Abstract
Studies using dogs provide an ideal solution to the gap in animal models of natural disease and translational medicine. This is evidenced by approximately 400 inherited disorders being characterized in domesticated dogs, most of which are relevant to humans. There are several hundred isolated populations of dogs (breeds) and each has vastly reduced genetic variation compared to humans; this simplifies disease mapping and pharmacogenomics. Dogs age five to eight-fold faster than humans, share environments with their owners, are usually kept until old age, and receive a high level of health care. Farseeing investigators recognized this potential and, over the last decade, developed the necessary tools and infrastructure to utilize this powerful model of human disease, including the sequencing of the dog genome in 2005. Here we review the nascent convergence of genetic and translational canine models of spontaneous disease, focusing on cancer.
Keywords: canine, comparative oncology, dog genome, translational medicine
New Models of Complex Disease Needed
The greatest challenge facing clinical scientists is an incomplete understanding of the genetic basis for complex human diseases [1]. Despite numerous technological advances in genetics, progress has been slow. This is owed, in part, to intricate gene-gene interactions and poorly understood environmental effects [2]. The identification of these interactions and environmental influences is difficult to dissect in humans due to the high level of genetic heterogeneity [3]. Most genome-wide association studies (GWAS) have only identified a small fraction of the genetic basis of complex diseases [4]. And yet disease heritability is critical to understanding disease risk, the effects of environment and lifestyle on disease development, and response to treatment.
Much of the research on human disease genetics relies on animal models. The most frequently used model, the mouse, has several advantages. Mice have short gestation times and are small, making their generation relatively rapid and inexpensive compared to other mammals. Moreover, technologies exist to manipulate the expression of genes in the entire organism or in select cells or tissues [5]. However, mouse models of cancer have limitations. The most notable is that tumors arise spontaneously in humans, but must be induced in most mouse models. Whereas human disease is polygenic, genetic manipulations in mouse models often involve one or a few genes and/or environmental conditions that affect expression of specific genes in an inbred mouse line with undetermined human relevance [3]. Mouse models of cancer in humans are thus missing vast gene networks and interactions that are responsible for, or contribute to, disease in humans. Here we discuss the advantages of tumor-bearing dogs as an alternative model for understanding the genetic basis of human disease [6], highlighting three cancer types as examples.
Advantages of Dog Models
Domesticated dogs (Canis lupus familiaris) are excellent models of human complex diseases for several reasons, including their easy accessibility and prominent status in diverse cultures. For instance, >73 million dogs live in ~40% of households in the USA [7] and 54% of them are considered to be a “family member” [8]. Over 40B (USD) is spent annually on dog health care [8], and is second only to humans in the level of health care received [9]. That, combined with the shared environment of owners and dogs, can be exploited for epidemiological studies of diseases common to dogs and humans.
Next to humans, domesticated dogs have the most phenotypic diversity and known naturally-occurring diseases of all land mammals [10]. For example, the average weight of Chihuahuas and English Mastiffs differs by 65-fold. Dogs share over ~650 Mb of ancestral sequence in common with humans that is absent in mice, and canine DNA and protein sequence is more similar to human than mouse is [11; Fig. 1A]. Analysis of the 13,816 protein coding genes with 1:1:1 orthology in human, mouse and dog showed that the numbers of lineage-specific non-synonymous substitutions (i.e., amino acid changing; KA) are 0.017, 0.038, and 0.021, respectively [11]. Thus, many aspects of human biology are presumably more relevant in dogs than in mice [12]. Approximately 400 inherited diseases similar to those of humans are characterized in dogs, including complex disorders such as cancers, heart disease, and neurological disorders [13, 14]. Indeed, more than 40 naturally occurring canine diseases have mutations in a homologous human gene associated with a similar disease [15]. Additionally, depending on breed size, dogs have a five to eight-fold accelerated aging process compared to humans [http://www.avma.org/animal_health/care_older_pet_faq.asp]. Moreover, dogs are kept as companion animals well into their old age [16, 17]. The most recently available data (2006) shows that ~45% of companion dogs were >6 years old [8], the human equivalent of ~60-95. Thus, dog models hold great promise for accelerating the understanding of genetic and environmental contributions to human disease, particularly those that are chronic or associated with aging.
