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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 May 14;67(Pt 6):m758. doi: 10.1107/S1600536811017685

trans-Dichloridobis[(6-nicotinoyl-2-pyridyl-κN 6)(3-pyridyl-κN)methanone]copper(II)

Hong Qiang a,*, Fan Zhang a
PMCID: PMC3120631  PMID: 21754646

Abstract

In the title complex, [CuCl2(C17H11N3O2)2], the CuII ion is located on an inversion center. It exhibits a distorted octa­hedral coordination geometry defined by two chloride anions at trans sites and four 3-pyridyl N atoms at equatorial sites from two (6-nicotinoyl-2-pyrid­yl)(3-pyrid­yl)methanone ligands. The (6-nicotinoyl-2-pyrid­yl)(3-pyrid­yl)methanone ligand can be viewed as having two pendant 3-pyridyl rings attached to a central pyridyl skeleton via separate carbonyl bridges, acting in a κ2 N,N′-chelating mode with its 3-pyridyl N atoms bound to the CuII ion. The pendant 3-pyridyl rings make a dihedral angle of 80.76 (5)°. In the crystal, mol­ecules are linked through inter­molecular C—H⋯π and C—H⋯O inter­actions, forming a three-dimentional framework.

Related literature

For transition metal complexes with di-pyrid-2-yl ketone, see: Papaefstathiou & Perlepes (2002 ▶); Efthymiou et al. (2006 ▶). For the crystal structure of an analogous CuII complex, see: Wan et al. (2008 ▶). For C—H⋯π inter­actions, see: Umezawa et al. (1998 ▶).graphic file with name e-67-0m758-scheme1.jpg

Experimental

Crystal data

  • [CuCl2(C17H11N3O2)2]

  • M r = 713.02

  • Monoclinic, Inline graphic

  • a = 18.728 (3) Å

  • b = 11.8971 (18) Å

  • c = 16.695 (3) Å

  • β = 121.522 (3)°

  • V = 3170.9 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.91 mm−1

  • T = 293 K

  • 0.40 × 0.30 × 0.30 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.848, T max = 1.000

  • 11215 measured reflections

  • 3937 independent reflections

  • 3361 reflections with I > 2σ(I)

  • R int = 0.020

Refinement

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.084

  • S = 1.04

  • 3937 reflections

  • 215 parameters

  • H-atom parameters constrained

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017685/zq2102sup1.cif

e-67-0m758-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017685/zq2102Isup2.hkl

e-67-0m758-Isup2.hkl (193.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C13–C17,N3 ring.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C13—H13A⋯O1i 0.93 2.61 3.418 (2) 146
C2—H2A⋯Cg1ii 0.93 2.73 3.621 (3) 162

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are grateful for financial support from the Science and Technology program, Beijing Municipal Education Commission.

supplementary crystallographic information

Comment

Di-pyridin-2-yl-methanone (di-pyrid-2-yl ketone, DPK), (C5H4N)2CO, is an extraordinarily versatile ligand among the thousands of basic building blocks that have been used in coordination chemistry and materials science (Papaefstathiou & Perlepes, 2002; Efthymiou et al., 2006). Herein, we report the mononuclear CuII complex with the oligo-pyridyl ketone ligand (6-nicotinoyl-2-pyridyl)(3-pyridyl)methanone (abbreviated as L), a member of the pyridinylmethanone family.

In the crystal structure of the title complex, the center CuII adopts an octahedral coordination geometry with two chlorido depositing in trans to each other, and two 2,6-pyridinediylbis(3-pyridinyl)methanone ligands bound to the ion by four 3-pyridyl N atoms (Fig. 1). The Cu1—N3 and Cu1—Cl1 bond lengths equal 2.0412 (12) Å and 2.3087 (4) Å, respectively, while the Cu-N1 exhibits weak bonding with the Cu-N1 distance of 2.615 (1) Å. The latter Cu—N bonds are remarkably longer than that (about 2.03 Å) in the similar complex Cu(L)2(BF4)2 (Wan et al. 2008). The pendant 3-pyridyl rings exhibit a dihedral angle of 80.76 (5)°. The mononuclear complex units link each other through the intermolecular C2—H2A···π and C13—H13A···O1ii interactions to form a three-dimentional framework, as shown in Fig. 2. For the C—H···π interaction (Umezawa et al. 1998), the C2···Cg1 distance (where Cg1 is the centroid of the ring containing N3i; i: -x+1, -y, 0.5-z) is 3.621 (3) Å, and the C2—H2A···Cg1 angle is 161.8° . For the C—H···O interaction, the C13···O1ii distance is 3.418 (2) Å, and the C13—H13A···O1ii angle is 146.2° (ii: x+0.5, y-0.5, z).

