Abstract
The characterization and prediction of the structures of metal silicon clusters is important for nanotechnology research because these clusters can be used as building blocks for nano devices, integrated circuits and solar cells. Several authors have postulated that there is a transition between exo to endo absorption of Cu in Sin clusters and showed that for n larger than 9 it is possible to find endohedral clusters. Unfortunately, no global searchers have confirmed this observation, which is based on local optimizations of plausible structures. Here we use parallel Genetic Algorithms (GA), as implemented in our MGAC software, directly coupled with DFT energy calculations to show that the global search of CuSin cluster structures does not find endohedral clusters for n < 8 but finds them for n ≥ 10.
Keywords: copper-silicon clusters, genetic algorithms, global optimization
Introduction
Silicon is the most important element in design of microelectronic components; therefore Si clusters have been studied from the experimental [1,2,3] and theoretical [4,5,6] points of view. These clusters are considered potential candidates as building blocks for well-controlled nanostructures. The basis to build clusters-assembled nanostructures is to define building blocks that are chemically stable and weakly interacting among them. Pure silicon clusters are chemically reactive, [7] but better stability can be reached by positioning a metal atom into the Sin clusters.
Many researches [8,9] have studied the growth behavior of transition metal (TM) silicon clusters and showed that TM-encapsulated cage-like clusters are always the magic clusters, i.e. the more stable ones, as the number of silicon atoms increases. During the last years the focus has been placed in better understanding TM doped silicon cage-like clusters, both experimentally [10,11,12] and computationally. [13,14,15,16] The TM atom has been found to be a good stabilizing factor for MSin clusters because of their size and d-band filling behavior. Beck [17] observed stable clusters TM-Sin (n=16-18, TM=Cr, Mo, W, Cu) of medium size. The mass spectra of CuSin show the most intense peak for CuSi10; no reactions between copper and silicon have been observed in the products with less than six silicon atoms and all products show only one copper atom.18 Another interesting discovery reported by Andriotis et al., [19] shows that silicon nanotubes might be stablizated by insertion of a linear chain of TM atoms. K. Koyasu et. al. [20] generated endohedral MSin clusters (M= Sc, Y, Lu, Ti, Zr, Hf, V, Nb and Ta) by double laser vaporization, and analyzed the MSin− photoelectric spectra, HOMO-LUMO gaps, and vertical detachment energies (VDE) in order to analyze their stability. Their results show that Sin is less reacting than the doping atom and that the M reactivity is sensitive to its placement in the cluster, a peripheral metal atom is more reactive than an encapsulated one. So, a transition to low reactivity of MSin clusters would be an indication of cage like MSin encapsulated clusters, which therefore will be preferable for using as nano structural building blocks. Several authors have [21, 22, 23, 24] investigated MSin clusters with 4, 6, 8, 10 and 12 silicon atoms using computational means. Both the computational and experimental results lead to several authors [20,18] to postulate that there is a transition from exo to endo in the absorption of a copper atom in a silicon clusters and showed that endohedric clusters appear only for n>9. Unfortunately, no global searchers have confirmed this observation, which is based on calculations for plausible structures. In this paper we report the global search for the structures of CuSin employing our Modified Genetic Algorithms (MGAC) package, [25, 26, 27] which uses the Parallel implementation of Genetic Algorithms (GA), [28, 29] directly coupled with DFT energy calculations.
