Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 18;67(Pt 7):m923. doi: 10.1107/S1600536811022240

(Dimethyl sulfoxide-κO)trimeth­yl(2-methyl-3,5-dinitro­benzoato-κO 1)tin(IV)

Muhammed Danish a,*, Sabiha Ghafoor b, Nazir Ahmad b, Wojciech Starosta c, Janusz Leciejewicz c
PMCID: PMC3151753  PMID: 21836907

Abstract

In the title mononuclear complex, [Sn(CH3)3(C7H5N2O6)(C2H6OS)], the SnIV ion is coordinated by three methyl groups in the equatorial plane, and by an O atom from a 2-methyl-3,5-dinitrobenzoate ligand and a dimethyl sulfoxide ligand in the axial sites, to form a slightly distorted trigonal–bipyramidal environment. The O atoms of one of the nitro groups are disordered over two sets of sites, with refined occupancies of 0.55 (4) and 0.45 (4). The closest inter­molecular inter­action is a weak C—H⋯O hydrogen bond.

Related literature

For the applications of trimethytin complexes, see: Gielen et al. (2005); Gielen (2002); Hameed et al. (2009); Ashhad et al. (2005). For the structure of a trimethyl­tin complex with a 2-methyl­benzene-3-carboxyl­ate ligand, see: Danish et al. (2010). For the structure of a triphenyl­tin complex with 2-methyl-3,5-dinitro­benzene carboxyl­ate and methanol ligands, see: Danish et al. (2011).graphic file with name e-67-0m923-scheme1.jpg

Experimental

Crystal data

  • [Sn(CH3)3(C7H5N2O6)(C2H6OS)]

  • M r = 467.06

  • Monoclinic, Inline graphic

  • a = 9.6180 (19) Å

  • b = 12.971 (3) Å

  • c = 15.612 (3) Å

  • β = 102.98 (3)°

  • V = 1897.9 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.49 mm−1

  • T = 293 K

  • 0.42 × 0.24 × 0.08 mm

Data collection

  • Kuma KM-4 four-circle diffractometer

  • Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) T min = 0.753, T max = 0.890

  • 4755 measured reflections

  • 4500 independent reflections

  • 2464 reflections with I > 2σ(I)

  • R int = 0.030

  • 3 standard reflections every 200 reflections intensity decay: 0.2%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.144

  • S = 1.01

  • 4500 reflections

  • 242 parameters

  • 4 restraints

  • H-atom parameters constrained

  • Δρmax = 1.55 e Å−3

  • Δρmin = −1.86 e Å−3

Data collection: KM-4 Software (Kuma, 1996); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022240/lh5258sup1.cif

e-67-0m923-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022240/lh5258Isup2.hkl

e-67-0m923-Isup2.hkl (220.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11C⋯O3i 0.96 2.59 3.509 (15) 162

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

Organotin carboxylates are extensively studied bexcause of their potential diversified biological applications. Trimethyltin carboxylates find use as antifungal (Gielen et al., 2005; Gielen, 2002) and antibacterial agents (Hameed et al., 2009; Ashhad et al., 2005). The title compound is part of our continued effort in this area (Danish et al., 2010, 2011). The structure of the title compound is composed of mononuclear molecules in which an Sn atom is coordinated by three methyl C atoms, one carboxylato O atom donated by a 2-methyl-3,5-dinitrobenzenecarboxylate ligand and an O atom from a DMSO ligand forming slightly distorted trigonal bipyramidal environment. The methyl C atoms form the equatorial plane. The Sn atom is displaced by 0.1082 (2) Å from the plane towards the carboxylate O atom. The latter and the DMSO O atom are in the axial sites. The Sn—C bond lengths range from 2.097 (3) to 2.121 (3) Å and are close to those reported earlier in the structures of other trimethyltin complexes (e.g. Danish et al., 2010). The 2-methyl-3,5-dintro-benzenecarboxylate ligand molecule is essentially planar with an r.m.s. deviation of 0.0041 (1) Å. The O atoms of one of the nitro groups show positional disorder with a major component occupancy of 0.55 (4). The other nitro group forms a dihedral angle of 5.9 (2)° with the methylbenzene ring. The carboxylate group donates a single O atom to the Sn atom. The observed Sn—O bond length of 2.106 (3) Å is typical (e.g. Danish et al., 2010, 2011). The closest intermolecular interaction is a weak C—H···O hydrogen bond.

