Phosphorus (P) is one of 17 essential elements (nutrients) required for plant growth (Tiessen, 2008; Cordell et al., 2009). Although bound P is quite abundant in many soils, it is largely unavailable for uptake. As such, P is frequently the most limiting element for plant growth and development. Crop yield on 40% to 60% of the world’s arable land is limited by P availability. Mined rock phosphate is the primary source of P fertilizer. Approximately 90% of all mined rock phosphate is used for agriculture (Tiessen, 2008; Cordell et al., 2009). However, rock phosphate is a nonrenewable resource (Steen, 1998; Cordell et al., 2009), and easily mined, high-quality rock phosphate sources are projected to be depleted within 30 to 50 years (Steen, 1998; Tiessen, 2008; Cordell et al., 2009). Peak P production is projected to occur in 2035 to 2040 (Cordell et al., 2009). In addition, the world’s major reserves of rock phosphate are located in geographical areas where uncertain political issues could limit access to the world’s P resources. Sustainable management of P in agriculture requires that plant biologists discover mechanisms that enhance P acquisition and exploit these adaptations to make plants more efficient at acquiring P, develop P-efficient germplasm, and advance crop management schemes that increase soil P availability.
Cluster roots (Fig. 1), extremely specialized tertiary lateral root structures, are an important adaptive strategy of plants to cope with nutrient-poor, P-depleted soils (Dinkelaker et al., 1995; Neumann and Martinoia, 2002; Vance et al., 2003; Lambers et al., 2006). They are produced on plants from a diverse range of families (Dinkelaker et al., 1995; Watt and Evans, 1999; Shane and Lambers, 2005). White lupin (Lupinus albus) forms cluster roots in response to P starvation. Cluster roots are characterized as concentrated zones of tertiary lateral roots emerging in waves from secondary roots. Root hair density appears to be greater in mature cluster root zones than typical lateral roots. Such an adaptation leads to a striking increase in root surface area available for P uptake from the rhizosphere (Keerthisinghe et al., 1998; Neumann et al., 1999). Cluster root development and function involve a highly synchronous series of molecular and biochemical processes, including highly enhanced lateral root initiation, increased root hair formation, root exudation of organic acid chelators (citrate and malate), modified carbon assimilation, release of enzymes (acid phosphatase, ferric chelate reductases) into the rhizosphere, and more efficient uptake of P from the rhizosphere (Dinkelaker et al., 1989; Neumann et al., 1999; Watt and Evans, 1999; Liu et al., 2001, 2005; Miller et al., 2001; Uhde-Stone et al., 2003a, 2005; Wasaki et al., 2003). Advances have recently been made in understanding the molecular and biochemical events surrounding cluster root formation and function. As a crop, white lupin is a practical alternative to evaluate acclimation to P deficiency, particularly as related to cluster-rooted species (Johnson et al., 1996; Keerthisinghe et al., 1998; Watt and Evans, 1999; Neumann and Martinoia, 2002).
Figure 1.

White lupin P deficiency cluster roots emerge as waves of tertiary lateral roots along the axis of secondary roots.
P SIGNALING: SYSTEMIC VERSUS LOCAL
Cluster root system development is highly plastic and affected by the deficiency of several nutrients. Among these factors, P deficiency appears to be the most important element determining cluster root formation in white lupin (Gardner et al., 1983; Dinkelaker et al., 1995; Johnson et al., 1996). Both local (external P) and systemic (internal P) signaling have been implicated as factors influencing cluster root formation. Reciprocal grafting studies between white lupin and narrow leaf lupin (Lupinus angustifolius), which does not form cluster roots, have shown that the root genotype dictates cluster root development when P is limiting. These results support the hypothesis that both local and systemic signaling regulates cluster root formation. Application of P through foliar feeding of white lupin and split-root systems (Marschner et al., 1987; Gilbert et al., 1997; Shane et al., 2003; Li et al., 2008) has conclusively shown that increasing internal P concentration results in reduced cluster root formation and exudation of organic acids and protons. They further confirmed that the critical internal P concentration for cluster root development was 2 to 3 mg P g−1 dry weight.
Similar to the classic studies of Drew (1975), Shu et al. (2007) demonstrated that availability of local root P (external) in soil patches can induce cluster root formation and proton extrusion. Local P sensing by the root is well known in Arabidopsis (Arabidopsis thaliana). Root contact with low P blocks growth of the primary root and stimulates lateral root formation (López-Bucio et al., 2003; Ticconi et al., 2004; Reymond et al., 2006). Liu et al. (2005) and Tesfaye et al. (2007) have shown that localized root contact with high P quickly reduces P deficiency-induced gene expression in white lupin cluster roots. An Arabidopsis mutant, P deficiency response2 (pdr2), which encodes a P5-type ATPase, displays altered root architecture and hypersensitivity to low P due to the disruption of local P sensing (Ticconi et al., 2004, 2009). PDR2 was further found to function in the endoplasmic reticulum and to be required for proper expression of SCARECROW (SCR). SCR belongs to the GRAS family of transcription factors and key regulators of root patterning (Petricka and Benfey, 2008). SCR protein was markedly reduced in the pdr2 mutant within 1 d after transferring to P-free medium; however, this reduction can be rescued by increasing SCR gene dosage (Ticconi et al., 2009). Evidence suggested that PDR2 is imperative for maintaining SCR protein during P starvation. White lupin SCRs (LaSCR1 and LaSCR2) have been isolated and recently characterized (Sbabou et al., 2010). Consistent with the localization of SCR genes in all the species examined to date (Pysh et al., 1999; Sassa et al., 2001; Kamiya et al., 2003; Laajanen et al., 2007), the expression of LaSCR genes has been localized to the root endodermis and quiescent center and seems to be closely related to cluster root development rather than to the P status of the plant. Suppression of LaSCR1 transcripts in transgenic lupin roots resulted in reduced cluster root numbers, implying a role for LaSCR1 in maintaining root growth in white lupin (Sbabou et al., 2010).