Methods
In order to determine the most stable isomers, a stochastic method which uses a parallel genetic algorithm (GA) has been used. GA methods are based in the principle of survival of the fittest, considering that each string or genome represents a set of trial solutions candidate that at any generation compete with each other in the population for survival and produce offspring for the next generation by prescribed propagation rules. The clusters are represented by a genome of dimension 3N, where N is the number of atoms in the cluster, the genetic operators, mating, crossover, mutation, etc., have been constructed in such way that when they are applied to the a genome they produce a valid individual, i.e., a possible structure for the desired cluster size. The GA operations of mating, crossover, mutation and the “cut and slice” operator introduced by Johnston and Roberts [30] were used here to evolve one generation into the next one. The best individuals among the population, 50 % , are directly copied into the next generation, and the other 50 % are replaced applying the genetic operators. This technique is also known as elitism. The criteria for fitness probability, selection of the individuals and genetic operators are discussed in detail in Ref. [27]. The GA procedure was run several times to guarantee that the resulting structures are independent of the initial population. We ran the MGAC about five times per CuSin system, employing from 15 to 200 generations with about 10 individuals. The number of generations needed to achieve convergence was between 15 and 200 and the total number of computer processors employed ranges from 49 to 98. As shown in Table 1 the computational resources needed for these calculations are significant, therefore for the case of n=12 only limited runs could be performed due to the limitations in the computer resources available.
Table 1.
Computational and timing parameters used in the calculation of the structures of CuSi6, CuSi8, CuSi10 and CuSi12 atomic clusters using the MGAC method for global search and the CPMD method for the local optimization and energy calculations. The calculations were done using an energy cutoff of 100 Ry.
| System | Individuals in the population |
Number of computer processorsa |
Elapsed time per generationb |
Number of generations |
||
|---|---|---|---|---|---|---|
| Level 1 |
Level 2 |
Total | ||||
| CuSi6 | 14 | 7 | 7 | 49 | 24.00 | 15 |
| CuSi8 | 14 | 7 | 14 | 98 | 28.52 | 22 |
| CuSi10 | 10 | 5 | 16 | 80 | 9.00 | 200 |
| CuSi12 | 8 | 4 | 20 | 80 | 36.00 | 30 |
Level 2 of parallelization corresponds to the number of processors used for each CPMD calculation, while Level 1 is the number of ways in which the populations is divided.
The elapsed time is given in hours. The total execution time of the search is the time per generation times the number of generations needed to achieve convergence.
Our previous study on CuSin clusters [31] clearly demonstrated that when transition metals are included in the calculations it is necessary to directly couple the GA global optimization with the DFT method used for the energy calculations. [32, 33] All the energy calculations were done using the CPMD code. [34] The isomers selected by MGAC/CPMD calculations were analyzed, and their vibration frequencies evaluated to discriminate transition states (TS) from stable structures.
In this study we used the Goedecker et al. [35] pseudopotential, the PBE (Perdew-Burke-Ernzerhof) [36] exchange correlation functional with an energy cutoff (Ecut) of 100 Ry, and a cell length of 4 Å plus the largest dimension of the cluster. The pseudopotential was selected after comparing the rms (root mean square) between experimental and predicted bond lengths, binding energies, and vibrational frequencies, for Si2, Cu2, and SiCu, employing different density functional methods implemented in the CPMD code and several all electron methods, which include electron correlation. The results of this comparison are presented in Table 2, which shows that the selected combination, PBE/GO, is as good or better than any other DFT approach and better than most of the all electron approaches considered here.
Table 2.
rms between experimental and calculated geometry parameters (Re), binding energy (Eb), and vibrational frequencies (Freq) for Si2, Cu2 and SiCu systems with Ecut=100 Ry.
