C1 −0.2504 (3) 0.2859 (3) 1.00004 (18) 0.0135 (3)
H1A −0.3904 0.3043 0.9699 0.016*
C2 −0.2116 (3) 0.2857 (3) 1.13001 (18) 0.0155 (4)
H2A −0.3264 0.3068 1.1869 0.019*
C3 −0.0782 (3) 0.2581 (3) 0.91346 (17) 0.0112 (3)
C4 0.1306 (3) 0.2267 (3) 0.96207 (17) 0.0113 (3)
C5 0.1731 (3) 0.2237 (3) 1.09260 (17) 0.0139 (3)
H5A 0.3138 0.2019 1.1231 0.017*
C6 0.0000 (3) 0.2539 (3) 1.17600 (17) 0.0154 (4)
H6A 0.0249 0.2530 1.2635 0.019*
C7 −0.1071 (3) 0.2648 (3) 0.77726 (17) 0.0111 (3)
H7A −0.2457 0.2871 0.7429 0.013*
C8 0.2831 (3) 0.1975 (3) 0.75042 (17) 0.0110 (3)
C9 0.0633 (3) 0.2392 (3) 0.69730 (17) 0.0103 (3)
C10 0.0214 (3) 0.2495 (3) 0.55452 (17) 0.0103 (3)
H1WB 0.614 (5) −0.377 (5) 0.577 (3) 0.035 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.00616 (16) 0.01127 (16) 0.00921 (16) −0.00141 (11) 0.00012 (10) −0.00028 (11)
O1 0.0097 (6) 0.0224 (7) 0.0120 (6) −0.0065 (5) 0.0005 (5) −0.0029 (5)
O1W 0.0094 (6) 0.0135 (6) 0.0130 (6) −0.0029 (5) −0.0002 (5) −0.0003 (5)
O3 0.0089 (6) 0.0157 (6) 0.0103 (6) −0.0025 (5) −0.0001 (5) −0.0018 (5)
O4 0.0086 (6) 0.0143 (6) 0.0127 (6) −0.0022 (5) −0.0018 (5) −0.0006 (5)
O2 0.0096 (6) 0.0166 (6) 0.0098 (6) −0.0050 (5) −0.0007 (5) −0.0010 (5)
C1 0.0118 (8) 0.0129 (8) 0.0143 (8) −0.0039 (6) 0.0025 (7) −0.0001 (6)
C2 0.0183 (9) 0.0130 (8) 0.0132 (8) −0.0046 (7) 0.0052 (7) −0.0004 (6)
C3 0.0112 (8) 0.0095 (7) 0.0113 (8) −0.0029 (6) 0.0010 (6) −0.0004 (6)
C4 0.0121 (8) 0.0096 (7) 0.0106 (8) −0.0030 (6) 0.0017 (6) −0.0007 (6)
C5 0.0157 (9) 0.0124 (8) 0.0120 (8) −0.0044 (7) −0.0032 (7) 0.0000 (6)
C6 0.0221 (10) 0.0123 (8) 0.0097 (8) −0.0050 (7) 0.0005 (7) −0.0005 (6)
C7 0.0094 (8) 0.0104 (8) 0.0122 (8) −0.0031 (6) −0.0005 (6) −0.0003 (6)
C8 0.0113 (8) 0.0102 (7) 0.0103 (8) −0.0033 (6) −0.0012 (6) −0.0006 (6)
C9 0.0091 (8) 0.0100 (7) 0.0107 (8) −0.0030 (6) −0.0009 (6) −0.0005 (6)
C10 0.0092 (8) 0.0099 (7) 0.0117 (8) −0.0039 (6) 0.0007 (6) −0.0001 (6)

Geometric parameters (Å, °)