Experimental

The sodium salt of 3,5-dinitro-o-toluic acid (2.48 g, 0.01 mol) was suspended in 25 ml of dry chloroform contained in a 100 ml round-bottom flask; trimethyltin chloride (2.00 g, 0.01 mol) was dissolved in 25 ml of dry chloroform was then added dropwise with constant stirring at room temperature. The reaction mixture was then refluxed in chloroform for 6 h and then brought to room temperature. Filtration was carried out to remove sodium chloride formed during the reaction. After evaporation, the solid mass was recrystallized from DMSO. m.p. 395 K; yield 88%.

Refinement

H atoms were placed in calculated positions with C—H = 0.93 for the benzene H atoms and 0.96 Å for methyl groups and treated as riding on the parent atoms with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl).

Figures

Fig. 1.

Fig. 1.

The molecular structure with 50% probability displacement ellipsoids. Atoms labeled O3A and O4A are the minor components of disorder.

Crystal data

[Sn(CH3)3(C7H5N2O6)(C2H6OS)] F(000) = 936
Mr = 467.06 Dx = 1.635 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 25 reflections
a = 9.6180 (19) Å θ = 6–15°
b = 12.971 (3) Å µ = 1.49 mm1
c = 15.612 (3) Å T = 293 K
β = 102.98 (3)° Plate, pale yellow
V = 1897.9 (7) Å3 0.42 × 0.24 × 0.08 mm
Z = 4

