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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 4;67(Pt 7):m834–m835. doi: 10.1107/S1600536811020125

trans-Diaqua­bis­[2,5-bis­(pyridin-2-yl)-1,3,4-thia­diazole]cobalt(II) bis­(tetra­fluoridoborate)

Fouad Bentiss a,*, Frédéric Capet b,c, Michel Lagrenée b,c, Mohamed Saadi d, Lahcen El Ammari d
PMCID: PMC3151744  PMID: 21836842

Abstract

The bidentate 1,3,4-thia­diazole ligand substituted by two 2-pyridyl rings (denoted L) has been found to produce the new monomeric title complex, [Co(C12H8N4S)2(H2O)2](BF4)2. The thia­diazole and pyridyl rings surrounding the Co atom are almost coplanar [dihedral angle = 4.35 (7)°]. The mean plane defined by these heterocyclic moieties makes a dihedral angle of 18.72 (6)° with the non-coordinated pyridyl ring. The Co2+ cation, located at a crystallographic center of symmetry, is bonded to two ligands and two water mol­ecules in a trans configuration in an octa­hedral environment. The tetra­fluorido­­borate ions can be regarded as free anions in the crystal lattice. Nevertheless, they are involved in an infinite two-dimensional network along the [010] and [101] directions of O—H⋯F hydrogen bonds.

Related literature

For background to compounds with the same ligand, see: Bentiss et al. (2002, 2004); Zheng et al. (2006). For an improved synthesis of the ligand, see: Lebrini et al. (2005).graphic file with name e-67-0m834-scheme1.jpg

Experimental

Crystal data

  • [Co(C12H8N4S)2(H2O)2](BF4)2

  • M r = 749.15

  • Monoclinic, Inline graphic

  • a = 10.8319 (2) Å

  • b = 11.0623 (2) Å

  • c = 13.2120 (3) Å

  • β = 101.114 (1)°

  • V = 1553.45 (5) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.77 mm−1

  • T = 100 K

  • 0.39 × 0.30 × 0.19 mm

Data collection

  • Bruker X8 APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.757, T max = 0.863

  • 32328 measured reflections

  • 3055 independent reflections

  • 2877 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.025

  • wR(F 2) = 0.064

  • S = 1.04

  • 3055 reflections

  • 214 parameters

  • H-atom parameters constrained

  • Δρmax = 0.54 e Å−3

  • Δρmin = −0.36 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020125/im2290sup1.cif

e-67-0m834-sup1.cif (25.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020125/im2290Isup2.hkl

e-67-0m834-Isup2.hkl (149.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1W⋯F1i 0.86 1.88 2.7014 (16) 161
O1—H2W⋯F4 0.86 1.94 2.7927 (16) 172

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

2,5-bis(2-pyridyl)-1,3,4-thiadiazole can be used to produce molecular architectures with transition metals in association with anionic co-ligands. In the resulting di- and mononuclear complexes, a variety of coordination modes have been observed, of which the dinuclear (N`N``, N2, N``) bridging, the dinuclear (N`N``, N2, N``)2 double bridging and the monoclear (N`,N`)2 coordination mode are the most common and the most important ones (Scheme 1). In the latter case, the trans-configuration is exclusively observed for octahedral complexes.

The structures of monomeric complexes of the neutral 2,5-bis(2-pyridyl)-1,3, 4-thiadiazole derivative with divalent Zn (tetrachloride and perchlorate), Co (nitrate and perchlorate), Ni (perchlorate) and Cu (nitrate and perchlorate) have been previously reported (Bentiss et al.,2002, 2004; Zheng et al. 2006). We report here the synthesis and the single-crystal structure of the new monomeric cobalt complex formed by 2,5-bis(2-pyridyl)-1,3, 4-thiadiazole with tetrafluoroborates as counter ions.

The complex cation shows an almost regular octahedral environment of cobalt cation which is located at a crystallographic center of symmetry. Cobalt therefore is linked to two ligands and two water molecules as shown in Fig.1. As a matter of fact, the cobalt coordination sphere is achieved by interaction with the nitrogen atom of a single pyridyl ring and with the adjacent nitrogen of the azine group with Co—N distances in the range of 2.082 (2)— 2.173 (2) Å. Moreover, the water molecules are found in axial positions at distances of Co—O 2.128 (2) Å and all N—Co—O angles being close to 90 °.