Also in Arabidopsis, three low-phosphate root quantitative trait loci (LPR1–LPR3) involved in root growth response to low P have been mapped in recombinant inbred lines derived from the Bayreuth and Shahdara wild accessions (Reymond et al., 2006). Map-based cloning showed that LPR1 encodes a multicopper oxidase. The quantitative trait locus trait was explained by the different patterns of LPR1 expression in the root tip, specifically in the root cap (Svistoonoff et al., 2007). Through an agar plate compartmented root-growth experiment, the authors further showed that physical contact of the primary root tip with low-P medium is necessary and sufficient to arrest root growth. We have found an EST having high similarity to the Arabidopsis LPR1 in a white lupin P deficiency-induced cluster root cDNA library. It appears to be highly up-regulated in root tips of P-starved plants when compared with other cluster root developmental stages (L. Cheng and C. Vance, unpublished data). It will be informative to determine whether lupin LPR1 shows the same conserved function as Arabidopsis LPR1 in sensing external P.
It is noteworthy that white lupin is an excellent system in which to evaluate signal transduction compounds transported in phloem and xylem sap (Atkins and Smith, 2007). Recent analysis of white lupin phloem has identified 86 proteins and 609 unique transcripts transported in sap (Rodriguez-Medina et al., 2011). Signal transduction proteins and mRNAs constituted 2% and 5%, respectively, of the compounds found in phloem sap. In addition, 330 small RNAs, several of which are implicated in signal transduction, were detected in phloem sap. The ease with which white lupin xylem and phloem sap can be collected provides a unique tool to use in evaluating the transport of signal transduction components in plants grown under abiotic and/or biotic stress.
HORMONES ARE INVOLVED IN LUPIN CLUSTER ROOT DEVELOPMENT
Because white lupin cluster root development involves the synchronized initiation and growth of a large number of tertiary lateral roots in distinct wave-like patterns originating lateral roots, it would not be surprising that hormone balance plays a role in this P-adaptive process (Gilbert et al., 2000; Neumann et al., 2000; Skene and James, 2000). Many of the hormonally controlled developmental responses occurring in P-stressed Arabidopsis that give rise to modified root architecture appear also to be involved in cluster root formation. Substantial support for the role of auxin in cluster root formation comes from observations showing that exogenous application of auxin to P-sufficient white lupin stimulates cluster roots, thereby mimicking P deficiency-induced cluster root induction (Gilbert et al., 2000; Skene and James, 2000). Moreover, white lupin roots impaired for endogenous auxin transport by being grown in the presence of the auxin transport inhibitor N-1-naphthylphthalamic acid failed to form induced cluster roots under P deficiency (Gilbert et al., 2000). Many genes involved in auxin synthesis and signaling are abundantly expressed in developing cluster roots of white lupin (Uhde-Stone et al., 2003b; Vance et al., 2003; Yamagishi et al., 2011). These data clearly show that a significant component of P-induced cluster root formation is due to auxin synthesis and transport. We have initiated studies to evaluate auxin signaling in cluster root development by transforming them with the auxin reporter construct DR5-GUS (Ulmasov et al., 1997). In addition, we have isolated an IAA7/axr2 gene and transformed white lupin roots with an IAA7/axr2:GUS reporter (Fig. 2). The IAA7/axr2 reporter was highly active in P-stressed cluster roots relative to P-sufficient roots. In comparison, the DR5 reporter was active over a greater range of cluster root development in P-stressed plants as compared with P-sufficient ones (data not shown). These studies, similar to those in Arabidopsis, suggest that P-deficient cluster roots have increased sensitivity to auxin.
Figure 2.
GUS reporter gene activity in P-deficient (−P) and P-sufficient (+P) white lupin cluster roots transformed with Agrobacterium rhizogenes containing promoter:GUS reporter constructs for genes involved in hormone signaling. Note the effect of –P and +P on reporter gene activity. CRE, The alfalfa cytokinin receptor gene promoter:GUS construct transformed into white lupin cluster roots; CKX, the white lupin cytokinin oxidase gene promoter:GUS; IAA7, the white lupin IAA7/axr2 gene promoter:GUS. Photographs are representative of at least five roots representing individual events.
Although microRNA (miRNA) involvement in P stress is addressed elsewhere, it is worthwhile to note that Zhu et al. (2010) evaluated the expression of miRNAs in P-stressed lupin. As expected, miR399 had enhanced expression in P-stressed plants. However, in relation to auxin, the authors found that the lupin NAC domain-containing NAC1 gene, the target for miR164, was up-regulated in tissues under P deficiency while miR164 had reduced expression. Transcripts of miR164 mediate the cleavage of NAC1 transcripts to direct auxin-dependent signaling for lateral root formation (Xie et al., 2000, 2002; Guo et al., 2005; Zhu et al., 2010). In Arabidopsis, NAC1 acts as a transcriptional activator to transmit auxin signals for lateral root development. NAC1 mRNA accumulates mainly in roots, with greatest expression at lateral root initiation sites. In addition, there is a positive correlation between NAC1 mRNA levels and lateral root numbers (Xie et al., 2000). Guo et al. (2005) found that transgenic Arabidopsis overexpressing miR164, which targets NAC1 for degradation, exhibited reduced lateral roots, whereas mutants having reduced miR164 accumulated higher levels of NAC1 mRNA and produced more lateral roots. Evidence suggests that miR164 acts as a negative regulator in auxin-mediated lateral root formation in Arabidopsis. Zhu et al. (2010) found that the lupin NAC1 gene was up-regulated in tissues under P deficiency while miR164 expression was reduced under P deficiency, suggesting that miR164 and NAC1 may play roles in auxin-mediated cluster root formation in white lupin.