| Method |
Re [] |
Eb [eV] |
Freq [cm−1] |
|---|---|---|---|
| PBE/GO | 0.070 | 0.301 | 53 |
| BP/GO | 0.070 | 0.277 | 56 |
| LDA/GO | 0.098 | 0.547 | 62 |
| B3LYP/GEN | 0.040 | 0.162 | 16 |
| LCGTO-LSD | 0.020 | 0.520 | 49 |
| LCGTO-GGA | 0.050 | 0.180 | 60 |
|
All electron
calculation |
|||
| B3LYP/6-311+G(d) | 0.043 | 0.217 | 19 |
| MP4(6s,5p,3d,1f) | 0.019 | 0.149 | 2 |
| QCISD/6-311+G(d) | 0.038 | 0.420 | 16 |
| QCISD(T)/6-311+G(d) | 0.045 | 0.463 | 5 |
| CASSCF/CASPT2 | 0.010 | 0.265 | 56 |
| CASSCF/CASPT2+DK | 0.081 | 0.058 | 64 |
In this paper we have also evaluated the spin-density, the static dipole polarizabilities, inertial moments, and frequencies for each final CuSin structure, at the B3LYP/6-31+G* level of theory. All the DFT calculations have been done using the Gaussian package of programs. [37]
Results and Discussion
CuSi6 and CuSi8
Figures 1(a) and 1(b) show the structures of the six lowest energy isomers of CuSi6 and CuSi8, respectively. Structures CuSi6-d, CuSi6-f and CuSi8-a correspond to transition states, but several structures in the figures have not been previously reported; only CuSi6-a, CuSi6-b and CuSi8-a have been reported previously in the literature.[21] The CuSi6 isomers produced by MGAC/CPMD, show the building block of Si6-a or Si6-b from Ref. [38] with one copper atom attached on their periphery. The CuSi8 isomers can be thought as the product of the substitution of one silicon atom on Si9-a or Si9-b [38] by one Cu atom or the addition of one Cu atom on Si8-a.[38] CuSi6-e and CuSi6-f are mirror images, and CuSi6-b is similar to the structure of CuSi6+ reported by Gruene et. al. [39] Relaxation of CuSi8-a to the corresponding stable state changes its atomic binding energy from 4.671 to 4.661 eV.
Figure 1.
(a) CuSi6 and (b) CuSi8 structures obtained by the MGAC/CPMD, and their binding energy per atom. All energies in eV based on a Si atomic energies of −101.319 eV and Cu atomic energies of −1289.34 eV. Isomers marked with
are transition states (TS) presenting one imaginary frequency.
From Figures 1(a) and 1(b) it is apparent that all the low energy structures predicted here have the Cu atom in the periphery of the cluster, because the MGAC/CPMD performs a global search over all possible cluster configurations, this is a very strong evidence that endohedral configurations are not energetically favorable for these clusters. Moreover due to the relatively modest size of the calculations required for n=6 and n=8 we were able to perform several searchers confirming these findings.
The vibration spectra corresponding to structures CuSi6-b and CuSi8-b are depicted in Figures 2 and 3, respectively. Our predicted vibration spectra for CuSi6-b with the principal vibration mode of about 450 cm−1, is close to the corresponding principal vibration mode, about 430 cm−1 predicted for the CuSi6 cation. [39] Our predicted vibration spectra for CuSi8-b are very similar to the experimental spectra reported on reference [39] for CuSi8+. The four predicted and experimental modes are, 250 cm−1, 310 cm−1, 360 cm−1 and 440 cm−1; and 275 cm−1, 325 cm−1, 350 cm−1, 400-450 cm−1, respectively. Gruene et. al. [39] showed a theoretical structure different from CuSi8-b. In fact, we are reporting a new structure, CuSi8-b, whose theoretical spectrum reproduces better the experimental spectrum than that predicted by Gruene et. al. [39] for CuSi8+.
Figure 2.

Vibration spectra of CuSi6-b at B3LYP/6-31+G* level of theory. On the top right is the experimental spectra reported on Ref. [39] for CuSi6+.
Figure 3.

Vibrational spectra of CuSi8-b at B3LYP/6-31+G* level of theory. On the top right is the experimental spectra reported on Ref. [39] for CuSi8+.
CuSi10
Figure 4 depicts the structures of the twelve lowest energy isomers for CuSi10 with their binding energies. Most of the MGAC/CPMD isomers show a Si10-a cluster from Ref. 21 as building block with a Cu atom attached on its periphery, or a Si11 cluster from Ref. 21 with a substitution of one silicon atom by one copper atom. However MGAC/CPMD has found two cages like structures with endohedral copper and with binding energies in the order of 0.04 eV lower than the best isomer, Si10Cu-a in Figure 4.
Figure 4.