The greatest advantage of dog models is the result of their evolutionary history which involved at least two severe population bottlenecks [14]. The first occurred when dogs were domesticated from wolves ~15,000-40,000 years ago [18]. The second was most pronounced ~200 years ago when most dog breeds were created by selection of morphological and behavioral traits. Today there are ~400 isolated populations or breeds. Breed creation inadvertently selected many “founder” mutations that are associated with specific traits and diseases; this translates into reduced disease and genetic heterogeneity, consistent with the fact that most breeds are predisposed to a distinct set of diseases. Because linkage disequilibrium is up to 100-fold greater in dogs than humans, single breeds are powerful subjects for broad genetic mapping [14]. By contrast, related breeds that share a trait are powerful subjects for fine mapping. This advantage is illustrated by the recent analysis of polyneuropathy with juvenile onset in dogs, which is similar to human Charcot-Marie-Tooth (CMT) syndrome [19]. The comparison of 7 affected and 17 related unaffected control Greyhounds identified a 19.5 Mb region that was homozygous in the affected dogs, and contained a 10 bp deletion in N-myc downstream regulated 1 (NDRG1), orthologous to a known human CMT gene. Pedigree information and the extended homozygosity suggest that the mutation arose in a popular sire in 1968. Now the disease can be eradicated from the breed through selective breeding, and the dog model can be used to better understand and treat human CMT [19]. Additionally, dogs might provide clues about the “missing heritability” of human complex genetics. Recently, a group of 300 investigators [20] performed a meta-analysis of GWAS (an approach using SNP markers across the entire genomes of many people to find genetic variations associated with a particular disease) of 180,000 individuals characterized for height (known to be 80% heritable). They identified 180 loci that together explain 10% of height heritability. Similarly, Boyko et al. studied 57 quantitative morphological traits in 915 dogs that included samples from 80 breeds; traits included body size and external dimensions, and cranial/dental/long bone size and shape [21]. In contrast to human studies, they found that one to three quantitative trait loci explain the majority of phenotypic variation for most of the dog traits examined. The question now is whether canine complex diseases will turn out to have a similarly simplified genetic architecture.
Cancer Development in Dogs
Dogs are exceptional models of cancer because they naturally develop the same cancers as humans [22]. Indeed, dog tumors are histologically similar to human, and respond similarly to conventional therapies [6]. Although disease course is reported to be more aggressive in dogs than humans for some cancer types [6], it is not clear whether dog cancer is generally more aggressive than human. This issue is complicated because dog cancers are not treated as aggressively as human, and therefore result in shorter survival times and faster evaluations of outcomes. Moreover, disease-bearing dogs tend to present for treatment at later stages than humans. Regardless, the significantly shorter duration time of canine clinical trials is a major advantage [6; Fig. 2]. The disease-free time interval in dogs treated for cancer is 18 months, compared to >7 years needed to assess treatment outcomes in humans [6]. Additionally, many histological types of cancer are associated with similar genetic alterations in humans and dogs. For instance, statistical analysis of genomic alterations in human and dog colorectal tumors showed that samples clustered according to stage, origin and instability status across species [23]. Strikingly, cluster analysis of genome regions affected by DNA copy number alterations showed branching together of human and dog tumors according to colorectal cancer subtypes (vs. species) [23]. This suggests that the same genetic pathways are affected in colorectal tumorigenesis in both species. By contrast, species-specific alterations tended to localize to evolutionarily unstable genome regions. These observations thus hint that the alterations common to both species are more likely to cause cancer than those found in only one (i.e., the latter could be irrelevant species-specific mutation hotspots). In summary, dogs are useful in multiple approaches to cancer investigation [24]: breed-specific risk can be used to discover disease pathways; human cancer pathways can be tested for roles, and targeted for treatment, in canine disease; and canine somatic mutations and genome alterations can be used to narrow down human mutations (Fig. 1B-D). Below we provide three examples of canine-human comparative oncology.