In their classic study of the physiology of cluster roots, Neumann et al. (2000) found that the addition of cytokinins to lupin significantly reduced the number of emerged cluster roots and cluster rootlet elongation. They also found elevated levels of cytokinin in 4-week-old P-deficient white lupin roots as compared with P-sufficient roots. They postulated that auxin stimulates the emergence of cluster rootlets in P-deficient plants, which results in increased production of cytokinin due to the numerous emerged root tips. In mature segments of P-induced cluster roots, we have found ESTs that annotate to cytokinin oxidase (CKX; Uhde-Stone et al., 2003b), suggesting that cytokinins are involved in cluster root development and maturation. We have recently transformed white lupin roots with a white lupin CKX:GUS reporter and a Medicago cytokinin receptor (CRE):GUS reporter. Initial results show that CKX and CRE reporter genes respond to the P status of the plant. CKX reporter activity appears to be reduced in P-deficient roots, while CRE reporter activity appears to be enhanced (Fig. 2). The CRE reporter studies imply that P-stressed roots have heightened sensitivity to P stress while CKX expression may be impaired by low P. These results are not congruent with results from Arabidopsis. This may be due to inherent differences in P stress cytokinin signaling between Arabidopsis and lupin.
Although strong correlative physiological and gene expression data suggest a critical role of auxins and cytokinins in P stress-induced cluster root development, definitive genetic and biochemical experiments have yet to be performed. Salient questions to be addressed include the following. What is/are the internal signal(s) that initiate(s) the cascade of developmental, biochemical, and genetic changes resulting in cluster roots? How is determinancy in cluster roots regulated? Are reactive oxygen and programmed cell death part of the cluster root developmental phenomenon? Can gene knockdown and overexpression studies be harnessed to definitively answer questions regarding the role of growth hormones in cluster root development and function? Can the genetic control mechanisms(s) for cluster root formation be identified and used to enhance P uptake and P use efficiency in other plant species?
SUGARS REGULATE CLUSTER ROOT DEVELOPMENT AND FUNCTION
Suc, derived from photosynthate, and miRNAs have been implicated as critical molecules signaling the P status of plants. Under P-deficient conditions, an increase in Suc biosynthesis has been observed in the leaves of a range of plant species (Foyer and Spencer, 1986; Cakmak et al., 1994; Ciereszko et al., 1996; Morcuende et al., 2007; Müller et al., 2007). Moreover, translocation of mobile carbohydrates, primarily in the form of Suc, via the phloem to the roots increased from either reduced shoot demand or increased root demand (Cakmak et al., 1994; Hermans et al., 2006). Chiou and Bush (1998) showed that Suc could act as a signal molecule in assimilate partitioning. A growing body of evidence now supports Suc derived from photosynthate as part of the systemic signaling leading to P deficiency-induced increase in lateral root formation and increased root hair density (Hermans et al., 2006; Jain et al., 2007; Karthikeyan et al., 2007; Zhou et al., 2008). To test the role of photosynthate and phloem Suc on P stress transcript induction, shoots of white lupin plants were either darkened or had stems girdled to block phloem transport, and the expression of P starvation-induced genes in roots was evaluated (Liu et al., 2005; Tesfaye et al., 2007). Both treatments reduced the expression of a number of genes in P-stressed roots to nondetectable levels within 1 to 4 h. Returning darkened plants to light rapidly restored P starvation-induced gene expression in roots. Zhou et al. (2008) showed that sugars are required for white lupin response to P deficiency, including cluster root formation and the expression of P starvation-induced genes. White lupin plants were grown in vitro on P-sufficient or P-deficient medium supplemented with Suc for 4 weeks. Suc supply stimulated cluster root formation in plants on both P-sufficient and P-deficient agar media. Notably, cluster roots did not form on the P-sufficient medium without Suc added. Transcription of P deficiency-induced LaPT1 and LaPEPC3 was magnified by the combination of P limitation and Suc feeding, and LaSAP was stimulated by Suc supply independently of P supply. These results suggest that at least two sugar-signaling mechanisms affect P starvation responses in white lupin roots. One mechanism regulates cluster root development and LaSAP expression, when P-sufficient roots receive sugar as a signal. The other mechanism controls LaPT1 and LaPEPC3 expression, which acts when P is insufficient.
Moreover, Suc has been shown in Arabidopsis to be required for enhanced expression of P starvation-induced genes (Franco-Zorrilla et al., 2005; Karthikeyan et al., 2007; Müller et al., 2007). In P-stressed Arabidopsis roots, P starvation-induced genes showed further enhanced expression when supplemented with 3% Suc (Franco-Zorrilla et al., 2005; Karthikeyan et al., 2007). Müller et al. (2007) evaluated the interaction between P and Suc in Arabidopsis leaves. Using a 2-fold cutoff, they identified 149 transcripts that were regulated by the interaction between P starvation and Suc availability. One group of 47 genes having increased expression in response to P deficiency was further enhanced by Suc. Many of the transcripts in this group encode proteins involved in P remobilization and carbohydrate metabolism. Although Suc appears to be important in signaling P status and the full expression of P starvation-induced genes, the mechanism remains elusive. The Suc-nonfermenting1 kinase:calcineurin B-like protein kinase (SNF1:CIPK) pathway has been implicated as the transduction system for sugar signaling (Hummel et al., 2009; Rosa et al., 2009; Meyer et al., 2010). Whether the SNF1:CIPK pathway regulates sugar signaling during P starvation deserves further investigation.