CuSi10 structures obtained by the MGAC/CPMD and their binding energy per atom. All energies in eV based on a Si atomic energies of −101.319 eV and Cu atomic energies of −1289.34 eV. Isomers marked with
are transition states (TS) presenting one imaginary frequency.
To compare our results with those from Ref. [40] the two cage structures, Cu@Si10-h and Cu@Si10-l were re-optimized using the B3LYP exchange correlation functional and the 6-31+G* basis set. Cu@Si10-l energy resulted only 0.049 eV lower than Cu@Si10-h energy, in agreement with the previous results by Hossain et. al. [23] Both of these isomers are TS for GO/PBE, but stable ones for B3LYP /6-31+G*. To verify that the structure Cu@Si10-h is a new structure that has not been reported before by King, [40] we tried a local optimization of the structure of Cu@Si10-h enforcing the D4d symmetry, as it was suggested by the topological model proposed in Ref. [40], but the optimization did not reach convergence for the model. This provides strong evidence that Cu@Si10-h is a truly new structure that has not been reported previously.
Figure 5 depicts the spin density for Cu@Si10-h and Cu@Si10-l. In Cu@Si10-l, the density is mostly localized in the three silicon atoms at the top and bottom of the cage, whereas in Cu@Si10-h the delocalization extends to the Cu atom.
Figure 5.

Spin density of Cu@Si10-h (right) and Cu@Si10-l (left) clusters obtained at B3LYP/6-31+G* level of theory. The isovalue of the contour map is at 0.001.
In agreement with previous reports, the MGAC/CPMD method is able to find endohedral structures for CuSi10, but in contrast with previous studies these structures are not postulated a priori and locally optimized, but are found automatically by the GA search.
CuSi12
Due to the very large computer time required, only two independent GA optimizations using two different seeds were performed for CuSi12. The optimizations were run for 30 and 14 generations respectively. The structures with the best energies are depicted in Figure 6, along with two cage type structures (Cu@Si12-a and Cu@Si12-h) that were constructed manually and locally optimized. The most stable isomer found by MGAC/CPMD, is 0.370 eV less stable that the best cage compound Cu@Si12-a, but many of the MGAC/CPMD isomers are more stable than the other cage configuration reported in the literature Cu@Si12-h.[22] Several of the isomers found by the MGAC/CPMD method show incipient cage features (for instance Cu@Si12-e and Cu@Si12-g), but clearly the number of generations used for these calculations are insufficient to find the best cage isomer (Cu@Si12-a). From these results it is apparent that our DFT method can predict cages structures as low energy ones like, Cu@Si12-a, but it appears that these structures are quite difficult to find using global optimization procedures, because they were not found by the limited MGAC/CPMD calculations performed here. Unfortunately more exhaustive calculations were not possible due to the limitations in the computer resources available.
Figure 6.
CuSi12 structures obtained by the MGAC/CPMD and their binding energy per atom. All energies in eV based on a Si atomic energies of −101.319 eV and Cu atomic energies of −1289.34 eV. Isomer (f) marked with
is a transition state (TS) presenting one imaginary frequency. Isomers marked with
have two imaginary frequencies.
Energetics and structure of Cu@Sin
The energetic parameters of the CuSin clusters depicted in Figures 1, 4, and 6 are reported in Table 3. Those parameters are the embedding energy, EE = E[Sin ] + E[Cu]− E [CuSin ] , where E[Sin ] is the energy of the most stable silicon cluster (Si6 and Si8 form Ref. [38] and Si10 and Si12 form Ref.[21], and E[Cu], is the energy of a cooper atom. EE represents the energy necessary to add (or remove) a copper atom to a Sin to from a CuSin cluster. The vertical ionization potential (VIP) and vertical electron affinity (VEA), and the HOMO-LUMO gaps for α and β electrons, εα and εβ are also reported in the Table. EE and VEA show the same trend, because the electronic configuration of copper is Ar [3d104s1], with one electron in the outer shell. EE is smaller for CuSi6, CuSi10, and CuSi12 than for CuSi8, by about 0.8 eV, 1.3 eV, and 0.6 eV respectively, which is an indication of the efficient elimination of the Cu atom on those systems. This is in agreement with the experimental observations from Jaeguer et al. [12], who detected abundance of Si6+ and Si10+ in the photo dissociation of CuSi6+ and CuSi10+.
