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Cell Death and Differentiation logoLink to Cell Death and Differentiation
. 2010 Nov 5;18(4):656–665. doi: 10.1038/cdd.2010.138

cIAP1 and TAK1 protect cells from TNF-induced necrosis by preventing RIP1/RIP3-dependent reactive oxygen species production

N Vanlangenakker 1,2, T Vanden Berghe 1,2, P Bogaert 1,2, B Laukens 3, K Zobel 4, K Deshayes 4, D Vucic 4, S Fulda 3, P Vandenabeele 1,2,5,*, M J M Bertrand 1,2,5
PMCID: PMC3131911  PMID: 21052097

Abstract

Three members of the IAP family (X-linked inhibitor of apoptosis (XIAP), cellular inhibitor of apoptosis proteins-1/-2 (cIAP1 and cIAP2)) are potent suppressors of apoptosis. Recent studies have shown that cIAP1 and cIAP2, unlike XIAP, are not direct caspase inhibitors, but block apoptosis by functioning as E3 ligases for effector caspases and receptor-interacting protein 1 (RIP1). cIAP-mediated polyubiquitination of RIP1 allows it to bind to the pro-survival kinase transforming growth factor-β-activated kinase 1 (TAK1) which prevents it from activating caspase-8-dependent death, a process reverted by the de-ubiquitinase CYLD. RIP1 is also a regulator of necrosis, a caspase-independent type of cell death. Here, we show that cells depleted of the IAPs by treatment with the IAP antagonist BV6 are greatly sensitized to tumor necrosis factor (TNF)-induced necrosis, but not to necrotic death induced by anti-Fas, poly(I:C) oxidative stress. Specific targeting of the IAPs by RNAi revealed that repression of cIAP1 is responsible for the sensitization. Similarly, lowering TAK1 levels or inhibiting its kinase activity sensitized cells to TNF-induced necrosis, whereas repressing CYLD had the opposite effect. We show that this sensitization to death is accompanied by enhanced RIP1 kinase activity, increased recruitment of RIP1 to Fas-associated via death domain and RIP3 (which allows necrosome formation), and elevated RIP1 kinase-dependent accumulation of reactive oxygen species (ROS). In conclusion, our data indicate that cIAP1 and TAK1 protect cells from TNF-induced necrosis by preventing RIP1/RIP3-dependent ROS production.

Keywords: TNFR1, necrosis, smac mimetic, TAK1, cIAP1, necrosome

Until recently, necrosis was defined, in contrast to apoptosis, as an accidental and uncontrolled type of cell death. This definition is now obsolete, because accumulating experimental evidence has shown that necrosis is a well-regulated process activated by rather specific physiological and pathological stimuli.1 Necroptosis, or programmed necrosis, is a caspase-independent mode of cell death that prevails when caspases are either not activated or inhibited.2 The term ‘necroptosis' has been confined to regulated necrotic cell death mediated by receptor-interacting protein 1 (RIP1) kinase activity, and so by definition it is inhibited by necrostatin-1 (Nec-1).3, 4 It might be inappropriate, however, to restrict the definition of a cellular process to the activation of a particular initiator, as different pathways could initiate the process of necrosis.5 Necrosis occurs in medical conditions such as ischemia–reperfusion damage during organ transplantation, cardiac infarction, stroke, neurodegenerative diseases, and viral infection.6 Little is known about the proteins involved in and regulating signaling during programmed necrosis. Recent reports have identified two members of the serine–threonine RIP kinase family, RIP1 and RIP3, as crucial components of the tumor necrosis factor (TNF)-mediated necrotic process.7, 8, 9, 10 Interestingly, RIP1 has also been implicated in the apoptotic process triggered by several death receptors.11 This suggests that apoptosis and necrosis, initially defined as mutually exclusive cell death processes, might paradoxically share several regulatory components.

Among the arsenal of proteins that regulate the apoptotic process are the members of the inhibitor of apoptosis protein (IAP) family, which are potent suppressors of apoptotic cell death. It has long been assumed that their protective effect was exclusively due to their ability to bind and inhibit caspases, but recent findings have challenged this view. Structure–function studies have shown that, among the eight IAPs contained in the human genome, X-linked inhibitor of apoptosis (XIAP) is the only IAP that acts as a direct caspase inhibitor.12 In contrast, cellular inhibitor of apoptosis proteins-1 and -2 (cIAP1 and cIAP2) were shown to protect cells from apoptosis by acting as E3 ubiquitin ligases, an enzymatic activity conferred by their C-terminal RING finger domains. Protein ubiquitination is emerging as a key regulatory mechanism and its wide range of action depends on the ability of ubiquitin to form polymers: Lys48-linked ubiquitin chains typically target proteins for proteasomal degradation, while Lys63-linked chains serve as a docking site for signaling complexes. The role of cIAPs as E3 ligases in apoptosis regulation is complex and implicates both Lys48- and Lys63-polyubiquitination. On the one hand, cIAP1 mediates proteasomal degradation of caspase-3 and -713 and of NF-κB-inducing kinase.14, 15 On the other hand, cIAP-mediated Lys63-polyubiquitination of RIP1 allows it to bind to the pro-survival kinase transforming growth factor-β-activated kinase 1 (TAK1), which prevents it from activating a pro-apoptotic complex made of RIP1 and caspase-8.16 Accordingly, cylindromatosis (CYLD), a de-ubiquitinase that specifically hydrolyzes Lys63-linked polyubiquitin chains, counteracts the pro-survival effects of cIAPs on RIP1.17, 18