Data collection

Kuma KM-4 four-circle diffractometer 2464 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.030
graphite θmax = 28.0°, θmin = 2.1°
Profile data from ω/2θ scans h = 0→12
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) k = 0→17
Tmin = 0.753, Tmax = 0.890 l = −19→19
4755 measured reflections 3 standard reflections every 200 reflections
4500 independent reflections intensity decay: 0.2%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0947P)2] where P = (Fo2 + 2Fc2)/3
4500 reflections (Δ/σ)max = 0.001
242 parameters Δρmax = 1.55 e Å3
4 restraints Δρmin = −1.86 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Sn1 0.78174 (3) 0.49914 (2) 0.21581 (2) 0.04452 (13)
S1 1.10224 (14) 0.53273 (12) 0.15598 (9) 0.0519 (3)
O1 0.6418 (4) 0.4762 (3) 0.3068 (3) 0.0605 (10)
C4 0.2430 (5) 0.4664 (4) 0.4708 (3) 0.0520 (11)
H4 0.1832 0.4573 0.5094 0.062*
C2 0.4266 (5) 0.3988 (4) 0.3974 (3) 0.0468 (11)
C5 0.2474 (5) 0.5571 (4) 0.4271 (3) 0.0464 (11)
C1 0.4264 (4) 0.4929 (3) 0.3564 (3) 0.0433 (9)
O5 0.0655 (5) 0.6244 (4) 0.4846 (3) 0.0929 (15)
N2 0.1513 (5) 0.6424 (4) 0.4406 (3) 0.0634 (11)
O2 0.4719 (4) 0.5782 (3) 0.2313 (3) 0.0696 (11)
C3 0.3313 (5) 0.3894 (4) 0.4546 (3) 0.0507 (11)
C6 0.3363 (5) 0.5725 (4) 0.3706 (3) 0.0460 (10)
H6 0.3364 0.6353 0.3420 0.055*
C8 0.5152 (7) 0.3080 (4) 0.3837 (4) 0.0719 (16)
H8A 0.4854 0.2844 0.3241 0.108*
H8B 0.5032 0.2535 0.4230 0.108*
H8C 0.6138 0.3278 0.3951 0.108*
O7 0.9437 (4) 0.5132 (3) 0.1204 (3) 0.0582 (9)
C11 0.8247 (6) 0.6531 (4) 0.2547 (4) 0.0705 (16)
H11A 0.7725 0.6982 0.2102 0.106*
H11B 0.9251 0.6662 0.2628 0.106*
H11C 0.7963 0.6651 0.3090 0.106*
C14 1.1886 (6) 0.4276 (5) 0.1203 (5) 0.080 (2)
H14A 1.2873 0.4442 0.1249 0.121*
H14B 1.1443 0.4123 0.0602 0.121*
H14C 1.1816 0.3686 0.1562 0.121*
C13 0.9183 (7) 0.3843 (5) 0.2860 (4) 0.0768 (18)
H13A 0.8622 0.3330 0.3070 0.115*
H13B 0.9831 0.4154 0.3350 0.115*
H13C 0.9714 0.3527 0.2478 0.115*
C15 1.1490 (7) 0.6276 (5) 0.0867 (5) 0.0784 (18)
H15A 1.1406 0.5995 0.0289 0.118*
H15B 1.2456 0.6492 0.1098 0.118*
H15C 1.0862 0.6857 0.0838 0.118*
C12 0.6354 (6) 0.4555 (6) 0.1006 (4) 0.0708 (15)
H12A 0.6211 0.5118 0.0597 0.106*
H12B 0.5461 0.4376 0.1146 0.106*
H12C 0.6719 0.3971 0.0749 0.106*
O6 0.1644 (5) 0.7246 (4) 0.4073 (4) 0.0974 (16)
C7 0.5190 (5) 0.5193 (4) 0.2909 (4) 0.0508 (12)
N1 0.3216 (6) 0.2921 (4) 0.5005 (3) 0.0681 (13)
O4A 0.2078 (17) 0.2483 (18) 0.4785 (18) 0.104 (8) 0.45 (4)
O3A 0.414 (3) 0.258 (2) 0.555 (3) 0.175 (15) 0.45 (4)
O4 0.287 (4) 0.2135 (11) 0.4607 (9) 0.128 (9) 0.55 (4)
O3 0.3585 (19) 0.2947 (11) 0.5794 (5) 0.084 (5) 0.55 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Sn1 0.03448 (18) 0.0566 (2) 0.0461 (2) 0.00010 (14) 0.01663 (12) 0.00159 (15)
S1 0.0403 (6) 0.0702 (7) 0.0495 (7) −0.0029 (6) 0.0192 (5) −0.0052 (6)
O1 0.048 (2) 0.077 (2) 0.065 (2) 0.0068 (17) 0.0314 (17) 0.0058 (18)
C4 0.046 (3) 0.063 (3) 0.051 (3) −0.011 (2) 0.020 (2) −0.007 (2)
C2 0.035 (2) 0.054 (3) 0.053 (3) −0.009 (2) 0.0140 (19) −0.011 (2)
C5 0.031 (2) 0.057 (3) 0.054 (3) −0.004 (2) 0.0159 (19) −0.005 (2)
C1 0.0305 (19) 0.059 (3) 0.043 (2) −0.0075 (19) 0.0135 (16) −0.004 (2)
O5 0.076 (3) 0.111 (4) 0.114 (4) 0.020 (3) 0.067 (3) 0.008 (3)
N2 0.051 (3) 0.075 (3) 0.069 (3) 0.008 (2) 0.024 (2) −0.008 (2)
O2 0.056 (2) 0.093 (3) 0.067 (3) 0.011 (2) 0.0278 (19) 0.022 (2)
C3 0.044 (3) 0.058 (3) 0.054 (3) −0.014 (2) 0.019 (2) −0.004 (2)
C6 0.039 (2) 0.056 (3) 0.046 (3) −0.004 (2) 0.018 (2) 0.000 (2)
C8 0.068 (4) 0.062 (3) 0.096 (4) 0.001 (3) 0.040 (3) −0.002 (3)
O7 0.0427 (18) 0.085 (3) 0.053 (2) −0.0081 (16) 0.0236 (15) −0.0030 (17)
C11 0.063 (4) 0.070 (4) 0.085 (4) −0.011 (3) 0.029 (3) −0.014 (3)
C14 0.049 (3) 0.074 (4) 0.123 (6) 0.010 (3) 0.029 (4) 0.003 (4)
C13 0.070 (4) 0.094 (4) 0.072 (4) 0.023 (3) 0.030 (3) 0.023 (3)
C15 0.064 (4) 0.069 (4) 0.111 (5) −0.011 (3) 0.039 (3) 0.003 (4)
C12 0.048 (3) 0.105 (4) 0.062 (3) −0.014 (3) 0.019 (3) −0.018 (3)
O6 0.096 (4) 0.070 (3) 0.144 (5) 0.024 (3) 0.065 (3) 0.014 (3)
C7 0.041 (2) 0.063 (3) 0.056 (3) −0.005 (2) 0.026 (2) −0.001 (2)
N1 0.074 (4) 0.065 (3) 0.074 (4) −0.020 (3) 0.035 (3) −0.001 (3)
O4A 0.104 (11) 0.084 (11) 0.126 (15) −0.031 (9) 0.030 (9) 0.033 (9)
O3A 0.099 (15) 0.084 (15) 0.29 (3) −0.014 (10) −0.067 (17) 0.097 (17)
O4 0.22 (2) 0.076 (7) 0.109 (8) −0.068 (10) 0.075 (11) −0.036 (6)
O3 0.116 (10) 0.063 (7) 0.073 (8) −0.003 (6) 0.018 (6) 0.019 (4)