Table 3.
Calculated embedding energies (EE), the vertical ionization potential (VIP), the vertical electron affinity (VEA) and α and β energy gaps for the SinCu clusters found by the MGAC-CPMD method. Their structures are given in Figs. 1, 2 and 3. The italicized entries correspond to those found by the MGAC-CPMD method that were not previously reported in the literature [21].
| Isomer | EE (eV) | VIP(eV) | VEA(eV) | εαgap (eV) | εβgap (eV) |
|---|---|---|---|---|---|
| CuSi6-a | 2.857 | 7.156 | 2.301 | 1.035 | 1.399 |
| CuSi6-b | 2.824 | 6.922 | 2.094 | 1.207 | 1.392 |
| CuSi6-c | 2.757 | 6.929 | 2.142 | 1.194 | 1.174 |
| CuSi6-d | 2.689 | 7.009 | 2.308 | 1.165 | 1.585 |
| CuSi6-e | 2.595 | 6.943 | 2.281 | 1.218 | 1.490 |
| CuSi6-f | 2.588 | 6.806 | 2.138 | 1.319 | 1.279 |
| CuSi8-a | 3.533 | 7.001 | 2.652 | 0.757 | 1.269 |
| CuSi8-b | 3.523 | 7.111 | 2.465 | 1.112 | 1.540 |
| CuSi8-c | 3.443 | 6.887 | 2.427 | 0.696 | 1.336 |
| CuSi8-d | 3.382 | 6.807 | 2.382 | 0.979 | 1.490 |
| Si8Cu-e | 3.345 | 6.943 | 2.293 | 1.374 | 0.885 |
| CuSi8-f | 3.279 | 6.893 | 2.498 | 0.897 | 0.956 |
| CuSi10-a | 2.269 | 6.557 | 2.338 | 1.395 | 1.377 |
| CuSi10-b | 2.120 | 6.385 | 2.358 | 1.298 | 0.965 |
| CuSi10-c | 2.114 | 6.340 | 2.278 | 1.682 | 1.081 |
| CuSi10-d | 2.057 | 6.203 | 2.060 | 1.982 | 0.754 |
| CuSi10-e | 2.044 | 6.172 | 2.187 | 1.777 | 0.798 |
| CuSi10-f | 2.035 | 6.701 | 2.265 | 1.445 | 1.217 |
| CuSi10-g | 2.031 | 6.729 | 2.379 | 1.346 | 1.211 |
| Cu@Si10-h | 1.977 | 6.570 | 2.321 | 1.938 | 0.780 |
| CuSi10-I | 1.976 | 6.256 | 2.179 | 1.719 | 0.830 |
| CuSi10-j | 1.858 | 6.958 | 2.753 | 0.895 | 1.392 |
| CuSi10-k | 1.812 | 6.545 | 2.516 | 0.909 | 1.171 |
| Cu@Si10-l | 1.634 | 6.759 | 2.702 | 0.262 | 0.967 |
| Cu@Si12-a | 2.899 | 6.700 | 2.889 | 0.274 | 1.490 |
| CuSi12-b | 2.529 | 6.819 | 2.879 | 0.896 | 1.248 |
| CuSi12-c | 2.496 | 6.629 | 2.716 | 0.888 | 1.063 |
| CuSi12-d | 2.361 | 6.551 | 2.726 | 0.868 | 0.911 |
| Cu@Si12-e | 2.236 | 6.777 | 2.879 | 0.377 | 1.424 |
| CuSi12-f | 2.194 | 6.316 | 2.510 | 1.171 | 0.760 |
| Cu@Si12-g | 2.053 | 6.738 | 2.850 | 0.422 | 0.914 |
| Cu@Si12-h | 1.509 | 6.996 | 3.052 | 0.477 | 1.056 |
Table 4 shows the adiabatic and vertical IPs and EAs for the most stable isomer of the series CuSin and Sin. Only the adiabatic EA shows the same trend for CuSin and their corresponding Sin clusters, as it was observed in Ref. [21]. Kishi et al. [41] studied sodium doped silicon clusters produced by laser vaporization techniques and found a parallelism between IPs of SinNa (n=4-11) and EAs of their corresponding Sin cluster. They considered that it was consistent with the fact that the structure of SinNa clusters keeps the frame of the corresponding Sin cluster unchanged, and that the electronic structure of SinNa is similar to that of the corresponding negative ion Sin−. This parallelism is not observed in Table 4 for the CuSin clusters. The reason could be that the interaction Na-Si has ionic character while the interaction Cu-Si is ionic-covalent, as it was remarked by Xiao et al. [42].