The observation that cIAPs are potent suppressors of cell death and that they mediate this function, at least in part, by a mechanism that does not involve direct caspase inhibition but entails modulation of RIP1 ubiquitination status, indicates that cIAPs and TAK1 could play a role in necrosis signaling. In this study, we tested this idea and identified cIAP1 and TAK1 as new regulators of TNF-induced programmed necrosis.

Results

BV6 treatment sensitizes cells to necrosis induced by TNF, but not to necrosis induced by anti-Fas, poly(I:C), or hydrogen peroxide

A widely used cellular system for studying necrotic cell death is the mouse fibrosarcoma L929 cell line. In these cells, necrosis can be elicited by stimulation with TNF alone,2 a combination of Fas receptor agonistic antibodies and the pan-caspase inhibitor benzyloxycarbonyl-Val-Ala-Asp(OMe)-fluoromethylketone (zVAD-fmk),19 double-stranded RNA (poly(I:C)) in the presence of interferon-β (IFNβ),20 or by treating the cells with hydrogen peroxide (H2O2).5 As a first approach to investigate the potential role of the cIAPs in necrotic cell death, we used BV6, an IAP antagonist that induces autoubiquitination and subsequent proteasomal degradation of cIAP1 and cIAP2 (Figure 1a).15 Surprisingly, we found that BV6 treatment had no effect on necrotic cell death induced by poly(I:C)+IFNβ, anti-Fas+zVAD-fmk, or H2O2, but greatly sensitized cells to TNF-induced necrosis (Figure 1b). Importantly, BV6 exposure alone did not lead to cell death (Figure 1b), and sensitization to TNF was observed even at very low doses of TNF (Figure 1c). Interestingly, although treatment with the RIP1 kinase inhibitor Nec-1 could block necrosis induced by TNF, poly(I:C)+IFNβ, and anti-Fas+zVAD-fmk (Supplementary Figure 1A), IAP depletion by BV6 could only sensitize cells to TNF-induced death. As reported previously, H2O2-induced necrosis could not be blocked by Nec-1.5 To test whether the enhanced cell death caused by TNF+BV6 was purely necrotic and not due to cumulative induction of apoptosis, we analyzed the processing of caspase-3, a clear marker of apoptosis. Caspase-3 cleavage was not detected, even in conditions in which up to 83% of the cells died. In contrast, caspase-3 processing was observed in the anti-Fas-treated controls (Figure 1d). To determine whether BV6 sensitization to TNF-induced necrosis is restricted to L929 cells or also applies to other necrotic model systems, we tested the effect of BV6 on Jurkat T cells deficient in Fas-associated via death domain (FADD). The absence of FADD in these cells renders them resistant to TNF-induced apoptosis and directs the system to necrosis. As observed in L929 cells, BV6 treatment of FADD-deficient Jurkat cells led to a rapid loss of cIAP1 and cIAP2 and greatly sensitized these cells to TNF-induced necrosis (Figure 1e). Taken together, these results show that BV6 specifically sensitizes cells to TNF-induced necrosis, and that this effect is not restricted to L929 cells.

Figure 1.

Figure 1

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BV6 treatment sensitizes cells to necrosis induced by TNF, but not to necrosis induced by anti-Fas, poly(I:C), or H2O2. (a) L929 cells were treated with 1 μM BV6 for the indicated durations. Cells were lysed and cIAP1/2 and XIAP were immunoblotted. (b) L929 cells were pre-treated with IFNβ, zVAD-fmk, or medium in the presence of BV6, and then stimulated with the mentioned triggers for the indicated times. Cell death (% Sytox positivity) was analyzed by flow cytometry. Data are representative of three independent experiments. Error bars represent standard deviation. (c) L929 cells were pre-treated with BV6 and stimulated with a serial dilution of TNF. After 20 h, cell viability was determined by an MTT assay. Error bars represent standard deviations of triplicates. (d) L929 cells were pre-treated with BV6 and stimulated with TNF. Cell lysates were made, and processed caspase-3 was checked by western blot. Stimulation with anti-Fas was included as a positive control for apoptosis. Cell death was determined by flow cytometry. (e) FADD−/− Jurkat cells were pre-treated with BV6 and stimulated with TNF for 24 h. Cell death (PI positivity) was analyzed by flow cytometry. Levels of cIAP1, cIAP2 and XIAP were checked on western blot. *P<0.05; **P<0.01 (Mann–Whitney U-test)