The dihedral angle between thiadiazole and the coordinating pyridyl ring is 4.35 (7)°. The mean plane defined by the two preceding heterocyclic moieties forms a dihedral angle with the non-coordinating pyridine ring (N4-C8-C9-C10-C11-C12) of 18.72 (6)°. The counter ion, BF4-, is involved in an infinite two-dimensional network of hydrogen bonds (Table 1).

Experimental

2,5-Bis(2-pyridyl)-1,3,4-thiadiazole ligand (noted L) was synthesized as described previously by Lebrini et al., 2005. Co(BF4)2 × 6 H2O (1.5 mmol, 0.51 g) in 8 ml of water was added to (0.42 mmol, 0.1 g) of L (bptd ligand) dissolved in 8 ml of ethanol. The solution was filtered and after 24 h, the orange compound crystallized at room temperature. Crystals were washed with water and dried under vacuum. Yield: 54%. Anal. Calc. for C12H10BCo0.5F4N4OS: C, 38.44; H, 2.67; N, 14.95; S, 8.56; F, 20.29%. Found: C, 38.56; H, 2.72; N, 14.88; S, 8.51; F, 20.36%.

Refinement

H atoms were located in a difference map and treated as riding with C—H = 0.95 Å for the aromatic CH, with Uiso(H) = 1.2 Ueq (aromatic). The O-bound H atom is initially located in a difference map and refined with O—H distance restraints of 0.86 (1). In a the last cycle there is refined in the riding model approximation with Uiso(H) set to 1.2Ueq(O).

Figures

Fig. 1.

Fig. 1.

Molecular structure showing the cationic cobalt complex and the counter ions. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. Hydrogen bonds are depicted as dashed lines.

Crystal data

[Co(C12H8N4S)2(H2O)2](BF4)2 F(000) = 754
Mr = 749.15 Dx = 1.602 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 3055 reflections
a = 10.8319 (2) Å θ = 2.5–26.0°
b = 11.0623 (2) Å µ = 0.77 mm1
c = 13.2120 (3) Å T = 100 K
β = 101.114 (1)° Prism, pink
V = 1553.45 (5) Å3 0.39 × 0.30 × 0.19 mm
Z = 2

