Abstract
In the title compound, [Zn(NCS)2(C10H15N3)], the Zn atom is five-coordinated by the three N-donor atoms of the Schiff base ligand and by two N atoms from two thiocyanate anions, forming a distorted ZnN5 trigonal–bipyramidal coordination geometry for the metal ion. The side chain of the ligand is disordered over two sets of sites in a 0.655 (12):0.345 (12) ratio. In the crystal, molecules are linked by N—H⋯S hydrogen bonds, generating [100] chains.
Related literature
For the biological activity of Schiff base compounds, see: Panneerselvam et al. (2005 ▶); Shi et al. (2007 ▶); Singh et al. (2006 ▶, 2007 ▶); Zhong et al. (2006 ▶). For the Schiff base complexes we reported previously, see: Li & Qiu (2008a
▶,b
▶).
Experimental
Crystal data
[Zn(NCS)2(C10H15N3)]
M r = 358.78
Monoclinic,
a = 7.6674 (3) Å
b = 14.8062 (5) Å
c = 14.3766 (6) Å
β = 101.853 (2)°
V = 1597.30 (11) Å3
Z = 4
Mo Kα radiation
μ = 1.80 mm−1
T = 298 K
0.20 × 0.20 × 0.18 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.715, T max = 0.738
9004 measured reflections
3352 independent reflections
2095 reflections with I > 2σ(I)
R int = 0.029
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.105
S = 1.02
3352 reflections
201 parameters
12 restraints
H-atom parameters constrained
Δρmax = 0.46 e Å−3
Δρmin = −0.46 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019945/hb5892sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019945/hb5892Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Zn1—N5 | 1.974 (4) |
| Zn1—N4 | 1.986 (4) |
| Zn1—N2 | 2.088 (3) |
| Zn1—N3 | 2.163 (4) |
| Zn1—N1 | 2.195 (3) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3A⋯S1i | 0.91 | 2.66 | 3.551 (5) | 165 |
Symmetry code: (i)
.
Acknowledgments
We thank Minjiang University for financial support.
supplementary crystallographic information
Comment
Schiff base compounds have been reported to have excellent biological activity (Shi et al., 2007; Panneerselvam et al., 2005). The metal complexes derived from the Schiff bases also have excellent biological activity (Singh et al., 2006, 2007; Zhong et al., 2006). As a continuation of our work on Schiff base complexes (Li & Qiu, 2008a,b), we report herein the crystal structure of the title zinc complex, (I).
In the title mononuclear zinc(II) complex, the Zn atom is five-coordinated by the three donor atoms (N1, N2, and N3) of the Schiff baes ligand, and two N atoms from two thiocyanate ligands, forming a slightly distorted trigonal-bipyramidal geometry (Fig. 1). The coordinate bond values (Table 1) are within normal ranges.
Experimental
The title compound was obtained by the reaction of equimolar quantities (0.1 mmol each) of 2-acetylpyridine, N-methylethane-1,2-diamine, sodium thiocyanate, and zinc acetate in ethanol. Colorless blocks of (I) were obtained by the slow evaporation of the filtrate in air.
Refinement
H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.97Å and with Uiso(H) = 1.2 (1.5 for methyl groups) times Ueq(C).
The amino H atoms were located in a difference map and refined with N—H distance restrained to 0.90 (1) Å. The remaining H atoms were positioned geometrically (C—H = 0.93–0.97 Å, N—H = 0.91 Å) and refined using a riding model, with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(methyl C). The C9—N3—C10 moiety is disordered over two sites, with occupancies of 0.655 (3) and 0.345 (3).
Figures
Fig. 1.
The molecular structure of the title compound, showing 30% probability displacement ellipsoids. Only the major component of the disordered group is shown.