Experimental

The (6-nicotinoyl-2-pyridyl)(3-pyridyl)methanone ligand was obtained following the reaction procedure as reported in literature (Wan et al., 2008). Reaction of (6-nicotinoyl-2-pyridyl)(3-pyridyl)methanone (29 mg, 0.1 mmol) with CuCl2 (7 mg, 0.05 mmol) in acetonitrile formed trans-[Cu(C17H11N3O2)2Cl2] as a blue solution, which was left stand in air for four days to obtain block-like crystals (yield 13.1mg, 61%).

Refinement

The hydrogen atoms were placed in idealized positions and allowed to ride on the relevant carbon atoms, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The atom-numbering scheme of the title complex (symmetry code: (i) -x+1.5, -y+0.5, -z+1.5) with red-dashed lines indicating weak Cu1-N1 bonding. Displacement ellipsoids are drawn at the 50% probability level and H atoms are omitted for clarity.

Fig. 2.

Fig. 2.

View of the crystal packing of the title compound.

Crystal data

[CuCl2(C17H11N3O2)2] Z = 4
Mr = 713.02 F(000) = 1452
Monoclinic, C2/c Dx = 1.494 Mg m−3
Hall symbol: -C 2yc Mo Kα radiation, λ = 0.71073 Å
a = 18.728 (3) Å µ = 0.91 mm−1
b = 11.8971 (18) Å T = 293 K
c = 16.695 (3) Å Block, blue
β = 121.522 (3)° 0.40 × 0.30 × 0.30 mm
V = 3170.9 (8) Å3

Data collection

Bruker APEXII CCD area-detector diffractometer 3937 independent reflections
Radiation source: fine-focus sealed tube 3361 reflections with I > 2σ(I)
graphite Rint = 0.020
ω scans θmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2007) h = −24→24
Tmin = 0.848, Tmax = 1.000 k = −15→15
11215 measured reflections l = −19→22