Loss of cIAP1 sensitizes L929 cells to TNF-induced necrosis

To exclude the possibility that BV6 enhances TNF-induced necrosis through an off-target effect, we next investigated the effect of specific repression of cIAP1, cIAP2, and XIAP in L929 cells by using an RNAi-based approach. Indeed, although BV6 treatment does not alter XIAP levels, recent studies have shown that the binding of BV6 to XIAP could abrogate its function.21 We tested the efficiency of cIAP1 and cIAP2 knockdowns by immunoblot using RIAP1, an antibody detecting both cIAP1 and cIAP2.22 cIAP1 RNAi completely repressed the signal detected by RIAP1, but cIAP2 RNAi did not alter it (Figure 2a), which shows that cIAP2 protein levels are below the immunoblot detection limit in L929 cells. We therefore confirmed cIAP2 repression by RT-PCR (Figure 2b). Remarkably, we found that repression of cIAP1 greatly increased TNF-induced necrotic cell death, whereas repression of cIAP2 or XIAP had no effect (Figure 2c). These data clearly illustrate that cIAP1 plays a protective role in TNF-induced necrosis in L929 cells and confirm that the BV6 effect is due to the loss of cIAP1 function.

Figure 2.

Figure 2

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Loss of cIAP1 sensitizes L929 cells to TNF-induced necrosis. (a) Protein levels of cIAP1, cIAP2, and XIAP were repressed by using RNAi. Knockdown efficiency was checked by western blot. Detection of cIAP2 is below detection limit. (b) mRNA levels of cIAP2 were tested using RT-PCR. cDNA from macrophages was included as a positive control. (c) L929 cells with repressed levels of cIAP1, cIAP2, or XIAP were stimulated with TNF (10 000 IU/ml) for 2, 4, or 6 h. Cell death (% Sytox positivity) was analyzed by flow cytometry. Results are representative of at least three independent experiments. Error bars indicate standard deviation. ***P<0.001 (Mann–Whitney U-test)

cIAP1 repression induces RIP1 kinase activity

Two members of the serine–threonine RIP kinase family, RIP1 and RIP3, are crucial components of the TNF-induced necrotic process, which according to recent studies requires active RIP1 kinase activity3, 9 to allow formation of a RIP1–RIP3–FADD necrosome complex.7, 8, 10 To position cIAP1 in the TNF necrotic pathway, we treated L929 cells with BV6 and Nec-1, alone or together, and then challenged them with a lethal dose of TNF for 4 h. Nec-1 completely protected cells from TNF-induced necrosis, both in the absence and presence of BV6 (Figure 3a). This inhibitory effect was observed even after 24 h of TNF stimulation (Supplementary Figure 1B). In parallel experiments, we found that depleting RIP3 by an RNAi-based approach also abrogated BV6 sensitization to TNF-induced death, which places cIAP1 upstream or at the level of RIP1 and RIP3 in the TNF necrotic pathway (Figure 3b). Next, by looking at extracellular signal-regulated kinase (ERK),23 we investigated whether cIAP1 could influence RIP1 kinase activity. We observed that BV6 treatment greatly enhanced TNF-induced ERK phosphorylation, and by using BV6 and Nec-1 together, we confirmed that this effect was RIP1 kinase dependent (Figure 3c). To rule out the possibility of off-target effects of these chemical agents, we confirmed the influence of cIAP1 on RIP1 kinase-mediated ERK phosphorylation by specifically repressing cIAP1 and RIP1 (Figure 3d). To test if RIP1-dependent ERK phosphorylation plays a direct role in BV6 sensitization to TNF-induced necrosis, we compared cell death in the absence or presence of U0126, a chemical inhibitor of the ERK-activating kinase (mitogen-activated protein kinase kinase 1/2), but we did not observe significant differences (Supplementary Figure 2). The effect of cIAP1 repression on RIP1 kinase activity was also observed by looking at RIP1 phosphorylation itself. Indeed, we found that BV6 pre-treatment led to RIP1 mobility shifts following TNF stimulation (Figure 3e). λ-Phosphatase treatment of immunoprecipitated RIP1 confirmed that these modifications were due to phosphorylation (Figure 3f), and combined treatment with BV6 and Nec-1 revealed that TNF-induced RIP1 phosphorylation in the presence of BV6 requires RIP1 kinase activity (Figure 3g). We conclude that cIAP1 depletion induces RIP1 kinase activity, which was shown to be required for TNF-induced necrosome formation.8, 10

Figure 3.