Data collection

Bruker X8 APEXII diffractometer 3055 independent reflections
Radiation source: fine-focus sealed tube 2877 reflections with I > 2σ(I)
graphite Rint = 0.023
φ and ω scans θmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −13→13
Tmin = 0.757, Tmax = 0.863 k = −13→13
32328 measured reflections l = −16→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.028P)2 + 1.2095P] where P = (Fo2 + 2Fc2)/3
3055 reflections (Δ/σ)max = 0.001
214 parameters Δρmax = 0.54 e Å3
0 restraints Δρmin = −0.36 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
B1 0.57309 (16) 0.64485 (16) 0.25732 (14) 0.0216 (3)
F1 0.67597 (12) 0.59356 (14) 0.32121 (9) 0.0571 (4)
F2 0.58207 (9) 0.62506 (10) 0.15136 (7) 0.0332 (2)
F3 0.46504 (11) 0.59451 (11) 0.27939 (11) 0.0506 (3)
F4 0.57202 (12) 0.76967 (9) 0.27725 (9) 0.0446 (3)
C1 0.40758 (13) 0.75359 (13) −0.02371 (11) 0.0182 (3)
C2 0.47872 (13) 1.25525 (13) 0.07062 (11) 0.0183 (3)
C3 0.43647 (14) 1.36225 (14) 0.10807 (12) 0.0217 (3)
H3 0.4818 1.4354 0.1061 0.026*
C4 0.32601 (15) 1.36036 (14) 0.14872 (12) 0.0247 (3)
H4 0.2948 1.4323 0.1740 0.030*
C5 0.26323 (15) 1.25161 (14) 0.15134 (12) 0.0245 (3)
H5 0.1882 1.2476 0.1784 0.029*
C6 0.31236 (14) 1.14767 (14) 0.11331 (12) 0.0224 (3)
H6 0.2695 1.0732 0.1161 0.027*
C7 0.22011 (13) 0.74718 (13) 0.04650 (11) 0.0196 (3)
C8 0.10139 (14) 0.71559 (14) 0.07978 (11) 0.0206 (3)
C9 0.01592 (15) 0.80486 (16) 0.09485 (13) 0.0278 (3)
H9 0.0326 0.8880 0.0854 0.033*
C10 −0.09485 (16) 0.76752 (18) 0.12427 (14) 0.0327 (4)
H10 −0.1560 0.8253 0.1349 0.039*
C11 −0.11496 (16) 0.64530 (17) 0.13791 (13) 0.0317 (4)
H11 −0.1899 0.6180 0.1578 0.038*
C12 −0.02334 (16) 0.56355 (16) 0.12188 (13) 0.0295 (4)
H12 −0.0372 0.4800 0.1322 0.035*
Co1 0.5000 1.0000 0.0000 0.01779 (9)
N1 0.41821 (12) 1.14819 (11) 0.07273 (10) 0.0196 (3)
N2 0.37922 (11) 0.85730 (11) 0.01641 (10) 0.0195 (3)
N3 0.27082 (12) 0.85445 (11) 0.05733 (10) 0.0210 (3)
N4 0.08401 (12) 0.59657 (12) 0.09253 (10) 0.0243 (3)
O1 0.61489 (10) 0.95481 (10) 0.14452 (9) 0.0267 (2)
H1W 0.6833 0.9925 0.1697 0.032*
H2W 0.6079 0.9000 0.1892 0.032*
S1 0.30230 (3) 0.64074 (3) −0.01342 (3) 0.01990 (10)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
B1 0.0179 (8) 0.0198 (8) 0.0261 (9) 0.0022 (6) 0.0013 (7) 0.0020 (7)
F1 0.0467 (7) 0.0832 (10) 0.0362 (6) 0.0401 (7) −0.0049 (5) 0.0013 (6)
F2 0.0322 (5) 0.0381 (6) 0.0277 (5) −0.0042 (4) 0.0018 (4) −0.0023 (4)
F3 0.0409 (6) 0.0405 (7) 0.0801 (9) −0.0129 (5) 0.0361 (6) −0.0168 (6)
F4 0.0673 (8) 0.0217 (5) 0.0455 (6) −0.0078 (5) 0.0126 (6) −0.0022 (5)
C1 0.0168 (7) 0.0148 (7) 0.0213 (7) −0.0023 (5) −0.0009 (5) 0.0027 (5)
C2 0.0170 (7) 0.0176 (7) 0.0185 (7) −0.0009 (5) −0.0012 (5) 0.0018 (5)
C3 0.0230 (8) 0.0164 (7) 0.0250 (8) −0.0022 (6) 0.0024 (6) 0.0006 (6)
C4 0.0273 (8) 0.0204 (8) 0.0270 (8) 0.0026 (6) 0.0070 (6) −0.0017 (6)
C5 0.0224 (7) 0.0252 (8) 0.0268 (8) −0.0006 (6) 0.0074 (6) 0.0007 (6)
C6 0.0213 (7) 0.0198 (7) 0.0266 (8) −0.0046 (6) 0.0061 (6) 0.0006 (6)
C7 0.0178 (7) 0.0185 (7) 0.0212 (7) −0.0003 (6) 0.0006 (6) 0.0010 (6)
C8 0.0177 (7) 0.0232 (8) 0.0201 (7) −0.0033 (6) 0.0018 (5) −0.0013 (6)
C9 0.0220 (8) 0.0259 (8) 0.0348 (9) 0.0002 (6) 0.0032 (7) −0.0001 (7)
C10 0.0219 (8) 0.0428 (10) 0.0341 (9) 0.0051 (7) 0.0074 (7) −0.0038 (8)
C11 0.0226 (8) 0.0463 (11) 0.0284 (9) −0.0080 (7) 0.0103 (7) −0.0017 (8)
C12 0.0305 (9) 0.0300 (9) 0.0302 (8) −0.0106 (7) 0.0114 (7) −0.0016 (7)
Co1 0.01571 (14) 0.01254 (14) 0.02481 (16) −0.00254 (10) 0.00315 (11) −0.00077 (10)
N1 0.0184 (6) 0.0159 (6) 0.0235 (6) −0.0018 (5) 0.0017 (5) 0.0012 (5)
N2 0.0166 (6) 0.0164 (6) 0.0253 (6) −0.0018 (5) 0.0033 (5) −0.0002 (5)
N3 0.0173 (6) 0.0194 (6) 0.0264 (7) −0.0028 (5) 0.0043 (5) 0.0004 (5)
N4 0.0239 (7) 0.0229 (7) 0.0275 (7) −0.0059 (5) 0.0083 (5) −0.0016 (5)
O1 0.0244 (6) 0.0220 (6) 0.0306 (6) −0.0050 (4) −0.0027 (5) 0.0039 (5)
S1 0.01719 (18) 0.01395 (17) 0.0284 (2) −0.00295 (13) 0.00399 (14) 0.00011 (14)

