Table 1.
Details of the 15 data sets used in the analyses described in the main text. When more than one “subpopulation” is included in a data set, each informs its own genealogy using the shared-rate approach.
| Data sets | Data set name | Genotypes | Number of sequences | HBeAg+ve | HBeAg−ve | Recombinants strains | Subpopulations per data set | ||
|---|---|---|---|---|---|---|---|---|---|
| Serially sampled Within Host and Family Transmission sequences | 1 | Within Host Genotype C | WH-C | C | 11 | 9 | 2 | 0 | 4 |
| 2 | Within Host Genotype D | WH-D | D | 27 | 21 | 6 | 0 | 13 | |
| 3 | Within Host recombinant sequences of Genotypes B and C | WH-BC | rBC | 16 | 1 | 15 | - | 8 | |
| 4 | Family Transmission sequences of Genotype D and recombinant sequences of Genotypes B and C | WH-Fa | D, rBC | 13 | 7 | 6 | 0 | 3 | |
| 5 | HBeAg+ve Within Host and Family Transmission sequences of Genotypes C, D and recombinant sequences of B and C | WH-HBeAg+ve | C, D, rBC | 54 | n/a | n/a | 0 | 3 | |
| 6 | HBeAg−ve Within Host and Family Transmission sequences comprised of recombinant genotype B and C | WH-HBeAg−ve | rBC | 34 | n/a | n/a | 0 | 9 | |
| Among Host epidemiologically unrelated sequences | 7 | Among Host Genotype A | AH-A | A | 37 | 37 | 0 | 5 | n/a |
| 8 | Among Host Genotype B | AH-B | B | 15 | 5 | 10 | - | n/a | |
| 9 | Among Host Genotype C | AH-C | C | 63 | 18 | 18 | - | n/a | |
| 10 | Among Host Genotype D | AH-D | D | 56 | 25 | 25 | - | n/a | |
| 11 | Among Host Genotype E | AH-E | E | 49 | 45 | 45 | 0 | n/a | |
| 12 | Among Host Genotype F | AH-F | F | 35 | 26 | 26 | 4 | n/a | |
| 13 | Among Host Genotype H | AH-H | H | 22 | 22 | 22 | 0 | n/a | |
| 14 | Among Host HBeAg+ve | AH-HBeAg+ve | C, D | 76 | n/a | n/a | n/a | n/a | |
| 15 | Among Host HBeAg−ve | AH-HBeAg−ve | C, D | 43 | n/a | n/a | n/a | n/a | |