NITRIC OXIDE PRODUCTION IN CLUSTER ROOTS
In recent years, nitric oxide (NO) has been recognized as a diffusible bioactive molecule that functions in numerous plant processes (Durner and Klessig, 1999; Wojtaszek, 2000; Lamattina et al., 2003). Several reports indicate that NO may play a role in lateral root development (Pagnussat et al., 2002; Correa-Aragunde et al., 2004). Pagnussat et al. (2002) demonstrated that NO is required for auxin-induced adventitious root development in cucumber (Cucumis sativus). Application of NO donors induced adventitious root initiation in cucumber explants, and accumulation of endogenous NO was detected in explants after IAA treatment (Pagnussat et al., 2002). Application of the NO donor sodium nitroprusside to tomato (Solanum lycopersicum) induced lateral root emergence, whereas depletion of endogenous NO with the NO scavenger 2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide completely arrested lateral root emergence (Correa-Aragunde et al., 2004), a very similar effect to that of auxin on lateral root development. Correa-Aragunde et al. (2006) further showed that NO mediates the expression of cell cycle-regulatory genes in tomato pericycle cells to induce lateral root primordia formation, suggesting a NO-mediated auxin-dependent cell cycle gene regulation in tomato. Recently, NO was demonstrated to be involved in adaptive responses of white lupin to P starvation (Wang et al., 2010). Accumulation of NO was found in P-deficient white lupin roots, particularly in cluster rootlet primordia prior to and during emergence (Fig. 3). The P deficiency-induced increase in NO production was inhibited by antagonists of NO synthase and xanthine oxidase. Furthermore, the application of the exogenous NO donor sodium nitroprusside enhanced the formation of cluster roots in P-deficient white lupin but not in P-sufficient plants. These studies, together with the findings of Correa-Aragunde et al. (2006) in tomato, support the hypothesis that NO seems to be required in lateral root initiation and root primordia formation. In addition to studies on the role of NO in cluster root formation, Wang et al. (2010) also investigated the enzymes putatively involved in NO generation in cluster roots. Inhibitor studies and gene expression analyses show that a NO-synthase-like enzyme and xanthine oxidoreductase are required for the accumulation of NO in cluster roots. The role of NO in root development acclimation to abiotic stress is not well defined and deserves further attention in white lupin and other species.
Figure 3.
NO fluorescence of cluster roots of white lupin induced by P deficiency at different growth stages. A and B, Juvenile cluster roots. C, Growing cluster roots. D, Mature cluster roots with root hairs. E, Senescent cluster roots. Cluster root segments were incubated in 20 μm 4,5-diaminofluorescein in a solution containing 20 mm HEPES-NaOH, pH 7.5, for 40 min. Fluorescence was detected by confocal laser scanning microscopy.
TRANSCRIPTION FACTORS INVOLVED IN P PERCEPTION
The regulation of gene expression during plant stress is controlled by the transcriptional activation or repression of genes (Chen et al., 2002; Hammond et al., 2004; Valdés-López et al., 2008; Valdés-López and Hernández, 2008). Transcription factors (TFs) are key global regulators of gene expression and are known to play central roles in most biological processes, including the regulation of plant gene expression in response to numerous biotic and abiotic stresses (Sreenivasulu et al., 2007; Century et al., 2008; Hirayama and Shinozaki, 2010). In Arabidopsis alone, approximately 6% (about 1,800) of the total number of genes are composed of TFs, including about 72 WRKYs, more than 600 zinc finger proteins, and 133 MYB TFs (Eulgem et al., 2000; Riechmann et al., 2000; Stracke et al., 2001; Guo et al., 2005). In a microarray analysis, approximately 30% of the 333 TF genes included on the array were up- or down-regulated 2-fold or more during P stress in Arabidopsis (Wu et al., 2003). Misson et al. (2005) and Müller et al. (2007) also reported up to 80 P stress-responsive TF genes in Arabidopsis. Graham et al. (2006) discovered through bioinformatic analysis of P stress-induced genes in Arabidopsis, Medicago, Glycine, Phaseolus, and Lupinus that they share in common TF families encoding WRKYs, MYBs, GRAS, zinc finger proteins, and b-HLH proteins, which respond to plant P status. For details on specific TFs implicated in plant acclimation to P deficiency, the reader is referred to several comprehensive reviews that cover the primary literature (Doerner, 2008; Yuan and Liu, 2008; Yang and Finnegan, 2010).