Table 4.
Calculated ionization potential and electron affinity, vertical and adiabatic for the most stable isomer of CuSin and Sin.
| Adiabatic | IP | EA | ||
|---|---|---|---|---|
| n | Sin | CuSin | Sin | CuSin |
| 6 | 7.449 | 6.967 | 2.018 | 2.407 |
| 8 | 7.084 | 6.815 | 2.226 | 2.814 |
| 10 | 7.763 | 6.075 | 2.215 | 2.724 |
| 12 | 6.976 | 6.486 | 2.257 | 3.064 |
| Vertical | IP | EA | ||
|---|---|---|---|---|
| n | Sin | CuSin | Sin | CuSin |
| 6 | 7.146 | 7.156 | 1.922 | 2.301 |
| 8 | 7.413 | 7.006 | 1.757 | 2.652 |
| 10 | 7.856 | 6.557 | 1.971 | 2.338 |
| 12 | 7.425 | 6.700 | 1.622 | 2.889 |
Polarizabilities and structure of Cu@Sin
When the number of atoms in a cluster increases there are many clusters in a narrow range of energies, so the calculation of properties like dipole polarizability, may be useful to be compared with the experimental data. [43] It is also known that the HOMO-LUMO gap correlates well with the polarizability of a system, being easier to polarize those systems with a smaller HOMO-LUMO gap. [44] However, this correlation is not verified in medium size clusters, unless that the shape of the clusters is not too different among them. [45] Pouchan et al. [45] found a correlation between polarizability of Sin (n=3-10) and the size of the energy gap between symmetry-compatible bonding and antibonding molecular orbital, that is the “allowed gap”, instead the HOMO-LUMO gap, related to the preference of the cluster to adopt oblate, prolate or compact structure. Jackson et al. [46] computed polarizabilities for compact and prolate structures of Sin clusters (n=20-28, and n=50) and found that the charge density show a metallic-like response of the clusters to an external field, and the calculated polarizabilities, are reproduced by the prediction of jellium-models for spheres and cylinders, suggesting a metallic-like character for these medium-size clusters. It is easiest to polarize a prolate cluster than a compact one. If the principal axis of the structure of one isomer are labeled a, b, and c, it is compact if the components of inertial moment verify Ia ≈ Ib ≈ Ic. Instead the structure is prolate if Ia << Ib ≈ Ic , and oblate if Ia ≈ Ib << Ic. The relation between the absolute value of the inertial moment and its largest component, |I|/Ic , discriminates compact from oblates structures. Table 5 reports atomic polarizability, the relation |I|/Ic , and bonding distance (Si-Si, Si-Cu) for each isomer in the CuSin series produced by MGAC/CPMD methodology. The atomic polarizability of the most prolated clusters, CuSi6-a and CuSi12-a, with |I|/Ic 1.352, and 1.454, respectively, is larger (34.184 au. and 34.032 au.) than the corresponding values for the less prolated isomers, CuSi8-a and CuSi10-a. The structures are considered perfectly prolated if |I|/Ic =1.414. Furthermore the cage structure Cu@Si10-h shows the lowest atomic polarizability and |I|/Ic =1.677. The present study does not show a relation between stability and HOMO-LUMO gap for the series CuSin, but there is an evident relation between the size extension of the cluster and the polarizability.