Figure 3

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cIAP1 repression induces RIP1 kinase activity. (a) L929 cells were pre-treated with 10 μM Nec-1 and 1 μM BV6 for 2 h and stimulated with TNF for 4 h. (b) RIP3 levels in L929 were reduced by using RNAi. After 72 h, cells were pre-treated with BV6 and stimulated with TNF for 6 h. Results are representative of at least three independent experiments. Error bars indicate standard deviations. *P<0.05; **P<0.01 (Mann–Whitney U-test). (c) L929 cells were pre-treated with BV6 in the presence or absence of Nec-1. Next, cells were stimulated with TNF and lysed. ERK activation (phosphorylated ERK) was checked by western blot. (d) cIAP1 and RIP1 levels were repressed using RNAi in L929 cells. Next, ERK phosphorylation was detected after TNF stimulation. Knockdown efficiency was checked by western blot. (e) L929 cells were pre-treated with BV6 and stimulated with TNF. (f) After TNF stimulation, RIP1 was immunoprecipitated and samples were treated with λ-phosphatase. (g) L929 cells were pre-treated with BV6 and Nec-1, followed by TNF stimulation. RIP1 protein levels were visualized using western blot

cIAP1 and TAK1 regulate the formation of the necrosome complex

Previous studies on tumor necrosis factor receptor 1 (TNFR1) signaling have shown that cIAP-mediated Lys63-ubiquitination of RIP1 protects cells from apoptosis by inducing formation of a TAK1-containing pro-survival complex that prevents RIP1 from activating a caspase-8 death complex.16 Accordingly, CYLD, a Lys63-specific de-ubiquitinase, was shown to enhance TNF-induced apoptosis by stimulating formation of the RIP1–caspase-8 death complex.18 Recent studies have also shown that TNFR1-mediated necrosis requires the formation of a cytosolic necrosome complex containing RIP1, RIP3, and FADD.7, 8, 10 To investigate whether cIAP1 and TAK1 protect cells from TNFR1-induced necrotic death by preventing formation of this death complex, we first tested the effect of TAK1 repression in L929 cells. As shown in Figure 4a, TAK1 RNAi strongly sensitized cells to TNF-induced necrosis, and, importantly, this effect was abolished when RIP1 kinase activity was blocked by Nec-1. To test whether the protective effect of TAK1 requires its kinase activity, we pre-treated L929 cells with a derivative of the TAK1 kinase inhibitor 5Z-7-oxozeaenol (5Z-7). Like TAK1 depletion, use of 5Z-7 strongly sensitized L929 cells to TNF-induced necrosis, and this effect was also prevented by Nec-1 (Figure 4b). In parallel experiments, we found that lowering CYLD levels protected L929 cells against TNF-induced necrosis (Figure 4c). Next, we analyzed how depletion of cIAP1 with BV6 and inhibition of TAK1 kinase activity with 5Z-7 affect formation of the necrosome complex. As shown in Figure 4d and e, both treatments led to increased recruitment of RIP1 to RIP3 and FADD following TNF stimulation. As previously reported by Cho et al.,10 we found constitutive binding of RIP3 to FADD. Taken together, our data indicate that cIAP1 and TAK1 protect cells from TNF-induced necrosis by preventing formation of the RIP1–RIP3–FADD necrosome.

Figure 4.

Figure 4

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cIAP1 and TAK1 regulate the formation of the necrosome complex. (a) TAK1 levels in L929 were repressed by using RNAi. After 72 h, cells were pre-treated with Nec-1 and triggered with TNF. (b) L929 cells were pre-treated with Nec-1 (10 μM) and TAK1 kinase inhibitor 5Z-7 (1 μM) for 1 h, and then stimulated with TNF (10 000 IU/ml) for 2 h. (c) CYLD levels were reduced in L929 cells as described above, and then stimulated with TNF for 4 or 6 h. Cell death (% Sytox positivity) was analyzed by flow cytometry. Knockdown efficiency was checked by western blot. Results are representative of at least three independent experiments. Error bars indicate standard deviations. *P<0.05; ***P<0.001 (Mann–Whitney U-test). (d and e) L929 cells were pre-treated with BV6 or 5Z-7, followed by TNF stimulation. FADD was immunoprecipitated and immunoblotted

cIAP1 or TAK1 depletion augments RIP1/RIP3-dependent ROS generation induced by TNF

RIP1/RIP3-mediated cell death is thought to depend on the production of reactive oxygen species (ROS).7, 24, 25 To determine whether sensitization of cIAP1-depleted L929 cells to TNF-induced necrotic cell death involves generation of ROS or activation of an alternative death mechanism, we monitored ROS generation. As shown in Figure 5a and b, TNF-induced RIP1/RIP3-dependent death was accompanied by modest intracellular ROS production, which was measured by incubating the cells with dihydrorhodamine 123 (DHR123). Interestingly, we found that BV6 treatment induced a rapid and massive production of ROS upon TNF stimulation; this ROS production was greatly repressed when cell death was inhibited by Nec-1 or by repressing RIP3 levels (Figure 5a and b). Like BV6 treatment, lowering cIAP1 or TAK1 levels by RNAi also considerably augmented ROS production in response to TNF, whereas repressing CYLD levels prevented ROS generation (Figure 5c and d). As expected, XIAP knockdown had no effect on TNF-dependent ROS induction. To test whether the increased ROS generation observed in cIAP1-depleted L929 cells was responsible for the sensitization to TNF-induced necrosis, we compared cell death in L929 cells treated with BV6 alone or in combination with the anti-oxidant butylated hydroxyanisole (BHA). BHA treatment greatly reduced BV6 sensitization to TNF-induced necrosis, which indicates that the peak of ROS production monitored in cIAP1-depleted L929 cells was responsible for the increase in cell death (Figure 5e).