Soft-tissue sarcomas
Soft tissue sarcomas (STS) comprise 1% of all newly diagnosed cancer types in humans [25] and represent a heterogeneous group of mesenchymal neoplasms which demonstrate a high degree of variation in clinical presentation and cellular morphology [26]. These genetically complex cancers include angiosarcomas (hemangiosarcomas in dogs), fibrosarcomas, and histiocytomas. Recent advances in immunohistochemistry, cytogenetics, and molecular genetic analysis have allowed a clinically relevant division of STS to improve diagnosis and treatment [27]. Based on clinical and biological variation among these neoplasms, STS can be broadly dichotomized into two groups. One is characterized by specific, balanced chromosomal translocations, whereas the other typically shows more extensive chromosomal rearrangements leading to recurrent, but non-specific, chromosomal gains and losses [27]. Owing to their complex nature, the specific cells from which most of this group of cancers develop remain largely unknown. Although some strains of mice have developed spontaneous STS, rodent models generally require induction of STS [28]. By contrast, dogs are an excellent model of STS because they have similar tumor genetic complexity to humans [29]. For instance, two poorly differentiated fibrosarcomas taken from Labrador Retrievers had large chromosomal rearrangements, amplifications and deletions similar to those observed in human fibrosarcoma [30]. Notably, these fibrosarcomas had loss of heterozygosity affecting cyclin-dependent kinase family 2A and 2B (CDKN2A/CDKN2B). Given that deletions of CDKN2A and CDKN2B have been reported in other cancer types, including STS in humans, this offers a novel target for discovering common pathways and genes affected in both dogs and humans that affects the development or progression of STS [29].
Another advantage of using canines for studying STS is breed predispositions to specific types of STS, including increased incidences in Flat-Coated Retrievers and Rhodesian Ridgebacks [13]. For example, hemangiosarcomas are relatively common in dogs, accounting for ~5-7% of all observed tumors [31]. The dogs at greatest risk for hemangiosarcoma are Golden Retrievers (GR), German Shepherds, and Boxers [32]. One group recently compared gene expression profiles in hemangiosarcoma tumors from multiple dog breeds [22]. They found that the GR was unique in over-expression of vascular endothelial growth factor 1 (VEGF1) compared to other breeds, whereas VEGF2 was more highly expressed in the other breeds compared to the GR. When VEGF2 expression was blocked in hemangiosarcoma-derived tumor cell lines, the rate of cell growth slowed – except in cell lines derived from GR tumors. This finding implies that the unique genetic background of the GR influenced this breed’s susceptibility to the development of hemangiosarcoma, suggesting that canine tumors can be used to understand how genetic background can influence susceptibility of an individual to non-inherited cancers. Clinical trials involving tyrosine kinase inhibitor (TKI) treatment of STS found that the most effective TKIs (e.g. Sorafenib), also targeted all VEGF isoforms [33]. Performing clinical trials on pedigree dogs, such as the GR, could provide novel information regarding genetic background effects on tumor progression. Thus, given the increased incidence of STS in dogs, the diversity of naturally occurring ‘complex’ and ‘simple’ sarcoma similarity in humans and dogs, and the availability of different genetic backgrounds across breeds for clinical therapy testing, the canine model is more relevant than other animal models for direct human STS applications.
Osteosarcoma
In humans, the most commonly diagnosed primary malignant tumor of the bone is osteosarcoma (OSA). It is the third most frequent cause of cancer in adolescents and represents over 56% of all bone tumors. The prognosis for patients with metastatic OSA is poor, with only 20% surviving event-free for 5 years post-diagnosis [34], and > 30% of patients do not respond to chemotherapy [35]. Roughly 10,000 dogs are diagnosed with OSA yearly in the USA [36], compared to 2,650 new cases of human primary bone cancer [including OSA, Ewing sarcoma, malignant fibrous histiocytoma, and chondrosarcoma; http://www.cancer.gov/cancertopics/types/bone/]. Because there is no consistent method for reporting cancer in dogs, we estimate OSA incidence is at least 13.9/100,000 [8, 37], as opposed to the actual incidence of 1.02/100,000 in humans (across all ages) [38]. In both humans and dogs, OSA has a bimodal age distribution and the main cause of death is pulmonary metastasis. It accounts for 85% of malignancies originating in the bone [39] in large and giant dog breeds [40], which have an OSA risk 61 times higher than all breeds [32]. The canine disease is much more aggressive than the human, with surgical treatment alone producing a 5% survival rate [36]. The same treatments for OSA are used in both humans and dogs [41]. Dogs develop OSA at similar sites as humans and both have similar histology and response to treatment [36, 42]. Indeed, dogs have been a valuable model of OSA since they first participated in clinical trials pioneering limb salvage techniques that are now used in humans [43].