The classic example of transcriptional regulation of P-responsive genes was delineated through studies of the MYB coiled-coil TF phosphate starvation response gene PHR1 (Rubio et al., 2001; Miura et al., 2005; Nilsson et al., 2007; Valdés-López et al., 2008). Rubio et al. (2001) identified an Arabidopsis mutant, phr1, that when grown under P deficiency had reduced accumulation of anthocyanin and defective expression of P deficiency response genes. These results indicated that PHR1 was a positive regulator of P-responsive gene expression. PHR1 protein binds to an imperfect palindromic consensus cis-element (5′-GNATATNC-3′) found in the promoters of numerous, but not all, P deficiency response genes (Hammond et al., 2003; Misson et al., 2005; Morcuende et al., 2007). Knockdown of PHR1 expression mimics the phr1 mutant, while overexpression of PHR1 results in increased P concentration and enhanced expression of P deficiency response genes (Nilsson et al., 2007). Homologs of PHR1 have been found in numerous species, including rice (Oryza sativa), bean (Phaseolus vulgaris), and lupin (Valdés-López et al., 2008; Zhou et al., 2008; Zinn et al., 2009). Analysis of the Arabidopsis genome showed that the P1BS element appears to be specifically overrepresented in approximately 45% of P-responsive genes (Hammond et al., 2004; Misson et al., 2005; Müller et al., 2007). Mutation in either PHR1 or the P1BS element suppresses the expression of genes in Arabidopsis whose promoters contain the P1BS element during P starvation (Rubio et al., 2001; Franco-Zorrilla et al., 2004). Schünmann et al. (2004) observed that the P starvation-induced barley (Hordeum vulgare) phosphate transporter gene, HvPht1;1, lost the response to P starvation when the P1BS elements were mutated, referring to a conserved role of the P1BS element in the expression of P-regulated genes in monocots. Three white lupin genes (LaSAP1, LaPT1, and LaMATE) have been well characterized as up-regulated in P-deficient cluster roots. The promoters of these genes contain one or more P1BS elements (Liu et al., 2001; Miller et al., 2001; Uhde-Stone et al., 2005). To investigate the functionality of the P1BS element in the P regulation of gene expression in lupin, Zinn et al. (2009) analyzed the promoter region of the LaSAP1 gene. They found that the induced expression of LaSAP1 in P-deficient cluster roots requires the presence of a functional P1BS element located within the promoter. Aside from P1BS element analysis, the authors found a defined domain located within the promoter region of LaSAP1 that specifically interacted with nuclear protein extracts from P-sufficient roots, suggesting the involvement of a TF in negative regulation of gene expression. We have isolated a P starvation-induced Pho85-like gene that contains four P1BS elements in the promoter region. Through a series of P1BS mutations fused to a GUS reporter gene, our preliminary study showed that P1BS elements are required to modulate the induced expression of Pho85-like in response to P starvation (L. Cheng and C. Vance, unpublished data).
Recently, Yamagishi et al. (2011) reported on a survey of signal perception genes in white lupin. They found four PHR-like MYB TFs, none of which showed increased expression under low P. In addition, they found 29 R2R3-MYB genes, four of which had increased expression under P deficiency. The transcriptional profiling of another 15 signaling genes showed that transcription of one calmodulin gene, LaCaM, was enhanced under P deficiency in cluster roots. This limited study provides a valuable starting point for further research on TF genes and signal transduction.
OVERVIEW
P is a critical element for plant growth and is frequently the limiting nutrient in many soils. Continued production and application of P fertilizer relies on a nonrenewable resource that will peak in about 2050. This will result in significantly increased cost, particularly for developing countries. Significant research efforts in plant acclimation to P stress show that many suites of genes regulated in a coordinated fashion act to modify root growth and development as well as metabolic pathways. Studies of white lupin offer a crop model species as an alternative to Arabidopsis. Development of cluster roots in other species may be a vehicle for the development of crop plants with more efficient P acquisition and use. Highly P-efficient plants could reduce the need for P fertilizer in the developed world, thereby ameliorating the overuse of P, while concurrently enhancing yield in the developing world, where P is frequently unavailable.
References
- Atkins CA, Smith PMC. (2007) Translocation in legumes: assimilates, nutrients, and signaling molecules. Plant Physiol 144: 550–561 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cakmak I, Hengeler C, Marschner H. (1994) Changes in phloem export of sucrose in leaves in response to phosphorus, potassium and magnesium-deficiency in bean-plants. J Exp Bot 45: 1251–1257 [Google Scholar]
- Century K, Reuber TL, Ratcliffe OJ. (2008) Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products. Plant Physiol 147: 20–29 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA, et al. (2002) Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14: 559–574 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chiou T-J, Bush DR. (1998) Sucrose is a signal molecule in assimilate partitioning. Proc Natl Acad Sci USA 95: 4784–4788 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ciereszko I, Gniazdowska A, Mikulska M, Rychter AM. (1996) Assimilate translocation in bean plants (Phaseolus vulgaris L.) during phosphate deficiency. J Plant Physiol 149: 343–348 [Google Scholar]
- Cordell D, Drangert JO, White S. (2009) The story of phosphorus: global food security and food for thought. Glob Environ Change 19: 292–305 [Google Scholar]