Figure 5.

Figure 5

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cIAP1 and TAK1 depletion augments RIP1/RIP3-dependent ROS generation induced by TNF. (a) L929 cells were pre-treated with BV6 and Nec-1, and then stimulated with TNF (10 000 IU/ml). (b) RIP3 levels in L929 cells were reduced for 72 h using RNAi, and then treated with BV6 and TNF. Protein levels of (c) cIAP1 or XIAP and (d) TAK1 or CYLD were reduced by using RNAi, followed by TNF stimulation. (e) L929 cells were pre-treated with BV6 and 100 μM BHA. (f) p22phox (encoded by the Cyba gene) and Ndufb8 levels were repressed using RNAi, followed by BV6 treatment and TNF stimulation. Knockdown efficiency was checked by western blot or RT-PCR. Cell death (% Sytox positivity) and ROS generation (ΔMFI (DHR123)) were analyzed simultaneously by flow cytometry. Results are representative of at least two independent experiments. Error bars indicate standard deviations

TNF-mediated ROS production can originate from the NADPH oxidase complex26 or at the mitochondria.5, 25 As BHA is not only a broad ROS scavenger, but also a cytosolic phospholipase A2 inhibitor,27 we investigated the lethal contribution of each source by comparing the effects of their specific inhibition. A recent study reported that ROS generation requires recruitment of riboflavin kinase (RFK) and the NADPH oxidases Nox1 and Nox2 to TNFR1.26, 28 We found that specific repression of components of the NADPH oxidase complex (RFK, Nox1, and p22phox) by RNAi did not affect death induced by TNF or TNF+BV6, but repression of NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (NDUFB8) (subunit of mitochondrial complex I) strongly attenuated it (Figure 5f and data not shown). Our results therefore indicate that, in the absence of cIAP1, TNF-induced necrosis in L929 cells requires RIP1/3-mediated mitochondrial ROS production. We also found that absence of cIAP1 greatly enhanced TNF-induced ROS production without inducing translocation of RIP1 or RIP3 to the mitochondria; this points to the involvement of other cytoplasmic intermediates (Supplementary Figure 3). Taken together, our results show that cIAP1 and TAK1 protect L929 cells from TNF-induced necrosis by repressing RIP1-kinase-dependent induction of ROS generation and cell death.

Discussion

The identification of the RIP1 kinase inhibitor Nec-1 has enabled researchers to reveal the involvement of necrotic cell death in an increasing number of pathological conditions.3, 4 Indeed, RIP1 kinase activity is dispensable in most apoptotic conditions, but is crucial for the activation of a regulated form of necrosis recently named necroptosis.4, 29 In the absence of an in vivo genetic model of kinase-inactive RIP1, the use of Nec-1 has emerged as the best tool for studying the function of RIP1 kinase. So far, necrotic cell death has been implicated in neuronal toxicity, ischemic brain injury, myocardial infarction, chemotherapy-induced cell death, and during viral infection.1, 10 The finding that RIP1 is implicated in both apoptotic and necrotic pathways suggests that these cell death processes, which were initially defined as being mutually exclusive, might share similar regulatory mechanisms.18 IAP family members protect cells from apoptosis by inhibiting caspases and by regulating RIP1 ubiquitination status.12, 13, 16, 30, 31 In addition, IAPs have been implicated in several RIP1-dependent apoptotic triggers (such as stimulation of TNFR1, Fas, or toll-like receptor 3 (TLR3))14, 15, 16, 18, 32, 33, 34 that can also induce necrotic cell death under certain conditions. We found that the IAP antagonist BV6 greatly sensitized L929 cells to TNF-induced necrotic cell death, but not to necrosis induced by poly(I:C)+IFNβ, anti-Fas+zVAD-fmk, or H2O2. We confirmed those results using an RNAi approach and identified cIAP1 as a major regulator of TNF-induced necrosis. With the exception of H2O2, all the above-mentioned necrotic triggers require intact RIP1 kinase activity (repressed by Nec-1).5, 9, 20 Therefore, our results show the involvement of cIAP1 only in a subset of RIP1-dependent necrotic pathways in L929 cells.