Table 5.
Calculated polarizabilities per atom (α/m), moment of total inertia I per its maximum component Ic (I/Ic) and average Si-Si bond lengths, Si-Cu bond lengths for the SinCu clusters found by the MGAC-CPMD method. Their structures are given in Figs. 1, 2 and 3. The italicized entries correspond to those found by the MGAC-CPMD method that were not previously reported in the literature [21].
| Isomer | α/m[au] | I/Ic | Bond Lenghts |
|
|---|---|---|---|---|
| Si-Si[Å] | Si-Cu[Å] | |||
| CuSi6-a | 34.184 | 1.352 | 2.492 | 2.372 |
| CuSi6-b | 35.069 | 1.430 | 2.439 | 2.323 |
| CuSi6-c | 35.122 | 1.540 | 2.475 | 2.399 |
| CuSi6-d | 36.472 | 1.375 | 2.436 | 2.254 |
| CuSi6-e | 36.261 | 1.375 | 2.448 | 2.452 |
| CuSi6-f | 36.031 | 1.406 | 2.463 | 2.341 |
| CuSi8-a | 33.554 | 1.590 | 2.474 | 2.363 |
| CuSi8-b | 33.618 | 1.452 | 2.477 | 2.398 |
| CuSi8-c | 34.041 | 1.390 | 2.504 | 2.352 |
| CuSi8-d | 34.115 | 1.415 | 2.479 | 2.341 |
| CuSi8-e | 34.208 | 1.534 | 2.472 | 2.432 |
| CuSi8-f | 34.313 | 1.391 | 2.491 | 2.429 |
| CuSi10-a | 32.735 | 1.566 | 2.493 | 2.349 |
| CuSi10-b | 32.620 | 1.561 | 2.461 | 2.338 |
| CuSi10-c | 32.698 | 1.578 | 2.447 | 2.317 |
| CuSi10-d | 32.480 | 1.537 | 2.517 | 2.365 |
| CuSi10-e | 32.784 | 1.536 | 2.513 | 2.232 |
| CuSi10-f | 32.162 | 1.541 | 2.486 | 2.308 |
| CuSi10-g | 32.085 | 1.573 | 2.507 | 2.310 |
| Cu@Si10-h | 31.280 | 1.677 | 2.580 | 2.352 |
| CuSi10-I | 32.542 | 1.403 | 2.480 | 2.333 |
| CuSi10-j | 32.393 | 1.560 | 2.492 | 2.309 |
| CuSi10-k | 32.863 | 1.571 | 2.502 | 2.268 |
| Cu@Si10-l | 33.780 | 1.568 | 2.475 | 2.440 |
| Cu@Si12-a | 34.032 | 1.4538 | 2.420 | 2.455 |
| CuSi12-b | 33.029 | 1.5145 | 2.502 | 2.457 |
| CuSi12-c | 32.689 | 1.3657 | 2.518 | 2.452 |
| CuSi12-d | 32.454 | 1.5028 | 2.514 | 2.381 |
| Cu@Si12-e | 31.910 | 1.5731 | 2.496 | 2.463 |
| CuSi12-f | 33.078 | 1.4991 | 2.476 | 2.415 |
| Cu@Si12-g | 32.641 | 1.4219 | 2.482 | 2.488 |
| Cu@Si12-h | 32.366 | 1.5826 | 2.589 | 2.552 |
Reactivity of CuSin clusters
As discussed in the introduction, structures of low reactivity can be used as building blocks for cluster-assembled materials. In order to identify these building blocks, Hiura et al. [47] noted that the growth rate decreased as n increased. In particular, grows very slowly with n ≥ 10 , and the cluster is rarely found if n > 12 , even at the long reaction time. This behavior means that clusters lose reactivity with molecules of silane (SiH4) when n reaches 12. Lightstone et. al. [48] found that the adsorption energy for sequential adsorption of nCO molecules to the (M=Mo, W) cluster are consistent with the experimental mass spectra (with n = 4 being energetically the most favorable product consistent with the preferential formation). The increment of relative abundance implies greater adsorption energy and that means that the cluster is more reactive.