Crystal data
| [Zn(NCS)2(C10H15N3)] | F(000) = 736 |
| Mr = 358.78 | Dx = 1.492 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2372 reflections |
| a = 7.6674 (3) Å | θ = 2.6–25.1° |
| b = 14.8062 (5) Å | µ = 1.80 mm−1 |
| c = 14.3766 (6) Å | T = 298 K |
| β = 101.853 (2)° | Block, colorless |
| V = 1597.30 (11) Å3 | 0.20 × 0.20 × 0.18 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 3352 independent reflections |
| Radiation source: fine-focus sealed tube | 2095 reflections with I > 2σ(I) |
| graphite | Rint = 0.029 |
| ω scans | θmax = 26.7°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −9→9 |
| Tmin = 0.715, Tmax = 0.738 | k = −17→18 |
| 9004 measured reflections | l = −18→11 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.105 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0323P)2 + 1.952P] where P = (Fo2 + 2Fc2)/3 |
| 3352 reflections | (Δ/σ)max = 0.001 |
| 201 parameters | Δρmax = 0.46 e Å−3 |
| 12 restraints | Δρmin = −0.46 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| Zn1 | 0.72087 (6) | −0.07353 (3) | 0.71636 (3) | 0.05504 (17) | |
| S1 | 1.28221 (17) | −0.15205 (10) | 0.89256 (10) | 0.0835 (4) | |
| S2 | 0.3366 (2) | −0.32564 (11) | 0.66375 (10) | 0.1063 (6) | |
| N1 | 0.7424 (4) | −0.0555 (2) | 0.5676 (2) | 0.0524 (8) | |
| N2 | 0.6777 (4) | 0.0641 (2) | 0.6890 (2) | 0.0559 (8) | |
| N4 | 0.9697 (5) | −0.1140 (3) | 0.7651 (3) | 0.0760 (11) | |
| N5 | 0.5583 (5) | −0.1782 (2) | 0.6923 (2) | 0.0684 (10) | |
| C1 | 0.7390 (5) | 0.0309 (3) | 0.5392 (3) | 0.0515 (9) | |
| C2 | 0.7683 (5) | 0.0539 (3) | 0.4504 (3) | 0.0628 (11) | |
| H2 | 0.7670 | 0.1142 | 0.4319 | 0.075* | |
| C3 | 0.7993 (6) | −0.0131 (4) | 0.3901 (3) | 0.0708 (13) | |
| H3 | 0.8193 | 0.0015 | 0.3303 | 0.085* | |
| C4 | 0.8009 (6) | −0.1007 (4) | 0.4174 (3) | 0.0706 (13) | |
| H4 | 0.8207 | −0.1469 | 0.3770 | 0.085* | |
| C5 | 0.7719 (6) | −0.1192 (3) | 0.5074 (3) | 0.0629 (11) | |
| H5 | 0.7731 | −0.1792 | 0.5268 | 0.075* | |
| C6 | 0.7014 (5) | 0.0970 (3) | 0.6107 (3) | 0.0577 (10) | |
| C7 | 0.6971 (7) | 0.1958 (3) | 0.5876 (4) | 0.0877 (15) | |
| H7A | 0.6442 | 0.2284 | 0.6325 | 0.132* | |
| H7B | 0.6279 | 0.2052 | 0.5247 | 0.132* | |
| H7C | 0.8164 | 0.2172 | 0.5907 | 0.132* | |
| C11 | 1.1008 (6) | −0.1300 (3) | 0.8180 (3) | 0.0573 (10) | |
| C12 | 0.4653 (6) | −0.2395 (3) | 0.6815 (3) | 0.0586 (10) | |
| C8 | 0.6362 (7) | 0.1164 (3) | 0.7662 (3) | 0.0810 (14) | 0.655 (12) |
| H8A | 0.5502 | 0.1631 | 0.7417 | 0.097* | 0.655 (12) |
| H8B | 0.7431 | 0.1451 | 0.8016 | 0.097* | 0.655 (12) |
| C9 | 0.5577 (12) | 0.0508 (5) | 0.8318 (5) | 0.074 (3) | 0.655 (12) |
| H9A | 0.5582 | 0.0803 | 0.8921 | 0.089* | 0.655 (12) |
| H9B | 0.4349 | 0.0371 | 0.8026 | 0.089* | 0.655 (12) |
| C10 | 0.7978 (14) | −0.0366 (8) | 0.9293 (6) | 0.089 (3) | 0.655 (12) |
| H10A | 0.7586 | −0.0160 | 0.9849 | 0.133* | 0.655 (12) |
| H10B | 0.8964 | −0.0004 | 0.9196 | 0.133* | 0.655 (12) |