Geserick et al.32 recently reported that loss of cIAPs sensitizes a keratinocyte cell line to FasL-induced apoptosis. Intriguingly, in these cells, the presence of IAP antagonist allows moderate induction of necrosis in conditions where caspases are inhibited, which apparently does not occur in the absence of IAP antagonist. This observation indicates that the presence of cIAPs negatively regulates FasL-induced necrosis. Similarly, the authors showed that mouse embryonic fibroblasts depleted of IAPs are sensitized to a type of FasL-induced cell death that can only be blocked by combining Nec-1 with caspase inhibition, suggesting necrotic cell death. In our L929 cell system, triggering Fas induces apoptosis that is not sensitized by BV6 treatment (data not shown). Pure necrotic cell death is observed in L929 cells when Fas is triggered in the presence of zVAD-fmk, and again BV6 treatment had no impact on cell viability (Figure 1). This indicates no protective role of the cIAPs in either Fas-mediated apoptotic or necrotic cell death. The observed difference between our results and those of Geserick et al. might be explained by differential time kinetics of cell death induction (2–3 h versus 24–48 h, which leaves no room for sensitization in the case of L929 cells) or by the use of different triggers (FasL versus agonistic Fas receptor antibodies), different IAP antagonists (Compound A versus BV6), and different cell types. Moreover, MEFs are poorly sensitive to Fas-induced death; this is only revealed in sensitizing conditions, such as the addition of cycloheximide or IAP inhibitors, showing again a major difference from the L929 model system. Nevertheless, together with previous studies, our results suggest that ubiquitination of RIP1 prevents it from activating death pathways. The finding that cIAPs act as E3 ubiquitin ligases for RIP1 downstream of TNFR1 explains why cIAPs-depleted cells are greatly sensitized to TNF-induced death. The absence of BV6-induced sensitization when stimulating L929 cells with TLR3 or Fas agonists could indicate that other E3 ubiquitin ligases confer the ubiquitin-dependent protective effect on RIP1, potentially in a cell-type-specific manner. This hypothesis is consistent with the recent findings of Chang et al.,35 who reported that pellino 1 acts as an E3 ubiquitin ligase for RIP1 in TLR3 signaling.

The fate of polyubiquitinated proteins is determined largely by the nature of the ubiquitin linkages. Generally, addition of Lys48-polyubiquitin chains allows recognition and degradation by the proteasome, whereas Lys63-ubiquitination has emerged as a key regulatory event that conveys signals from receptors to intracellular kinase cascades. cIAP-mediated Lys63-ubiquitination of RIP1 has been shown to protect cells from TNF-induced apoptosis by allowing the formation of a TAK1-containing pro-survival complex that prevents RIP1 from activating caspase-8-dependent death.16 Accordingly, the Lys63-specific de-ubiquitinase activity of CYLD was proposed to enhance TNF-induced apoptosis by reverting the effects of cIAPs.18 Here, using Nec-1- and RIP3-specific RNAi, we positioned cIAP1 and TAK1 upstream or at the level of RIP1/3, and found that repressing either protein greatly sensitized L929 cells to TNF-induced necrosis, whereas lowering CYLD levels had the opposite effect. Our attempts to detect TNF-induced RIP1 ubiquitination failed, most probably due to the low levels of ubiquitinated RIP1 in L929 cells. However, our results suggest that cIAP1 protects L929 cells from TNF-induced necrosis through Lys63-ubiquitination of RIP1. It is tempting to speculate that Lys63-ubiquitinated RIP1 allows the formation of a TAK1-containing pro-survival complex that represses RIP1 kinase activity. Consistent with this hypothesis, we found that RIP1 kinase-dependent ERK phosphorylation induced by TNF is greatly increased when cIAP1 expression is repressed. In accordance with previous results, we also found that blocking ERK phosphorylation had no significant inhibitory effect on BV6-induced sensitization of TNF-induced necrosis.24 Interestingly, we found that pre-treating L929 cells with BV6 led to TNF-induced RIP1 kinase-dependent phosphorylation of RIP1 at a time that coincided with the recruitment of RIP1 to RIP3 and FADD. Further research is required to identify the BV6-induced phosphorylation sites on RIP1, which might be implicated in the formation of the RIP1 and RIP3 complex and induction of necrotic cell death.

Several studies report that RIP1/RIP3-regulated necrosis is ROS mediated, and we confirmed strong correlations between cell death and RIP3- or RIP1-kinase-dependent ROS induction. For this reason, we investigated whether loss of cIAP1 influences ROS production. Reducing cIAP1 concentration did not affect basal levels of ROS. However, upon TNF stimulation, ROS generation increased considerably, and this effect was repressed by Nec-1 and by knocking down RIP3. Interestingly, lowering CYLD levels also inhibited ROS induction, suggesting that the RIP1 ubiquitination status determines its kinase-dependent capacity to induce ROS. Although controversial, the ability of RIP1 to induce NF-κB activation was shown to rely on its ubiquitination status, with Lys63-ubiquitin chains serving as a scaffold for the recruitment of TAK1 and for the activation of the IKK complex.36, 37, 38 We found that repressing TAK1 levels or inhibiting its kinase activity sensitized cells to TNF-induced necrosis and led to increased ROS generation. Therefore, cIAP1 deficiency might increase TNF-induced ROS generation owing to the absence of NF-κB activation. Indeed, cIAPs are E3's for RIP116, 39 and play a crucial role in TNF-induced NF-κB activation, which is known to upregulate the antioxidative capacity of the cell.40 However, our results negate this possibility. Indeed, we found that Nec-1 prevents BV6-induced TNF-dependent sensitization to death and reduces ROS generation without restoring NF-κB capacities (data not shown). These data are consistent with previous studies reporting that NF-κB does not protect against TNF-induced necrosis.41 Taken together, our results show that NF-κB inhibition is not sufficient to explain the massive TNF-dependent ROS production and suggest that cIAP1, TAK1 and CYLD play a direct role in regulating ROS production by modulating RIP1 kinase activity through ubiquitination.