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029 H-atom parameters constrained
wR(F2) = 0.084 w = 1/[σ2(Fo2) + (0.0423P)2 + 2.1803P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max = 0.001
3937 reflections Δρmax = 0.25 e Å−3
215 parameters Δρmin = −0.21 e Å−3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.00079 (17)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.7500 0.2500 0.5000 0.03142 (9)
Cl1 0.69747 (3) 0.11938 (3) 0.38011 (3) 0.03905 (11)
O2 0.77486 (11) 0.74717 (10) 0.35782 (15) 0.0670 (5)
C12 0.73237 (11) 0.67642 (13) 0.36615 (13) 0.0423 (4)
C1 0.45389 (14) 0.2790 (2) 0.33217 (19) 0.0666 (6)
H1A 0.4120 0.2267 0.2971 0.080*
C2 0.43565 (12) 0.39132 (18) 0.32729 (16) 0.0588 (5)
H2A 0.3811 0.4166 0.2878 0.071*
C3 0.49909 (10) 0.46676 (15) 0.38157 (12) 0.0404 (4)
C4 0.57867 (10) 0.42349 (14) 0.44252 (12) 0.0386 (3)
H4A 0.6207 0.4729 0.4830 0.046*
N1 0.59789 (9) 0.31499 (12) 0.44589 (11) 0.0464 (3)
C5 0.53567 (13) 0.24547 (15) 0.39018 (18) 0.0571 (5)
H5A 0.5483 0.1698 0.3905 0.069*
C6 0.47982 (11) 0.58898 (16) 0.37172 (13) 0.0453 (4)
O1 0.41059 (9) 0.62239 (13) 0.35012 (13) 0.0676 (4)
C7 0.54433 (11) 0.67304 (14) 0.38234 (13) 0.0432 (4)
C8 0.53320 (14) 0.78598 (18) 0.39550 (17) 0.0602 (5)
H8A 0.4891 0.8084 0.4023 0.072*
C9 0.58907 (15) 0.86377 (16) 0.39825 (18) 0.0657 (6)
H9A 0.5826 0.9397 0.4062 0.079*
C10 0.65408 (13) 0.82833 (15) 0.38923 (14) 0.0520 (5)
H10A 0.6924 0.8795 0.3908 0.062*
C11 0.66154 (11) 0.71359 (13) 0.37759 (12) 0.0394 (4)
N2 0.60753 (9) 0.63678 (11) 0.37358 (10) 0.0378 (3)
N3 0.76337 (8) 0.36519 (10) 0.41813 (9) 0.0300 (3)
C14 0.74131 (10) 0.47290 (12) 0.41611 (11) 0.0314 (3)
H14A 0.7177 0.4935 0.4510 0.038*
C15 0.75214 (10) 0.55503 (12) 0.36437 (11) 0.0338 (3)
C16 0.78887 (11) 0.52392 (15) 0.31374 (12) 0.0419 (4)
H16A 0.7983 0.5770 0.2794 0.050*
C17 0.81099 (11) 0.41376 (15) 0.31523 (13) 0.0431 (4)
H17A 0.8353 0.3914 0.2815 0.052*
C13 0.79703 (10) 0.33587 (14) 0.36711 (11) 0.0368 (3)
H13A 0.8113 0.2611 0.3667 0.044*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.04854 (17) 0.01975 (13) 0.03224 (15) −0.00100 (10) 0.02548 (13) 0.00062 (9)
Cl1 0.0554 (2) 0.02824 (18) 0.0347 (2) −0.00295 (15) 0.02439 (18) −0.00262 (14)
O2 0.0755 (10) 0.0343 (7) 0.1049 (14) −0.0040 (6) 0.0566 (10) 0.0174 (7)
C12 0.0487 (9) 0.0296 (7) 0.0459 (9) −0.0008 (7) 0.0230 (8) 0.0109 (7)
C1 0.0446 (11) 0.0549 (12) 0.0815 (16) −0.0138 (9) 0.0198 (11) −0.0136 (11)
C2 0.0344 (9) 0.0595 (12) 0.0661 (13) 0.0007 (8) 0.0149 (9) −0.0019 (10)
C3 0.0366 (8) 0.0426 (9) 0.0436 (9) 0.0033 (7) 0.0221 (7) 0.0027 (7)
C4 0.0371 (8) 0.0365 (8) 0.0390 (8) −0.0007 (6) 0.0177 (7) 0.0016 (6)
N1 0.0412 (8) 0.0358 (7) 0.0534 (9) 0.0007 (6) 0.0186 (7) 0.0041 (6)
C5 0.0498 (11) 0.0376 (10) 0.0752 (15) −0.0054 (8) 0.0266 (11) −0.0042 (9)
C6 0.0433 (9) 0.0466 (9) 0.0468 (10) 0.0112 (8) 0.0242 (8) 0.0031 (8)
O1 0.0517 (8) 0.0637 (9) 0.0945 (12) 0.0184 (7) 0.0432 (9) 0.0034 (8)
C7 0.0444 (9) 0.0361 (8) 0.0428 (9) 0.0093 (7) 0.0185 (8) 0.0022 (7)
C8 0.0609 (13) 0.0440 (10) 0.0716 (14) 0.0169 (9) 0.0318 (11) −0.0033 (10)
C9 0.0750 (15) 0.0305 (9) 0.0796 (15) 0.0102 (9) 0.0320 (13) −0.0070 (9)
C10 0.0630 (12) 0.0273 (8) 0.0548 (11) −0.0004 (8) 0.0233 (10) 0.0011 (7)
C11 0.0489 (9) 0.0264 (7) 0.0365 (8) 0.0033 (6) 0.0178 (7) 0.0052 (6)
N2 0.0430 (7) 0.0279 (6) 0.0397 (7) 0.0055 (5) 0.0196 (6) 0.0041 (5)
N3 0.0373 (7) 0.0248 (5) 0.0326 (6) 0.0011 (5) 0.0214 (6) 0.0023 (5)
C14 0.0374 (7) 0.0264 (7) 0.0343 (7) 0.0021 (6) 0.0213 (6) 0.0036 (6)
C15 0.0366 (8) 0.0284 (7) 0.0352 (8) −0.0024 (6) 0.0179 (6) 0.0052 (6)
C16 0.0462 (9) 0.0437 (9) 0.0407 (9) −0.0072 (7) 0.0262 (8) 0.0073 (7)
C17 0.0491 (10) 0.0495 (9) 0.0438 (9) −0.0021 (8) 0.0335 (8) −0.0011 (7)
C13 0.0428 (9) 0.0332 (7) 0.0394 (8) 0.0019 (6) 0.0251 (7) −0.0011 (6)