Geometric parameters (Å, °)

B1—F3 1.377 (2) C7—S1 1.7543 (15)
B1—F1 1.383 (2) C8—N4 1.345 (2)
B1—F4 1.406 (2) C8—C9 1.394 (2)
B1—F2 1.439 (2) C9—C10 1.393 (2)
C1—N2 1.3245 (19) C9—H9 0.9500
C1—C2i 1.485 (2) C10—C11 1.387 (3)
C1—S1 1.7138 (14) C10—H10 0.9500
C2—N1 1.3565 (19) C11—C12 1.389 (3)
C2—C3 1.394 (2) C11—H11 0.9500
C2—C1i 1.485 (2) C12—N4 1.345 (2)
C3—C4 1.403 (2) C12—H12 0.9500
C3—H3 0.9500 Co1—N2 2.0880 (12)
C4—C5 1.386 (2) Co1—N2i 2.0880 (12)
C4—H4 0.9500 Co1—O1i 2.1280 (11)
C5—C6 1.400 (2) Co1—O1 2.1280 (11)
C5—H5 0.9500 Co1—N1i 2.1734 (13)
C6—N1 1.356 (2) Co1—N1 2.1734 (13)
C6—H6 0.9500 N2—N3 1.3845 (17)
C7—N3 1.3039 (19) O1—H1W 0.8597
C7—C8 1.479 (2) O1—H2W 0.8597
F3—B1—F1 108.81 (15) C9—C10—H10 120.3
F3—B1—F4 108.63 (14) C10—C11—C12 118.70 (15)
F1—B1—F4 108.86 (14) C10—C11—H11 120.6
F3—B1—F2 111.36 (14) C12—C11—H11 120.6
F1—B1—F2 109.49 (13) N4—C12—C11 123.37 (16)
F4—B1—F2 109.65 (13) N4—C12—H12 118.3
N2—C1—C2i 119.94 (13) C11—C12—H12 118.3
N2—C1—S1 112.95 (11) N2—Co1—N2i 180.0
C2i—C1—S1 127.10 (11) N2—Co1—O1i 90.06 (5)
N1—C2—C3 122.76 (13) N2i—Co1—O1i 89.94 (5)
N1—C2—C1i 113.20 (13) N2—Co1—O1 89.94 (5)
C3—C2—C1i 124.03 (13) N2i—Co1—O1 90.06 (5)
C2—C3—C4 119.07 (14) O1i—Co1—O1 180.0
C2—C3—H3 120.5 N2—Co1—N1i 78.03 (5)
C4—C3—H3 120.5 N2i—Co1—N1i 101.97 (5)
C5—C4—C3 118.77 (14) O1i—Co1—N1i 89.90 (5)
C5—C4—H4 120.6 O1—Co1—N1i 90.10 (5)
C3—C4—H4 120.6 N2—Co1—N1 101.97 (5)
C4—C5—C6 118.80 (14) N2i—Co1—N1 78.03 (5)
C4—C5—H5 120.6 O1i—Co1—N1 90.10 (5)
C6—C5—H5 120.6 O1—Co1—N1 89.90 (5)
N1—C6—C5 123.17 (14) N1i—Co1—N1 180.0
N1—C6—H6 118.4 C6—N1—C2 117.42 (13)
C5—C6—H6 118.4 C6—N1—Co1 128.27 (10)
N3—C7—C8 123.68 (14) C2—N1—Co1 114.19 (10)
N3—C7—S1 114.88 (11) C1—N2—N3 114.59 (12)
C8—C7—S1 121.44 (11) C1—N2—Co1 114.52 (10)
N4—C8—C9 124.24 (14) N3—N2—Co1 130.79 (9)
N4—C8—C7 114.78 (13) C7—N3—N2 110.42 (12)
C9—C8—C7 120.97 (14) C8—N4—C12 116.84 (14)
C10—C9—C8 117.47 (16) Co1—O1—H1W 123.1
C10—C9—H9 121.3 Co1—O1—H2W 131.9