In conclusion, this work complements and extends data from a recent publication by He et al., who found increased TNF-dependent necrotic cell death in cells treated with a combination of IAP antagonist (smac mimetic) and zVAD-fmk. We show that necrotic and apoptotic cell death share some regulatory components and mechanisms. We also describe a new function for cIAP1 and TAK1 in protecting cells from TNF-induced necrosis by regulating RIP1 kinase-dependent generation of ROS.

Materials and Methods

Cell lines

L929sAhFas cells had been generated by expressing the human Fas gene in L929sA cells, a TNF-sensitive derivative of the murine fibrosarcoma cell line L929.2 These cells are referred to as L929 cells and were cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal calf serum, penicillin (100 IU/ml), streptomycin (0.1 mg/ml), and -glutamine (0.03%). Human Jurkat clones deficient in FADD were a gift from Dr. J Blenis and were cultured in RPMI 1640 medium supplemented with 10% fetal calf serum, 1 mM -glutamine, 25 mM HEPES buffer, 50 U/ml penicillin, and 50 μg/ml streptomycin.

Antibodies, cytokines, and reagents

Recombinant human TNF, produced and purified to at least 99% homogeneity in our laboratory, has a specific biological activity of 3 × 107 IU/mg and is used for stimulation of L929 cells. FADD−/− Jurkat cells were stimulated with human TNF (Biochrom AG, Berlin, Germany). Anti-human Fas antibodies (clone 2R2; Cell Diagnostica, Munster, Germany) and poly(I:C) (synthetic dsRNA) (Amersham Pharmacia Biotech, Rainham, UK) were used at 125 ng/ml and 3.5 μg/ml, respectively. Recombinant murine IFNβ, produced in Escherichia coli and purified in our laboratory, was used at 1000 IU/ml. The caspase peptide inhibitor, zVAD-fmk (Bachem, Bubendorf, Switzerland), was used at 10 μM. BHA, U0126, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and H2O2 30% (all from Sigma Aldrich, St. Louis, MO, USA) were used at, respectively, 100 μM, 20 μM, 500 μg/ml, and 2 mM. Nec-1 (Calbiochem, San Diego, CA, USA) was used at 10 μM. IAP antagonist BV6 was used at 1 μM (Genentech Inc., South San Francisco, CA, USA). A derivative of 5Z-7, NP-009245, was used at 1 μM (AnalytiCon Discovery GmbH, Potsdam, Germany). Sytox Red Dead Cell Stain, DHR123 (Molecular Probes–Invitrogen, Eugene, OR, USA), and propidium iodide (Sigma Aldrich, Steinheim, Germany) were used at, respectively, 5 nM, 1 μM, and 3 μM. The following antibodies were used for L929 cells: antibody against cIAP1 and cIAP2 (RIAP1 antibody,22 a kind gift from Dr. RG Korneluk, University of Ottawa, Canada), anti-XIAP monoclonal antibody (MBL International, Woburn, MA, USA), anti-β-tubulin (HRP) (Abcam, Cambridge, UK), anti-β-actin (clone C4; MP Biomedicals Europe N.V., Illkirch, France), antibody against full-length and processed murine caspase-3 (rabbit polyclonal antibody made in-house), anti-NDUFB8 (MS105) (Bio-Connect B.V., TE Huissen, The Netherlands), anti-p44/42 MAPK (ERK1/2), anti-phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (both Cell Signaling Technology, Beverly, MA, USA), anti-TAK1 (M-579), anti-CYLD (CYLD 1 (E-10)) (both from Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-RIP1 (610459; BD Biosciences, Franklin Lakes, NJ, USA), anti-RIP3 (Sigma Aldrich), and purified mouse anti-cytochrome c (BD Pharmingen, San Diego, CA, USA). In FADD−/− Jurkat cells, we used anti-cIAP1 and anti-cIAP2 (both Santa Cruz Biotechnology, anti-XIAP monoclonal antibody (BD Pharmingen), and anti-β-actin antibody (BD Biosciences).

Immunoprecipitation

L929 cells were lysed in NP-40 buffer (150 mM NaCl, 1% NP-40, 10% glycerol, 10 mM Tris (pH 8)) containing complete, EDTA-free protease inhibitor cocktail tablets (no. 11873580001) and phosphatase inhibitor cocktail tablets (PhosSTOP, no. 04906837001) (both from Roche Diagnostics Belgium N.V., Vilvoorde, Belgium). FADD was immunoprecipitated using the anti-FADD (M-19, sc-6036) (Santa Cruz Biotechnology) and revealed using anti-FADD 12E7 (obtained from Dr. Strasser, WEHI, Melbourne, Australia).