Geometric parameters (Å, °)

Cu1—N3 2.0412 (12) C7—N2 1.338 (2)
Cu1—N3i 2.0412 (12) C7—C8 1.395 (3)
Cu1—Cl1 2.3087 (4) C8—C9 1.380 (3)
Cu1—Cl1i 2.3087 (4) C8—H8A 0.9300
O2—C12 1.215 (2) C9—C10 1.369 (3)
C12—C15 1.495 (2) C9—H9A 0.9300
C12—C11 1.502 (3) C10—C11 1.396 (2)
C1—C2 1.371 (3) C10—H10A 0.9300
C1—C5 1.376 (3) C11—N2 1.339 (2)
C1—H1A 0.9300 N3—C14 1.3415 (18)
C2—C3 1.383 (3) N3—C13 1.3438 (19)
C2—H2A 0.9300 C14—C15 1.3875 (19)
C3—C4 1.391 (2) C14—H14A 0.9300
C3—C6 1.487 (2) C15—C16 1.390 (2)
C4—N1 1.333 (2) C16—C17 1.371 (2)
C4—H4A 0.9300 C16—H16A 0.9300
N1—C5 1.332 (2) C17—C13 1.383 (2)
C5—H5A 0.9300 C17—H17A 0.9300
C6—O1 1.217 (2) C13—H13A 0.9300
C6—C7 1.506 (3)
N3—Cu1—N3i 180.0 C9—C8—C7 118.57 (19)
N3—Cu1—Cl1 90.99 (4) C9—C8—H8A 120.7
N3i—Cu1—Cl1 89.01 (4) C7—C8—H8A 120.7
N3—Cu1—Cl1i 89.01 (4) C10—C9—C8 119.50 (18)
N3i—Cu1—Cl1i 90.99 (4) C10—C9—H9A 120.2
Cl1—Cu1—Cl1i 180.0 C8—C9—H9A 120.2
O2—C12—C15 118.88 (17) C9—C10—C11 118.42 (19)
O2—C12—C11 119.02 (16) C9—C10—H10A 120.8
C15—C12—C11 122.10 (14) C11—C10—H10A 120.8
C2—C1—C5 118.40 (19) N2—C11—C10 123.12 (17)
C2—C1—H1A 120.8 N2—C11—C12 119.14 (14)
C5—C1—H1A 120.8 C10—C11—C12 117.71 (16)
C1—C2—C3 119.45 (18) C7—N2—C11 117.58 (14)
C1—C2—H2A 120.3 C14—N3—C13 118.19 (13)
C3—C2—H2A 120.3 C14—N3—Cu1 120.94 (10)
C2—C3—C4 117.64 (17) C13—N3—Cu1 120.84 (10)
C2—C3—C6 119.12 (16) N3—C14—C15 123.02 (14)
C4—C3—C6 123.23 (16) N3—C14—H14A 118.5
N1—C4—C3 123.46 (16) C15—C14—H14A 118.5
N1—C4—H4A 118.3 C14—C15—C16 118.09 (14)
C3—C4—H4A 118.3 C14—C15—C12 123.33 (14)
C5—N1—C4 116.97 (16) C16—C15—C12 118.41 (14)
N1—C5—C1 123.86 (18) C17—C16—C15 118.97 (14)
N1—C5—H5A 118.1 C17—C16—H16A 120.5
C1—C5—H5A 118.1 C15—C16—H16A 120.5
O1—C6—C3 120.78 (18) C16—C17—C13 119.84 (15)
O1—C6—C7 118.89 (17) C16—C17—H17A 120.1
C3—C6—C7 120.22 (15) C13—C17—H17A 120.1
N2—C7—C8 122.80 (18) N3—C13—C17 121.86 (15)
N2—C7—C6 118.31 (15) N3—C13—H13A 119.1
C8—C7—C6 118.79 (17) C17—C13—H13A 119.1
C5—C1—C2—C3 −1.2 (4) O2—C12—C11—C10 −7.4 (3)
C1—C2—C3—C4 −2.9 (3) C15—C12—C11—C10 172.79 (16)
C1—C2—C3—C6 176.4 (2) C8—C7—N2—C11 −0.2 (3)
C2—C3—C4—N1 5.2 (3) C6—C7—N2—C11 176.08 (15)
C6—C3—C4—N1 −174.07 (17) C10—C11—N2—C7 −0.8 (3)
C3—C4—N1—C5 −3.0 (3) C12—C11—N2—C7 −178.81 (15)
C4—N1—C5—C1 −1.6 (3) Cl1—Cu1—N3—C14 136.92 (12)
C2—C1—C5—N1 3.7 (4) Cl1i—Cu1—N3—C14 −43.08 (12)
C2—C3—C6—O1 30.2 (3) Cl1—Cu1—N3—C13 −45.23 (12)
C4—C3—C6—O1 −150.5 (2) Cl1i—Cu1—N3—C13 134.77 (12)
C2—C3—C6—C7 −145.85 (19) C13—N3—C14—C15 −0.4 (2)
C4—C3—C6—C7 33.5 (3) Cu1—N3—C14—C15 177.50 (11)
O1—C6—C7—N2 −157.20 (19) N3—C14—C15—C16 −1.1 (2)
C3—C6—C7—N2 18.9 (3) N3—C14—C15—C12 −176.31 (15)
O1—C6—C7—C8 19.2 (3) O2—C12—C15—C14 146.67 (19)
C3—C6—C7—C8 −164.64 (18) C11—C12—C15—C14 −33.5 (2)
N2—C7—C8—C9 1.0 (3) O2—C12—C15—C16 −28.5 (3)
C6—C7—C8—C9 −175.3 (2) C11—C12—C15—C16 151.27 (16)
C7—C8—C9—C10 −0.8 (4) C14—C15—C16—C17 1.5 (2)
C8—C9—C10—C11 −0.1 (3) C12—C15—C16—C17 176.90 (16)
C9—C10—C11—N2 0.9 (3) C15—C16—C17—C13 −0.4 (3)
C9—C10—C11—C12 178.98 (19) C14—N3—C13—C17 1.6 (2)
O2—C12—C11—N2 170.73 (18) Cu1—N3—C13—C17 −176.35 (13)
C15—C12—C11—N2 −9.1 (2) C16—C17—C13—N3 −1.2 (3)