- Correa-Aragunde N, Graziano M, Chevalier C, Lamattina L. (2006) Nitric oxide modulates the expression of cell cycle regulatory genes during lateral root formation in tomato. J Exp Bot 57: 581–588 [DOI] [PubMed] [Google Scholar]
- Correa-Aragunde N, Graziano M, Lamattina L. (2004) Nitric oxide plays a central role in determining lateral root development in tomato. Planta 218: 900–905 [DOI] [PubMed] [Google Scholar]
- Dinkelaker B, Hengeler C, Marschner H. (1995) Distribution and function of proteoid and other root clusters. Bot Acta 108: 183–200 [Google Scholar]
- Dinkelaker B, Römheld V, Marschner H. (1989) Citric acid exudation and precipitation of calcium citrate in the rhizosphere of white lupin (Lupinus albus L.). Plant Cell Environ 12: 265–292 [Google Scholar]
- Doerner P. (2008) Phosphate starvation signaling: a threesome controls systemic P(i) homeostasis. Curr Opin Plant Biol 11: 536–540 [DOI] [PubMed] [Google Scholar]
- Drew MC. (1975) Comparison of the effects of a localized supply of phosphate, nitrate, ammonium and potassium on the growth of the seminal root system, and the shoot, in barley. New Phytol 75: 479–490 [Google Scholar]
- Durner J, Klessig DF. (1999) Nitric oxide as a signal in plants. Curr Opin Plant Biol 2: 369–374 [DOI] [PubMed] [Google Scholar]
- Eulgem T, Rushton PJ, Robatzek S, Somssich IE. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci 5: 199–206 [DOI] [PubMed] [Google Scholar]
- Foyer C, Spencer C. (1986) The relationship between phosphate status and photosynthesis in leaves: effects on intracellular orthophosphate distribution, photosynthesis and assimilate partitioning. Planta 167: 369–375 [DOI] [PubMed] [Google Scholar]
- Franco-Zorrilla JM, González E, Bustos R, Linhares F, Leyva A, Paz-Ares J. (2004) The transcriptional control of plant responses to phosphate limitation. J Exp Bot 55: 285–293 [DOI] [PubMed] [Google Scholar]
- Franco-Zorrilla JM, Martín AC, Leyva A, Paz-Ares J. (2005) Interaction between phosphate-starvation, sugar, and cytokinin signaling in Arabidopsis and the roles of cytokinin receptors CRE1/AHK4 and AHK3. Plant Physiol 138: 847–857 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gardner WK, Barber DA, Parbery DG. (1983) The acquisition of phosphorus by Lupinus albus L. III. The probable mechanism by which phosphorus movement in the soil/root interface is enhanced. Plant Soil 70: 107–124 [Google Scholar]
- Gilbert GA, Allan DA, Vance CP. (1997) Phosphorus deficiency in white lupin alters root development and metabolism. Flores HE, Lynch D, Eissenstat D, eds, Radical Biology: Advances and Perspectives on the Function of Plant Roots. American Society of Plant Physiologists, Rockville, MD, pp 92–103 [Google Scholar]
- Gilbert GA, Knight JD, Vance CP, Allan DL. (2000) Proteoid root development of phosphorus deficient lupin is mimicked by auxin and phosphonate. Ann Bot (Lond) 85: 921–928 [Google Scholar]
- Graham MA, Ramirez M, Valdés-López O, Lara M, Tesfaye M, Vance CP, Hernandez G. (2006) Identification of candidate phosphorus stress induced genes in Phaseolus vulgaris through clustering analysis across several plant species. Funct Plant Biol 33: 789–797 [DOI] [PubMed] [Google Scholar]
- Guo HS, Xie Q, Fei JF, Chua NH. (2005) MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 17: 1376–1386 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hammond JP, Bennett MJ, Bowen HC, Broadley MR, Eastwood DC, May ST, Rahn C, Swarup R, Woolaway KE, White PJ. (2003) Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol 132: 578–596 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hammond JP, Broadley MR, White PJ. (2004) Genetic responses to phosphorus deficiency. Ann Bot (Lond) 94: 323–332 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hermans C, Hammond JP, White PJ, Verbruggen N. (2006) How do plants respond to nutrient shortage by biomass allocation? Trends Plant Sci 11: 610–617 [DOI] [PubMed] [Google Scholar]
- Hirayama T, Shinozaki K. (2010) Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J 61: 1041–1052 [DOI] [PubMed] [Google Scholar]
- Hummel M, Rahamani F, Smeekens S, Hanson J. (2009) Sucrose mediated starvation in translational control. Ann Bot (Lond) 104: 1–7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jain A, Poling MD, Karthikeyan AS, Blakeslee JJ, Peer WA, Titapiwatanakun B, Murphy AS, Raghothama KG. (2007) Differential effects of sucrose and auxin on localized phosphate deficiency-induced modulation of different traits of root system architecture in Arabidopsis. Plant Physiol 144: 232–247 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnson JF, Vance CP, Allan DL. (1996) Phosphorus deficiency in Lupinus albus: altered lateral root development and enhanced expression of phosphoenolpyruvate carboxylase. Plant Physiol 112: 31–41 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kamiya N, Itoh JI, Morikami A, Nagato Y, Matsuoka M. (2003) The SCARECROW gene’s role in asymmetric cell divisions in rice plants. Plant J 36: 45–54 [DOI] [PubMed] [Google Scholar]
- Karthikeyan AS, Varadarajan DK, Jain A, Held MA, Carpita NC, Raghothama KG. (2007) Phosphate starvation responses are mediated by sugar signaling in Arabidopsis. Planta 225: 907–918 [DOI] [PubMed] [Google Scholar]
- Keerthisinghe G, Hocking PJ, Ryan PR, Delhaize E. (1998) Effect of phosphorus supply on the formation and function of proteoid roots of white lupin (Lupinus albus L.). Plant Cell Environ 21: 467–478 [Google Scholar]
- Laajanen K, Vuorinen I, Salo V, Juuti J, Raudaskoski M. (2007) Cloning of Pinus sylvestris SCARECROW gene and its expression pattern in the pine root system, mycorrhiza and NPA-treated short roots. New Phytol 175: 230–243 [DOI] [PubMed] [Google Scholar]
- Lamattina L, García-Mata C, Graziano M, Pagnussat G. (2003) Nitric oxide: the versatility of an extensive signal molecule. Annu Rev Plant Biol 54: 109–136 [DOI] [PubMed] [Google Scholar]