Here we analyzed the reactivity of the most stable isomers of CuSi6, CuSi8, CuSi10 and CuSi12, and cage structures Cu@Si10-h, Cu@Si10-l, Cu@Si12-a and Cu@Si12-h at the B3LYP/6-31+G* level of theory: i) with an analysis of natural charges, ii) with an analysis of adsorption energy Eads = E(CuSinH+) – E(CuSin), defined as the energy absorbed by CuSin cluster by adding of a proton (H +) performed for CuSi10-a, Cu@Si10-h Cu@Si10-l, and Cu@Si12-a clusters.
Figure 7 and 8 show the natural charges evaluated at the B3LYP/6-31+G* level of theory, for the best isomers CuSi6-a, CuSi8-a, CuSi10-a, CuSi12-b, and CuSi12-c, characterized by the placement of the Cu atom in the periphery of the cluster, and the cage like structures Cu@Si10-h, Cu@Si10-l, Cu@Si12-a and Cu@Si12-h with an endohedral metal atom. The Cu atom has a positive charge, and it is surrounded by negative charges for CuSi6-a, CuSi8-a, CuSi10-a, CuSi12-b, and CuSi12-c, this is consistent with the observation that the copper atom is electron withdrawing. [21] Isomer Cu@Si10-l shows also negative charges in the periphery, but they are very small (compare with CuSi10-a in the same figure). Instead, the Cu@Si10-h cage-like isomer shows a negative charge on copper, and positive charges in the periphery. These charge distributions indicate that it is easier to adsorb a proton (H+) if it approaches surface of negative charges, than if it approaches a surface with positive charges. Because of that, the cage-like structures with an endohedral copper atom, are less reactive than those with the metal in their periphery. Cu@Si12-a and Cu@Si12-h show positive charges on copper but the negative charges in the periphery are very small, especially for the cage Cu@Si12-a. We observed in Figure 9 that the absorption energy of a peripheral proton, (H+), is 9.72 eV for CuSi10-a, 9.22 eV for Cu@Si10-l, only 8.57 eV for Cu@Si10-h, and 9.23 for Cu@Si12-a, an evidence of the lowest reactivity of these cage-like structure. Then Cu@Si10-h would work as better building block than Cu@Si10-l, and Cu@Si12-a would be an excellent building block.
Figure 7.
Natural charges for the most stable isomers of CuSi6, CuSi8 and CuSi10, and the cage like structures Cu@Si10-h and Cu@Si10-l, at the B3LYP/6-31+G* level of theory.
Figure 8.
Natural charges for some isomers of CuSi12, including cage like structures Cu@Si12-a and Cu@Si12-h, at the B3LYP/6-31+G* level of theory.
Figure 9.
Absolute value of the absorption energy of (H+) on CuSi10-a, Cu@Si10-h, Cu@Si10-l y Cu@Si12-a at the B3LYP/6-31+G* level of theory.
Conclusions
Using the MGAC/CPMD method with the GO/PBE approach to calculate the energy we have shown that the GA search does not find any endohedral cluster for CuSin clusters with n < 8, but it is able to find them for n= 10 and n=12. This has been previously postulated but the MGAC/CPMD method is able to find these structures without any a priori information on the approximate conformation of the clusters.
Acknowledgements
This work has been partially supported by computer time allocations from the NSF TeraGrid PHY080012N and CHPC allocation on the Arches cluster partially funded by NIH NCRR grant # 1S10RR017214-0. The software for this work used the GAlib genetic algorithm package, written by Matthew Wall at the Massachusetts Institute of Technology. MBF greatly acknowledge financial support from Universidad de Buenos Aires and form the Argentinean CONICET.
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