Symmetry codes: (i) −x+3/2, −y+1/2, −z+1.

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C13–C17,N3 ring.
D—H···A D—H H···A D···A D—H···A
C13—H13A···O1ii 0.93 2.61 3.418 (2) 146
C2—H2A···Cg1iii 0.93 2.73 3.621 (3) 162

Symmetry codes: (ii) x+1/2, y−1/2, z; (iii) −x+1, y, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2102).

References

  1. Bruker (2007). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Efthymiou, C. G., Raptopoulou, C. P., Terzis, A., Boca, R., Korabic, M., Mrozinski, J., Perlepes, S. P. & Bakalbassis, E. G. (2006). Eur. J. Inorg. Chem. 11, 2236–2252.
  3. Papaefstathiou, G. S. & Perlepes, S. P. (2002). Comments Inorg. Chem. 23, 249–274.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  6. Umezawa, Y., Tsuboyama, S., Honda, K., Uzawa, J. & Nishio, M. (1998). Bull. Chem. Soc. Jpn, 71, 1202–1213.
  7. Wan, C. Q., Chen, X. D. & Mak, T. C. W. (2008). CrystEngComm, 10, 475–478.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017685/zq2102sup1.cif

e-67-0m758-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017685/zq2102Isup2.hkl

e-67-0m758-Isup2.hkl (193.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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