- Lambers H, Shane MW, Cramer MD, Pearse SJ, Veneklaas EJ. (2006) Root structure and functioning for efficient acquisition of phosphorus: matching morphological and physiological traits. Ann Bot (Lond) 98: 693–713 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Li H, Shen J, Zhang F, Tang C, Lambers H. (2008) Is there a critical level of shoot phosphorus concentration for cluster-root formation in Lupinus albus? Funct Plant Biol 35: 328–336 [DOI] [PubMed] [Google Scholar]
- Liu J, Samac DA, Bucciarelli B, Allan DL, Vance CP. (2005) Signaling of phosphorus deficiency-induced gene expression in white lupin requires sugar and phloem transport. Plant J 41: 257–268 [DOI] [PubMed] [Google Scholar]
- Liu J, Uhde-Stone C, Li A, Vance CP, Allan DL. (2001) A phosphate transporter with enhanced expression in proteoid roots of white lupin (Lupinus albus L.). Plant Soil 237: 257–266 [Google Scholar]
- López-Bucio J, Cruz-Ramírez A, Herrera-Estrella L. (2003) The role of nutrient availability in regulating root architecture. Curr Opin Plant Biol 6: 280–287 [DOI] [PubMed] [Google Scholar]
- Marschner H, Römheld V, Cakmak I. (1987) Root-induced changes of nutrient availability in the rhizosphere. J Plant Nutr 10: 1175–1184 [Google Scholar]
- Meyer AK, Longin CFH, Klose C, Hermann A. (2010) New regulator for energy signaling pathway in plants highlights conservation among species. Sci Signal 3: jc5. [DOI] [PubMed] [Google Scholar]
- Miller SS, Liu J, Allan DL, Menzhuber CJ, Fedorova M, Vance CP. (2001) Molecular control of acid phosphatase secretion into the rhizosphere of proteoid roots from phosphorus-stressed white lupin. Plant Physiol 127: 594–606 [PMC free article] [PubMed] [Google Scholar]
- Misson J, Raghothama KG, Jain A, Jouhet J, Block MA, Bligny R, Ortet P, Creff A, Somerville S, Rolland N, et al. (2005) A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc Natl Acad Sci USA 102: 11934–11939 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miura K, Rus A, Sharkhuu A, Yokoi S, Karthikeyan AS, Raghothama KG, Baek D, Koo YD, Jin JB, Bressan RA, et al. (2005) The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses. Proc Natl Acad Sci USA 102: 7760–7765 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Morcuende R, Bari R, Gibon Y, Zheng W, Pant BD, Bläsing O, Usadel B, Czechowski T, Udvardi MK, Stitt M, et al. (2007) Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ 30: 85–112 [DOI] [PubMed] [Google Scholar]
- Müller R, Morant M, Jarmer H, Nilsson L, Nielsen TH. (2007) Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. Plant Physiol 143: 156–171 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Neumann G, Martinoia E. (2002) Cluster roots: an underground adaptation for survival in extreme environments. Trends Plant Sci 7: 162–167 [DOI] [PubMed] [Google Scholar]
- Neumann G, Massonneau A, Langlade N, Dinkelaker C, Romheld V, Martinoia E. (2000) Physiological aspects of cluster root function and development in phosphorus-deficient white lupin (Lupinus albus L.). Ann Bot (Lond) 85: 909–919 [Google Scholar]
- Neumann G, Massonneau A, Martinoia E, Römheld V. (1999) Physiological adaptation to phosphorus deficiency during proteoid root development in white lupin. Planta 208: 373–382 [Google Scholar]
- Nilsson L, Müller R, Nielsen TH. (2007) Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana. Plant Cell Environ 30: 1499–1512 [DOI] [PubMed] [Google Scholar]
- Pagnussat GC, Simontacchi M, Puntarulo S, Lamattina L. (2002) Nitric oxide is required for root organogenesis. Plant Physiol 129: 954–956 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Petricka JJ, Benfey PN. (2008) Root layers: complex regulation of developmental patterning. Curr Opin Genet Dev 18: 354–361 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pysh LD, Wysocka-Diller JW, Camilleri C, Bouchez D, Benfey PN. (1999) The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J 18: 111–119 [DOI] [PubMed] [Google Scholar]
- Reymond M, Svistoonoff S, Loudet O, Nussaume L, Desnos T. (2006) Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant Cell Environ 29: 115–125 [DOI] [PubMed] [Google Scholar]
- Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105–2110 [DOI] [PubMed] [Google Scholar]
- Rodriguez-Medina C, Atkins CA, Mann AJ, Jordan ME, Smith PMC. (2011) Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.). BMC Plant Biol 11: 36. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rosa M, Prado C, Podazza G, Interdonato R, González JA, Hilal M, Prado FE. (2009) Soluble sugars: metabolism, sensing and abiotic stress. A complex network in the life of plants. Plant Signal Behav 4: 388–393 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rubio V, Linhares F, Solano R, Martín AC, Iglesias J, Leyva A, Paz-Ares J. (2001) A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev 15: 2122–2133 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sassa N, Matsushita Y, Nakamura T, Nyunoya H. (2001) The molecular characterization and in situ expression pattern of pea SCARECROW gene. Plant Cell Physiol 42: 385–394 [DOI] [PubMed] [Google Scholar]
- Sbabou L, Bucciarelli B, Miller S, Liu J, Berhada F, Filali-Maltouf A, Allan D, Vance C. (2010) Molecular analysis of SCARECROW genes expressed in white lupin cluster roots. J Exp Bot 61: 1351–1363 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schünmann PHD, Richardson AE, Vickers CE, Delhaize E. (2004) Promoter analysis of the barley Pht1;1 phosphate transporter gene identifies regions controlling root expression and responsiveness to phosphate deprivation. Plant Physiol 136: 4205–4214 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shane MW, De Vos M, De Roock S, Lambers H. (2003) Shoot phosphorus status regulates citrate exudation and cluster root growth in divided root systems of Lupinus albus. Plant Cell Environ 26: 265–273 [Google Scholar]
- Shane MW, Lambers H. (2005) Cluster roots: a curiosity in context. Plant Soil 274: 99–123 [Google Scholar]