| H10C | 0.8346 | −0.0986 | 0.9377 | 0.133* | 0.655 (12) |
| N3 | 0.6540 (6) | −0.0290 (3) | 0.8480 (2) | 0.0814 (12) | 0.655 (12) |
| H3A | 0.5729 | −0.0703 | 0.8591 | 0.098* | 0.655 (12) |
| C8' | 0.6362 (7) | 0.1164 (3) | 0.7662 (3) | 0.0810 (14) | 0.345 (12) |
| H8'A | 0.5082 | 0.1233 | 0.7582 | 0.097* | 0.345 (12) |
| H8'B | 0.6893 | 0.1760 | 0.7673 | 0.097* | 0.345 (12) |
| C9' | 0.709 (2) | 0.0678 (7) | 0.8562 (7) | 0.097 (7) | 0.345 (12) |
| H9'A | 0.6658 | 0.0959 | 0.9081 | 0.116* | 0.345 (12) |
| H9'B | 0.8382 | 0.0719 | 0.8702 | 0.116* | 0.345 (12) |
| C10' | 0.723 (2) | −0.0647 (13) | 0.9393 (8) | 0.066 (5) | 0.345 (12) |
| H10D | 0.6699 | −0.0338 | 0.9854 | 0.099* | 0.345 (12) |
| H10E | 0.8497 | −0.0565 | 0.9546 | 0.099* | 0.345 (12) |
| H10F | 0.6955 | −0.1279 | 0.9400 | 0.099* | 0.345 (12) |
| N3' | 0.6540 (6) | −0.0290 (3) | 0.8480 (2) | 0.0814 (12) | 0.345 (12) |
| H3'A | 0.5331 | −0.0302 | 0.8394 | 0.098* | 0.345 (12) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0644 (3) | 0.0492 (3) | 0.0518 (3) | 0.0000 (2) | 0.0128 (2) | 0.0037 (2) |
| S1 | 0.0678 (8) | 0.0948 (10) | 0.0845 (9) | 0.0061 (7) | 0.0077 (6) | −0.0070 (7) |
| S2 | 0.1434 (14) | 0.0975 (11) | 0.0869 (9) | −0.0621 (10) | 0.0447 (9) | −0.0190 (8) |
| N1 | 0.062 (2) | 0.0456 (19) | 0.0502 (18) | −0.0062 (15) | 0.0126 (15) | −0.0006 (15) |
| N2 | 0.061 (2) | 0.0461 (18) | 0.061 (2) | 0.0029 (16) | 0.0128 (16) | −0.0033 (16) |
| N4 | 0.074 (3) | 0.082 (3) | 0.073 (3) | 0.008 (2) | 0.018 (2) | 0.021 (2) |
| N5 | 0.082 (3) | 0.055 (2) | 0.069 (2) | −0.007 (2) | 0.017 (2) | 0.0074 (18) |
| C1 | 0.042 (2) | 0.057 (2) | 0.053 (2) | −0.0039 (18) | 0.0023 (17) | 0.0080 (19) |
| C2 | 0.055 (3) | 0.071 (3) | 0.059 (3) | −0.008 (2) | 0.003 (2) | 0.020 (2) |
| C3 | 0.064 (3) | 0.100 (4) | 0.048 (2) | −0.015 (3) | 0.010 (2) | 0.009 (3) |
| C4 | 0.068 (3) | 0.092 (4) | 0.054 (3) | −0.010 (3) | 0.018 (2) | −0.012 (2) |
| C5 | 0.072 (3) | 0.056 (3) | 0.064 (3) | −0.005 (2) | 0.022 (2) | −0.002 (2) |
| C6 | 0.054 (2) | 0.044 (2) | 0.070 (3) | −0.0030 (18) | 0.002 (2) | 0.004 (2) |
| C7 | 0.114 (4) | 0.048 (3) | 0.099 (4) | −0.001 (3) | 0.015 (3) | 0.008 (3) |
| C11 | 0.065 (3) | 0.051 (2) | 0.060 (3) | −0.005 (2) | 0.024 (2) | 0.003 (2) |
| C12 | 0.075 (3) | 0.059 (3) | 0.045 (2) | −0.002 (2) | 0.022 (2) | 0.007 (2) |
| C8 | 0.097 (4) | 0.060 (3) | 0.089 (4) | −0.004 (3) | 0.025 (3) | −0.019 (3) |
| C9 | 0.081 (6) | 0.080 (6) | 0.062 (4) | 0.033 (4) | 0.018 (4) | −0.005 (4) |
| C10 | 0.111 (7) | 0.092 (7) | 0.059 (5) | 0.030 (5) | 0.010 (5) | −0.003 (4) |
| N3 | 0.092 (3) | 0.097 (3) | 0.057 (2) | −0.012 (3) | 0.020 (2) | −0.009 (2) |
| C8' | 0.097 (4) | 0.060 (3) | 0.089 (4) | −0.004 (3) | 0.025 (3) | −0.019 (3) |
| C9' | 0.096 (14) | 0.151 (18) | 0.044 (8) | −0.025 (12) | 0.015 (8) | −0.013 (9) |
| C10' | 0.090 (12) | 0.066 (10) | 0.046 (7) | 0.005 (9) | 0.025 (8) | 0.016 (7) |
| N3' | 0.092 (3) | 0.097 (3) | 0.057 (2) | −0.012 (3) | 0.020 (2) | −0.009 (2) |