C8—C9—H9 121.3 H1W—O1—H2W 105.0
C11—C10—C9 119.38 (16) C1—S1—C7 87.15 (7)
C11—C10—H10 120.3
N1—C2—C3—C4 −0.8 (2) O1—Co1—N1—C2 91.44 (10)
C1i—C2—C3—C4 178.56 (14) N1i—Co1—N1—C2 7.1 (4)
C2—C3—C4—C5 0.7 (2) C2i—C1—N2—N3 179.69 (12)
C3—C4—C5—C6 0.0 (2) S1—C1—N2—N3 −0.59 (16)
C4—C5—C6—N1 −0.7 (2) C2i—C1—N2—Co1 2.91 (17)
N3—C7—C8—N4 −160.18 (14) S1—C1—N2—Co1 −177.38 (6)
S1—C7—C8—N4 20.91 (18) N2i—Co1—N2—C1 −137 (5)
N3—C7—C8—C9 20.5 (2) O1i—Co1—N2—C1 89.03 (11)
S1—C7—C8—C9 −158.44 (12) O1—Co1—N2—C1 −90.97 (11)
N4—C8—C9—C10 −0.5 (2) N1i—Co1—N2—C1 −0.85 (10)
C7—C8—C9—C10 178.78 (14) N1—Co1—N2—C1 179.15 (10)
C8—C9—C10—C11 0.5 (2) N2i—Co1—N2—N3 47 (5)
C9—C10—C11—C12 0.1 (3) O1i—Co1—N2—N3 −87.11 (12)
C10—C11—C12—N4 −0.8 (3) O1—Co1—N2—N3 92.89 (12)
C5—C6—N1—C2 0.7 (2) N1i—Co1—N2—N3 −176.99 (13)
C5—C6—N1—Co1 −174.93 (11) N1—Co1—N2—N3 3.01 (13)
C3—C2—N1—C6 0.0 (2) C8—C7—N3—N2 −178.29 (13)
C1i—C2—N1—C6 −179.34 (12) S1—C7—N3—N2 0.69 (16)
C3—C2—N1—Co1 176.30 (11) C1—N2—N3—C7 −0.07 (18)
C1i—C2—N1—Co1 −3.08 (15) Co1—N2—N3—C7 176.07 (10)
N2—Co1—N1—C6 −2.87 (14) C9—C8—N4—C12 −0.1 (2)
N2i—Co1—N1—C6 177.13 (14) C7—C8—N4—C12 −179.41 (14)
O1i—Co1—N1—C6 87.21 (13) C11—C12—N4—C8 0.7 (2)
O1—Co1—N1—C6 −92.79 (13) N2—C1—S1—C7 0.78 (11)
N1i—Co1—N1—C6 −177.1 (5) C2i—C1—S1—C7 −179.52 (13)
N2—Co1—N1—C2 −178.64 (10) N3—C7—S1—C1 −0.86 (12)
N2i—Co1—N1—C2 1.36 (10) C8—C7—S1—C1 178.15 (13)
O1i—Co1—N1—C2 −88.56 (10)

Symmetry codes: (i) −x+1, −y+2, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1W···F1ii 0.86 1.88 2.7014 (16) 161
O1—H2W···F4 0.86 1.94 2.7927 (16) 172

Symmetry codes: (ii) −x+3/2, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IM2290).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020125/im2290sup1.cif

e-67-0m834-sup1.cif (25.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020125/im2290Isup2.hkl

e-67-0m834-Isup2.hkl (149.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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