- Shu L, Shen J, Rengel Z, Tang C, Zhang F. (2007) Cluster root formation by Lupinus albus is modified by stratified application of phosphorus in a split-root system. J Plant Nutr 30: 271–288 [Google Scholar]
- Skene KR, James WM. (2000) A comparison of the effects of auxin on cluster root initiation and development in Grevillea robusta Cunn. ex R. Br. (Proteaceae) and the genus Lupinus (Leguminosae). Plant Soil 219: 221–229 [Google Scholar]
- Sreenivasulu N, Sopory SK, Kavi Kishor PB. (2007) Deciphering the regulatory mechanisms of abiotic stress tolerance in plants by genomic approaches. Gene 388: 1–13 [DOI] [PubMed] [Google Scholar]
- Steen I. (1998) Phosphorus availability in the 21st century: management of a non-renewable resource. Phosphorus Potassium 217: 25–31 [Google Scholar]
- Stracke R, Werber M, Weisshaar B. (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol 4: 447–456 [DOI] [PubMed] [Google Scholar]
- Svistoonoff S, Creff A, Reymond M, Sigoillot-Claude C, Ricaud L, Blanchet A, Nussaume L, Desnos T. (2007) Root tip contact with low-phosphate media reprograms plant root architecture. Nat Genet 39: 792–796 [DOI] [PubMed] [Google Scholar]
- Tesfaye M, Liu J, Allan DL, Vance CP. (2007) Genomic and genetic control of phosphate stress in legumes. Plant Physiol 144: 594–603 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ticconi CA, Delatorre CA, Lahner B, Salt DE, Abel S. (2004) Arabidopsis pdr2 reveals a phosphate-sensitive checkpoint in root development. Plant J 37: 801–814 [DOI] [PubMed] [Google Scholar]
- Ticconi CA, Lucero RD, Sakhonwasee S, Adamson AW, Creff A, Nussaume L, Desnos T, Abel S. (2009) ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability. Proc Natl Acad Sci USA 106: 14174–14179 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tiessen H. (2008) Phosphorus in the global environment. White PJ, Hammond JP, eds, Ecophysiology of Plant-Phosphorus Interactions. Springer, New York, pp 1–8 [Google Scholar]
- Uhde-Stone C, Gilbert G, Johnson JMF, Litjens R, Zinn KE, Temple SJ, Vance CP, Allan DL. (2003a) Acclimation of white lupin to phosphorus deficiency involves enhanced expression of genes related to organic acid metabolism. Plant Soil 248: 99–116 [Google Scholar]
- Uhde-Stone C, Liu J, Zinn KE, Allan DL, Vance CP. (2005) Transgenic proteoid roots of white lupin: a vehicle for characterizing and silencing root genes involved in adaptation to P stress. Plant J 44: 840–853 [DOI] [PubMed] [Google Scholar]
- Uhde-Stone C, Zinn KE, Ramirez-Yáñez M, Li A, Vance CP, Allan DL. (2003b) Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency. Plant Physiol 131: 1064–1079 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ. (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963–1971 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Valdés-López O, Arenas-Huertero C, Ramírez M, Girard L, Sánchez F, Vance CP, Luis Reyes J, Hernández G. (2008) Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots. Plant Cell Environ 31: 1834–1843 [DOI] [PubMed] [Google Scholar]
- Valdés-López O, Hernández G. (2008) Transcriptional regulation and signaling in phosphorus starvation: what about legumes? J Integr Plant Biol 50: 1213–1222 [DOI] [PubMed] [Google Scholar]
- Vance CP, Uhde-Stone C, Allan DL. (2003) Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. New Phytol 157: 423–447 [DOI] [PubMed] [Google Scholar]
- Wang BL, Tang XY, Cheng LY, Zhang AZ, Zhang WH, Zhang FS, Liu JQ, Cao Y, Allan DL, Vance CP, et al. (2010) Nitric oxide is involved in phosphorus deficiency-induced cluster-root development and citrate exudation in white lupin. New Phytol 187: 1112–1123 [DOI] [PubMed] [Google Scholar]
- Wasaki J, Yamamura T, Shinano T, Osaki M. (2003) Secreted acid phosphatase is expressed in cluster roots of lupin in response to phosphorus deficiency. Plant Soil 248: 129–136 [Google Scholar]
- Watt M, Evans JR. (1999) Linking development and determinacy with organic acid efflux from proteoid roots of white lupin grown with low phosphorus and ambient or elevated atmospheric CO2 concentration. Plant Physiol 120: 705–716 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wojtaszek P. (2000) Nitric oxide in plants: to NO or not to NO. Phytochemistry 54: 1–4 [DOI] [PubMed] [Google Scholar]
- Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F, Deng XW. (2003) Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol 132: 1260–1271 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Xie Q, Frugis G, Colgan D, Chua NH. (2000) Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev 14: 3024–3036 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Xie Q, Guo HS, Dallman G, Fang S, Weissman AM, Chua NH. (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 419: 167–170 [DOI] [PubMed] [Google Scholar]
- Yamagishi M, Zhou K, Osaki M, Miller SS, Vance CP. (2011) Real-time RT-PCR profiling of transcription factors including 34 MYBs and signaling components in white lupin reveals their P status dependent and organ-specific expression. Plant Soil 342: 481–493 [Google Scholar]
- Yang XJ, Finnegan PM. (2010) Regulation of phosphate starvation responses in higher plants. Ann Bot (Lond) 105: 513–526 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yuan H, Liu D. (2008) Signaling components involved in plant responses to phosphate starvation. J Integr Plant Biol 50: 849–859 [DOI] [PubMed] [Google Scholar]
- Zhou K, Yamagishi M, Osaki M, Masuda K. (2008) Sugar signalling mediates cluster root formation and phosphorus starvation-induced gene expression in white lupin. J Exp Bot 59: 2749–2756 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhu YY, Zeng HQ, Dong CX, Yin XM, Shen QR, Yang ZM. (2010) microRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.). Plant Sci 178: 23–29 [Google Scholar]
- Zinn KE, Liu J, Allan DL, Vance CP. (2009) White lupin (Lupinus albus) response to phosphorus stress: evidence for complex regulation of LaSAP1. Plant Soil 322: 1–15 [Google Scholar]