Analysis of cell survival, cell death, and ROS production

Cell death and ROS production were analyzed by flow cytometry on a dual-laser (488 and 635 nm) FACSCalibur with Cellquest software or a triple-laser (405, 488, and 635 nm) LSR-II with FACSDiva software (both from BD Biosciences). L929 cells were pretreated with IFNβ for 18 h, BV6 for 2 h, and zVAD-fmk, Nec-1, 5Z-7, BHA, or U0126 for 1 h. TNF (10 000 IU/ml), H2O2 (2 mM), poly(I:C) (3.5 μg/ml), or anti-Fas (125 ng/ml) was added for the indicated periods. Cell death or loss of plasma membrane integrity was determined by measuring Sytox Red or PI-emitted fluorescence. Cellular ROS production was determined by measuring the conversion of DHR123 to R123. Only viable cells (Sytox negative) were gated for the analysis of ROS production. Values for ROS generation are expressed as ΔMFI (DHR123) (median DHR123 fluorescence intensity value minus background value). All experiments were performed at least twice in triplicate. Cell survival was determined by MTT assays following standard protocol.

RNAi-mediated knockdown

L929 cells were transfected in six-well plates according to the manufacturer's protocol using 20 nM siRNA targeting cIAP1, cIAP2, XIAP, RIP3, TAK1, CYLD, Cyba, or NDUFB8. As a negative control, we used siCONTROL non-targeting siRNA (ON-TARGETplus SMART pool siRNA; Dharmacon, Thermo Fisher Scientific, Waltham, MA, USA). INTERFERin (Polyplus-transfection SA, Illkirch, France) was used as a transfection reagent. After 72 h, L929 cells were stimulated with TNF and cell death was determined as described above. Knockdown efficiency was tested by western blot or RT-PCR.

RT-PCR

RNA was prepared from L929 cells using RNeasy Plus Mini Kit (Qiagen, Venlo, The Netherlands). Starting with 2 μg RNA, cDNA was synthesized using SuperScript Reverse Transcriptase III kit (Invitrogen, Eugene, OR, USA). PCR was performed using GoTaq Green Mastermix (Promega, Fitchburg, WI, USA). PCR products were separated on 2% agarose gel and visualized by SYBR Safe DNA gel stain (Molecular Probes–Invitrogen).

Mitochondrial fractionation assay

Enrichment of cytosolic and mitochondrial fractions of L929 cells was performed according to the manufacturer's protocol (Mitochondrial/Cytosol Fractionation kit; BioVision, Mountain View, CA, USA). For each condition, 5 × 107 L929 cells were used.

Acknowledgments

We thank Professor Wim Declercq and Dr. Saskia Lippens for critical feedback and discussion and Dr. A Bredan for editing. We are grateful to Dr. RG Korneluk for sending the RIAP1 antibody. TV and MB received a postdoctoral fellowship from the FWO, PB is paid by VIB, and NV obtained a predoctoral fellowship from the BOF, Ghent University. BL was a master student working in the labs of both Professor Simone Fulda and Professor Peter Vandenabeele. Research in the Vandenabeele group is supported by VIB, Ghent University, Research Foundation Flanders (FWO-Vlaanderen) (3G.0218.06 and G.0226.09), Federal Research Program IAP 6/18, European Research Program FP6 ApopTrain (MRTN-CT-035624) and FP7 Apo-Sys 200767, and the GROUP-ID consortium of the UGent MRP initiative. PV holds a Methusalem Grant (BOF09/01M00709) from the Flemish Government. Research in the Fulda group is supported by the Deutsche Forschungsgemeinschaft, Federal Research Program IAP 6/18, European Research Program FP6 ApopTrain (MRTN-CT-035624) and FP7 Apo-Sys 200767.

Glossary

5Z-7

5Z-7-oxozeaenol

BHA

butylated hydroxyanisole

cIAP1/2

cellular inhibitor of apoptosis proteins-1/-2

CYLD

cylindromatosis

DHR123

dihydrorhodamine 123

ERK

extracellular signal-regulated kinase

FADD

Fas-associated via death domain

H2O2

hydrogen peroxide

IFNβ

interferon-β

MEK1/2

mitogen-activated protein kinase kinase 1/-2

NDUFB8

NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8

Nec-1

necrostatin-1

Nox1

NADPH oxidase 1

RFK

riboflavin kinase

RIP

receptor-interacting protein

ROS

reactive oxygen species

TAK1

transforming growth factor-β-activated kinase 1

TLR3

toll-like receptor 3

TNF

tumor necrosis factor

TNFR1

tumor necrosis factor receptor 1

XIAP

X-linked inhibitor of apoptosis

zVAD-fmk

benzyloxycarbonyl-Val-Ala-Asp(OMe)-fluoromethylketone

The authors declare no conflict of interest.

Footnotes

Supplementary Information accompanies the paper on Cell Death and Differentiation website (http://www.nature.com/cdd)

Edited by M Deshmukh

Supplementary Material

Supplementary Figures 1–3
Click here for additional data file. (2MB, pdf)
Supplementary Figure Legends
Click here for additional data file. (26KB, doc)

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Associated Data

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Supplementary Materials

Supplementary Figures 1–3
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Supplementary Figure Legends
Click here for additional data file. (26KB, doc)

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