Skip to main content
. Author manuscript; available in PMC: 2011 Jul 29.
Published in final edited form as: Biochemistry. 2010 Aug 31;49(34):7351–7359. doi: 10.1021/bi100671e

Table 5.

Rate constants for select binding pocket, tertiary contact, and P1 mutants.

RNA Kd (nM) kon (M−1 min−1) koff (min−1)
Wild-type 0.011 1.0 ± 0.016 × 106 1.1 ± 0.082 × 10−5

C92Ua 15 ± 1.1 8.0 ± 0.99 × 105 1.0 ± 0.16 × 10−2
G20A 0.21 ± 0.067 9.1 ± 1.8 × 105 2.2 ± 0.077 × 10−4

C44U/G83A 190 ± 8.6 8.7 ± 1.2 × 104 2.5 ± 0.25 × 10−2

Vc2 Δ95 63 ± 13 2 × 105 b 1.3 ± 0.10 × 10−2
Vc2 Δ96 5.4 ± 0.59 2 × 106 b 1.0 ± 0.10 × 10−2
Vc2 Δ98 5.9 ± 0.79 5.0 ± 1.0 × 105 3 × 10−3 b
Vc2 Δ99 < 0.8c 1.3 ± 0.40 × 106 -
Vc2 Δ100 < 0.5c 1.2 ± 0.30 × 106 -
a

All values reported for C92U were reported previously (21).

b

Calculated from the equation Kd=koff/kon.

c

These values could not be measured using equilibrium methods and upper estimates are given.