In addition to the similarity of tumor biological behavior of human and dog OSA, recent studies identified parallel genetic features [44]. Both human and canine OSA have a 75% aneuploid DNA index, and both share similar genetic alterations [42]. Moreover, many candidate genes implicated in pediatric OSA have also been implicated in the canine disease: phosphatase and tensin homolog (PTEN), retinoblastoma 1 (RB1), ezrin (EZR), met proto-oncogene (hepatocyte growth factor receptor; MET), v-erb-b2 erythroblastic leukemia viral oncogene homolog 2 (ERBB2), and tumor protein 53 (TP53) [45]. The commonly affected p53 tumor suppressor pathway has similar alterations in human and canine OSA [46]. Because human TP53 is more similar to dog than mouse [47], and because mutations occur naturally in dogs, the canine OSA model is presumably more relevant to humans. Additionally, recent work in dogs focused on differential OSA tumor expression of genes associated with short and long term survival [48]. In experiments using cDNA microarrays, investigators found deregulated expression of the following signaling pathways that were previously reported in human OSA: Wnt, chemokine/cytokine, apoptosis signaling, interleukin, and Ras [48]. Co-expression of hepatocyte growth factor (HGF) and the proto-oncogenic receptor c-Met are implicated in growth, invasion, and metastasis in human OSA. Although more frequently over-expressed in human OSA, another study found co-expression of HGF and c-Met in all 59 OSA canine tumors in the study, with over-expression of both present in 24% of cases [49]. Other investigators identified two genes, interleukin 8 (IL8) and solute carrier family member 3 (SLC1A3) that were uniformly expressed in all canine OSA tumors, but not in all human pediatric OSA tumors. However, pediatric patients who did over-express IL8 and SLC1A3 had poorer outcomes then those who did not [50]. Yet another gene expression study of canine OSA tumors identified 10 significantly differentiated pathways between responders to treatment and non-responders [51]. These pathways [including cAMP signaling; chemokines and adhesion; Sonic Hedgehog and Parathyroid Hormone Signaling Pathways in Bone and Cartilage Development] are also disrupted in human cancers. These various findings suggest that alterations of similar pathways occur in human and canine OSA, but that species-specific genetic changes might account for overall disparity in incidence and aggressiveness. Related to that, Phillips et al. used a whole genome linkage approach to map OSA segregating in a four generation pedigree of Scottish Deerhounds [56]. They found evidence of linkage (Zmax=5.766) consistent with a dominant OSA mutation in a 4.5 Mb region of chromosome 34q16.2–q17.1 (syntenic to human 3q26). Because OSA is relatively rare and most cases are sporadic in humans, inherited forms and different risks across dog breeds offer a great opportunity to identify pathogenetic pathways.
OSA tumors in dogs and humans also share DNA structural changes. Analyzing 38 OSA tumors from 29 Rottweilers and 9 Golden Retrievers, a recent study demonstrated that, as with its human counterpart, dog OSA has a tendency toward highly complex and chaotic karyotypes [52]. These are comprised of structural and numerical aberrations, including gene dosage imbalances of known oncogenes and tumor suppressors. The most frequently observed genome alteration was an amplification affecting both the MYC and KIT (c-KIT) oncogenes. This is consistent with observations of genome alterations in human OSA that are predictive of clinical outcome. Notably, KIT was recently proposed as a novel therapeutic target for pediatric OSA [53]. This not only supports the genetic relevance of the canine model, but also the clinical utility of including dogs in OSA clinical trials. Thus, the canine OSA model recapitulates the human cancer and, because OSA occurs 20 times more often in dogs than humans [42], it provides an unparalleled opportunity for identifying key cellular pathways in this cancer [12].