Cu1—O3i 1.9424 (14) C1—C3 1.408 (2)
Cu1—O3 1.9424 (14) C1—H1A 0.9300
Cu1—O1Wi 2.0007 (14) C2—C6 1.400 (3)
Cu1—O1W 2.0007 (14) C2—H2A 0.9300
Cu1—O1 2.3229 (15) C3—C4 1.393 (3)
Cu1—O1i 2.3229 (15) C3—C7 1.433 (2)
O1—C8 1.216 (2) C4—C5 1.392 (2)
O1W—H1WA 0.8200 C5—C6 1.388 (3)
O1W—H1WB 0.88 (3) C5—H5A 0.9300
O3—C10 1.266 (2) C6—H6A 0.9300
O4—C10 1.251 (2) C7—C9 1.357 (2)
O2—C8 1.373 (2) C7—H7A 0.9300
O2—C4 1.377 (2) C8—C9 1.459 (2)
C1—C2 1.384 (3) C9—C10 1.511 (2)
O3i—Cu1—O3 180.0 C6—C2—H2A 119.9
O3i—Cu1—O1Wi 91.47 (6) C4—C3—C1 118.49 (16)
O3—Cu1—O1Wi 88.53 (6) C4—C3—C7 118.02 (16)
O3i—Cu1—O1W 88.53 (6) C1—C3—C7 123.47 (17)
O3—Cu1—O1W 91.47 (6) O2—C4—C5 117.36 (16)
O1Wi—Cu1—O1W 180.0 O2—C4—C3 120.44 (16)
O3i—Cu1—O1 94.68 (6) C5—C4—C3 122.19 (17)
O3—Cu1—O1 85.32 (6) C6—C5—C4 118.29 (18)
O1Wi—Cu1—O1 88.76 (6) C6—C5—H5A 120.9
O1W—Cu1—O1 91.24 (6) C4—C5—H5A 120.9
O3i—Cu1—O1i 85.32 (6) C5—C6—C2 120.83 (17)
O3—Cu1—O1i 94.68 (6) C5—C6—H6A 119.6
O1Wi—Cu1—O1i 91.24 (6) C2—C6—H6A 119.6
O1W—Cu1—O1i 88.76 (6) C9—C7—C3 121.45 (17)
O1—Cu1—O1i 180.0 C9—C7—H7A 119.3
C8—O1—Cu1 118.65 (12) C3—C7—H7A 119.3
Cu1—O1W—H1WA 109.5 O1—C8—O2 115.47 (16)
Cu1—O1W—H1WB 110 (2) O1—C8—C9 127.02 (16)
H1WA—O1W—H1WB 103.7 O2—C8—C9 117.51 (15)
C10—O3—Cu1 134.40 (12) C7—C9—C8 119.69 (16)
C8—O2—C4 122.81 (14) C7—C9—C10 118.84 (16)
C2—C1—C3 120.02 (18) C8—C9—C10 121.45 (15)
C2—C1—H1A 120.0 O4—C10—O3 122.88 (16)
C3—C1—H1A 120.0 O4—C10—C9 116.53 (15)
C1—C2—C6 120.16 (17) O3—C10—C9 120.53 (16)
C1—C2—H2A 119.9
O3i—Cu1—O1—C8 −149.14 (14) C1—C2—C6—C5 0.5 (3)
O3—Cu1—O1—C8 30.86 (14) C4—C3—C7—C9 0.7 (3)
O1Wi—Cu1—O1—C8 119.49 (14) C1—C3—C7—C9 179.37 (17)
O1W—Cu1—O1—C8 −60.51 (14) Cu1—O1—C8—O2 149.88 (11)
O1Wi—Cu1—O3—C10 −95.25 (17) Cu1—O1—C8—C9 −30.6 (2)
O1W—Cu1—O3—C10 84.75 (17) C4—O2—C8—O1 −179.60 (15)
O1—Cu1—O3—C10 −6.37 (17) C4—O2—C8—C9 0.9 (2)
O1i—Cu1—O3—C10 173.63 (17) C3—C7—C9—C8 1.8 (3)
C3—C1—C2—C6 −1.2 (3) C3—C7—C9—C10 −179.55 (15)
C2—C1—C3—C4 1.2 (3) O1—C8—C9—C7 177.91 (18)
C2—C1—C3—C7 −177.46 (16) O2—C8—C9—C7 −2.6 (2)
C8—O2—C4—C5 −179.00 (15) O1—C8—C9—C10 −0.7 (3)
C8—O2—C4—C3 1.7 (3) O2—C8—C9—C10 178.83 (15)
C1—C3—C4—O2 178.78 (15) Cu1—O3—C10—O4 163.62 (13)
C7—C3—C4—O2 −2.5 (3) Cu1—O3—C10—C9 −19.1 (3)
C1—C3—C4—C5 −0.5 (3) C7—C9—C10—O4 28.9 (2)
C7—C3—C4—C5 178.26 (16) C8—C9—C10—O4 −152.53 (17)
O2—C4—C5—C6 −179.54 (16) C7—C9—C10—O3 −148.55 (17)
C3—C4—C5—C6 −0.2 (3) C8—C9—C10—O3 30.0 (2)
C4—C5—C6—C2 0.3 (3)

Symmetry codes: (i) −x+1, −y, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1W—H1WA···O4ii 0.82 1.89 2.706 (2) 177
O1W—H1WB···O4iii 0.88 (3) 1.90 (3) 2.753 (2) 163 (3)

Symmetry codes: (ii) −x, −y, −z+1; (iii) x+1, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZK2008).

References

  1. Bruker (2008). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Eddaoudi, M., Kim, J., Wachter, J. B., Chae, H. K., O’Keeffe, M. & Yaghi, O. M. (2001). J. Am. Chem. Soc. 123, 4368–4369. [DOI] [PubMed]
  3. Kirillov, A. M., Coelho, J. A. S., Kirillov, M. V., Guedes da Silva, M. F. C., Nesterov, D. S., Gruenwald, K. R., Haukka, M. & Pombeiro, A. J. L. (2010). Inorg. Chem. 49, 6390–6392. [DOI] [PubMed]
  4. Konidaris, K. F., Papaefstathiou, G. S., Aromi, G., Teat, S. J., Manessi-Zoupa, E., Escuer, A. & Perlepes, S. P. (2009). Polyhedron, 28, 1646–1651.
  5. Lazarou, K. N., Psycharis, V., Terzis, A. & Raptopoulou, C. P. (2011). Polyhedron, 30, 963–970.
  6. Sheldrick, G. M. (2008a). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008b). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Wang, X. L., Lin, H. Y., Mu, B., Tian, A. X., Liu, G. C. & Hu, N. H. (2011). CrystEngComm, 13, 1990–1997.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018708/zk2008sup1.cif

e-67-0m782-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018708/zk2008Isup2.hkl

e-67-0m782-Isup2.hkl (96.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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