Geometric parameters (Å, °)
| Zn1—N5 | 1.974 (4) | C5—H5 | 0.9300 |
| Zn1—N4 | 1.986 (4) | C6—C7 | 1.499 (6) |
| Zn1—N2 | 2.088 (3) | C7—H7A | 0.9600 |
| Zn1—N3 | 2.163 (4) | C7—H7B | 0.9600 |
| Zn1—N1 | 2.195 (3) | C7—H7C | 0.9600 |
| S1—C11 | 1.605 (5) | C8—C9 | 1.559 (7) |
| S2—C12 | 1.601 (5) | C8—H8A | 0.9700 |
| N1—C5 | 1.330 (5) | C8—H8B | 0.9700 |
| N1—C1 | 1.342 (5) | C9—N3 | 1.388 (6) |
| N2—C6 | 1.273 (5) | C9—H9A | 0.9700 |
| N2—C8 | 1.441 (5) | C9—H9B | 0.9700 |
| N4—C11 | 1.154 (5) | C10—N3 | 1.437 (7) |
| N5—C12 | 1.145 (5) | C10—H10A | 0.9600 |
| C1—C2 | 1.383 (5) | C10—H10B | 0.9600 |
| C1—C6 | 1.490 (6) | C10—H10C | 0.9600 |
| C2—C3 | 1.371 (6) | N3—H3A | 0.9100 |
| C2—H2 | 0.9300 | C9'—H9'A | 0.9700 |
| C3—C4 | 1.354 (6) | C9'—H9'B | 0.9700 |
| C3—H3 | 0.9300 | C10'—H10D | 0.9600 |
| C4—C5 | 1.385 (6) | C10'—H10E | 0.9600 |
| C4—H4 | 0.9300 | C10'—H10F | 0.9600 |
| N5—Zn1—N4 | 110.56 (16) | C6—C7—H7A | 109.5 |
| N5—Zn1—N2 | 131.51 (14) | C6—C7—H7B | 109.5 |
| N4—Zn1—N2 | 117.70 (15) | H7A—C7—H7B | 109.5 |
| N5—Zn1—N3 | 97.92 (16) | C6—C7—H7C | 109.5 |
| N4—Zn1—N3 | 99.59 (16) | H7A—C7—H7C | 109.5 |
| N2—Zn1—N3 | 79.09 (15) | H7B—C7—H7C | 109.5 |
| N5—Zn1—N1 | 95.51 (13) | N4—C11—S1 | 179.4 (4) |
| N4—Zn1—N1 | 96.97 (14) | N5—C12—S2 | 178.5 (4) |
| N2—Zn1—N1 | 74.85 (12) | N2—C8—C9 | 107.8 (4) |
| N3—Zn1—N1 | 153.44 (15) | N2—C8—H8A | 110.2 |
| C5—N1—C1 | 118.3 (3) | C9—C8—H8A | 110.2 |
| C5—N1—Zn1 | 127.2 (3) | N2—C8—H8B | 110.2 |
| C1—N1—Zn1 | 114.3 (3) | C9—C8—H8B | 110.2 |
| C6—N2—C8 | 124.6 (4) | H8A—C8—H8B | 108.5 |
| C6—N2—Zn1 | 119.6 (3) | N3—C9—C8 | 111.9 (5) |
| C8—N2—Zn1 | 115.5 (3) | N3—C9—H9A | 109.2 |
| C11—N4—Zn1 | 159.8 (4) | C8—C9—H9A | 109.2 |
| C12—N5—Zn1 | 177.7 (4) | N3—C9—H9B | 109.2 |
| N1—C1—C2 | 121.3 (4) | C8—C9—H9B | 109.2 |
| N1—C1—C6 | 114.3 (3) | H9A—C9—H9B | 107.9 |
| C2—C1—C6 | 124.4 (4) | N3—C10—H10A | 109.5 |
| C3—C2—C1 | 119.2 (4) | N3—C10—H10B | 109.5 |
| C3—C2—H2 | 120.4 | H10A—C10—H10B | 109.5 |
| C1—C2—H2 | 120.4 | N3—C10—H10C | 109.5 |
| C4—C3—C2 | 120.2 (4) | H10A—C10—H10C | 109.5 |
| C4—C3—H3 | 119.9 | H10B—C10—H10C | 109.5 |
| C2—C3—H3 | 119.9 | C9—N3—C10 | 119.7 (7) |
| C3—C4—C5 | 117.8 (4) | C9—N3—Zn1 | 109.1 (3) |
| C3—C4—H4 | 121.1 | C10—N3—Zn1 | 114.1 (5) |
| C5—C4—H4 | 121.1 | C9—N3—H3A | 104.0 |
| N1—C5—C4 | 123.3 (4) | C10—N3—H3A | 104.0 |
| N1—C5—H5 | 118.4 | Zn1—N3—H3A | 104.0 |
| C4—C5—H5 | 118.4 | H9'A—C9'—H9'B | 108.1 |
| N2—C6—C1 | 116.2 (3) | H10D—C10'—H10E | 109.5 |
| N2—C6—C7 | 124.7 (4) | H10D—C10'—H10F | 109.5 |
| C1—C6—C7 | 119.1 (4) | H10E—C10'—H10F | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3A···S1i | 0.91 | 2.66 | 3.551 (5) | 165 |
Symmetry codes: (i) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5892).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019945/hb5892sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019945/hb5892Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