Lymphomas
A group of cancers affecting the lymph tissue are collectively known as lymphomas. Lymphomas represent ~5% of all human cancers in the United States and account yearly for 4.6 Billion USD worth of treatment [http://www.cancer.gov/aboutnci/servingpeople/snapshots/lymphoma]. One specific class, non-Hodgkin’s lymphoma (NHL) occurs in B or T-cells, with >65,000 new cases reported in 2009 [for types of NHL, see http://www.cancer.gov/cancertopics/types/non-hodgkins-lymphoma]. Notably, the incidence of NHL is increasing but the etiology remains obscure [54]. Thus, an alternative model of lymphoma is needed to elucidate the causes and identify clinically meaningful cancer biology. Dogs and humans have similar tumor biology, tumor biological behavior, and genetic aberrations. The incidence of lymphoma in humans and dogs is similar [55]: 15.5-29.9 [56] and 15-30 [57] per 100,000, respectively. The most common type of NHL is the same in both humans and dogs – diffuse large B-cell – and the same chemotherapy agents are used to treat it [55]. An additional advantage of the dog model is the increased prevalence of lymphoma within specific dog breeds. Lymphoma is the most common life-threatening cancer in all dogs, accounting for 24% of all canine cancers [58]. Approximately, 1 in 4 Boxers and 1 in 8 Golden Retrievers develop lymphoma [32]. Additionally, there is a breed-specific distribution of B-cell and T-cell lymphomas [59; Fig. 3]: whereas excess incidence of T-cell lymphomas were noted in 10 breeds, the most striking occurred (in order of observed frequency) in Irish Wolfhounds, Siberian Huskies, and Shih Tzus. By contrast, the breeds with excessive occurrence of B-cell lymphomas were Cocker Spaniels and Basset Hounds. A second study conducted in Norway grouped together all types of lymphomas and also identified excessive occurrence of lymphomas in specific breeds, lending credence to a breed specific risk for lymphoma development [60]. They found the relative risk for lymphoma was highest in the Boxer and Flat-Coated Retriever. More recently, a study examined records from the Veterinary Medical Database and selected cases with a diagnosis of lymphoma type not specified, giant follicular lymphoma, and lymphosarcoma and used controls with any diagnosis other than lymphoma [61]. This study also identified a breed specific risk for lymphoma with the highest breeds including Bullmastiff [odds ratio (OR) 4.83 vs control], Boxer [OR 4.05 vs control] and Bernese Mountain dog [OR 3.64 vs control]. Notably, although the former and latter studies examined different subsets of lymphoma, they included many of the same breeds and had similar findings. For instance, the Irish Wolfhound had the highest rate of T-cell lymphoma in the Modiano et al. study [59], and also had an OR of 3.23 for lymphoma compared to other dogs in the Villamil et al. study [61]. The underlying cytogenetic basis of lymphoma appears to be shared in human and dog. The examination of three canine hematological cancers, including Burkitt lymphoma and small lymphocytic lymphoma [62], showed that these canine cancers shared cytogenetic abnormalities with those characteristic of their human counterparts. This suggests that humans and dogs share common pathways or an ancestrally retained pathogenetic basis for lymphoma [62]. Consequently, by using the dog genome in comparison with the human genome, relevant genetic aberrations can be identified.
Finally, the relevance of dogs as a lymphoma model is supported by use in clinical trials. Given that dogs develop spontaneous B-cell NHL and share many characteristics in common with human B-cell NHL [such as diagnostic criteria and response to a chemotherapy based regimen that includes cyclophosphamide, doxorubicin, vincristine, and prednisone (commonly referred to as the CHOP chemotherapy)], dogs were recently enrolled in a clinical trial of a selective and irreversible Bruton tyrosine kinase (Btk) inhibitor, PCI-32765, which blocks B-cell activation [63]. Activation of the B-cell antigen receptor signaling pathway contributes to the initiation and maintenance of B-cell [63]. This clinical trial research began when the same group described the synthesis of a series of Btk inhibitors that bind covalently to a cysteine residue leading to potent and irreversible inhibition of Btk enzymatic activity. In that study, after additional analysis of this agent in both cell lines and mouse models, they initiated a canine clinical trial. Although the clinical trial is ongoing to date, 8 dogs have been treated with 3 demonstrating stable disease and 3 with partial responses including one dog with a 77% decrease in tumor size [this drug is now undergoing human clinical development in patients with B-cell malignancies]. Finally, a recent pilot study used anti-human leukocyte antigen (HLA)-DR monoclonal antibody (mAb) as a treatment for dogs with lymphoma [64]. Preliminary results demonstrated that humanized IgG4 anti-HLA-DR, currently under evaluation pre-clinically for human trials, also bound malignant canine lymphocytes. These findings provide justification for the using dogs with lymphoma in safety and efficacy evaluations of therapy for both veterinary and human purposes [64, Fig. 4].
Potential utility of dogs in translational medicine
The naturally occurring relevance of the canine model to cancer in humans can be exploited to generate new treatments relatively quickly (Fig. 4). Whereas there are strict Food and Drug Administration (FDA) regulations concerning treatments to be used and commercialized, as well as for clinical trials in humans, there are fewer regulations for Phase I/II/III clinical trials before drugs use in pets [65; http://prsinfo.clinicaltrials.gov]. Rather, it is left to the discretion of the owner, who could approve the use of investigational therapeutics before conventional treatments. There are several trends in drug development that suggest increased use of dogs as translational models. Two of these are the rising proportion of biological vs. chemical compounds, and the growing focus on targeting genetic/biochemical pathways (or disease subtypes) vs. broad diseases or types of cancer. Here we propose that dogs are ideal patients in which to develop novel therapeutics. Several facts indicate using dogs in translational medicine can hugely accelerate drug development: reduced regulatory guidelines, vastly diminished and soon-to-be fully defined genetic variation within breeds (but similar levels of variation occur across all breeds as humans), reduced disease heterogeneity (i.e., breed-specific risks of diseases are often associated with a single founder mutation), and accelerated aging/disease progression compared to humans. These genetic benefits translate into faster progress at every stage – e.g., identifying disease mutations in discovery, identifying biomarkers and endpoints in clinical trials, and using pharmacogenetics from preclinical research to post-approval studies. Indeed, dogs have been instrumental in rapid development of biological and biological-like therapeutics, including gene therapies (e.g., for specific inherited forms of muscular and retinal dystrophies [66]) and antisense morpholino oligonucleotides (e.g., to alter mRNA splicing and avert nonsense-mediated decay of dystrophin [67]). However, we believe dog patients are greatly underutilized in development of therapeutic interventions. Drug development is difficult and risky, with the average drug costing ~800M USD to develop. One of the most challenging go/no go decision points is determination that a therapeutic agent is effective in humans. This is established by a small clinical study of select subjects that will likely respond to therapy. Dog breeds with known disease mutations are ideal lead-ins to such studies. Depending on the disease, such proof-of-concept studies could be done robustly in even fewer than 10 subjects, and at a pace proportional to the accelerated disease progression. Such studies would not only establish efficacy, pharmco-kinetics/dynamics, and toxicity, but also dosing, biomarkers/endpoints, and adverse effects. This could dramatically reduce the failure rate of human proof-of-concept studies, and thus time and costs.
Concluding remarks and future perspectives
Dogs are uniquely suited for use as an animal model of complex human disease due to their phenotypic diversity and naturally occurring disease similarity to human conditions. The evolutionary history of dogs, their position as a family member in many households, and the high level of health care they receive offer tremendous opportunities. That, combined with recently developed genetic resources, makes dogs outstanding models for the study of known genetic pathways, discovery of genetic and environmental contributions to disease, and translational studies in cancer risk, prevention, and treatments [6, 14]. The full utilization of canine models of cancer will require expertise in basic science, translation, and direct clinical relevance. This will necessitate large collaborations across almost all aspects of veterinary and human medicine: including molecular biology and genetics, epidemiology, pharmacology, bioinformatics, statistics, and engineering. Developing these pipelines now will speed potential therapeutic outcomes. Although this review focused on the relevance of the dog as a model for research in cancer genetics, biomedical research has long included canine models of numerous other diseases and their treatments [14]. For example, dogs are also increasingly used in behavioral research, including learning [68], social cognition [69], and the effects of diet and behavior enrichment on executive functioning [70]. Increased appreciation of the unique and comparative value of the dog as a model of diverse human diseases should accelerate research leading to new treatments, and improved health care for both we humans and for our best friend.
Acknowledgments
We thank C.A. London for critically reading the manuscript, and W.C. Kisseberth and C.G. Couto for providing their veterinary clinical expertise. CEA is supported by R210602710 from NIH/NIHGR, and funding from The Research Institute at Nationwide Children’s Hospital. JLR is supported by a fellowship award F31NR011559 from NIH/NINR.
Footnotes
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