Geometric parameters (Å, °)

Sn1—C12 2.097 (5) C8—H8B 0.9600
Sn1—C11 2.101 (5) C8—H8C 0.9600
Sn1—C13 2.121 (6) C11—H11A 0.9600
Sn1—O1 2.186 (4) C11—H11B 0.9600
Sn1—O7 2.391 (4) C11—H11C 0.9600
S1—O7 1.523 (4) C14—H14A 0.9600
S1—C14 1.752 (6) C14—H14B 0.9600
S1—C15 1.761 (6) C14—H14C 0.9600
O1—C7 1.280 (6) C13—H13A 0.9600
C4—C5 1.366 (7) C13—H13B 0.9600
C4—C3 1.371 (7) C13—H13C 0.9600
C4—H4 0.9300 C15—H15A 0.9600
C2—C1 1.379 (6) C15—H15B 0.9600
C2—C3 1.420 (7) C15—H15C 0.9600
C2—C8 1.497 (7) C12—H12A 0.9600
C5—C6 1.374 (6) C12—H12B 0.9600
C5—N2 1.486 (6) C12—H12C 0.9600
C1—C6 1.398 (6) N1—O3A 1.174 (9)
C1—C7 1.537 (6) N1—O3 1.205 (8)
O5—N2 1.210 (6) N1—O4 1.201 (8)
N2—O6 1.205 (6) N1—O4A 1.213 (8)
O2—C7 1.210 (6) O4A—O4 0.981 (17)
C3—N1 1.464 (7) O3A—O3 0.87 (4)
C6—H6 0.9300 O3A—O4 1.78 (2)
C8—H8A 0.9600
C12—Sn1—C11 123.7 (3) H11B—C11—H11C 109.5
C12—Sn1—C13 118.2 (3) S1—C14—H14A 109.5
C11—Sn1—C13 117.3 (3) S1—C14—H14B 109.5
C12—Sn1—O1 97.35 (19) H14A—C14—H14B 109.5
C11—Sn1—O1 92.95 (19) S1—C14—H14C 109.5
C13—Sn1—O1 88.19 (19) H14A—C14—H14C 109.5
C12—Sn1—O7 83.81 (18) H14B—C14—H14C 109.5
C11—Sn1—O7 89.68 (18) Sn1—C13—H13A 109.5
C13—Sn1—O7 87.77 (19) Sn1—C13—H13B 109.5
O1—Sn1—O7 175.87 (12) H13A—C13—H13B 109.5
O7—S1—C14 105.2 (3) Sn1—C13—H13C 109.5
O7—S1—C15 105.4 (3) H13A—C13—H13C 109.5
C14—S1—C15 98.3 (3) H13B—C13—H13C 109.5
C7—O1—Sn1 119.4 (3) S1—C15—H15A 109.5
C5—C4—C3 116.5 (5) S1—C15—H15B 109.5
C5—C4—H4 121.7 H15A—C15—H15B 109.5
C3—C4—H4 121.7 S1—C15—H15C 109.5
C1—C2—C3 115.8 (4) H15A—C15—H15C 109.5
C1—C2—C8 124.8 (4) H15B—C15—H15C 109.5
C3—C2—C8 119.4 (5) Sn1—C12—H12A 109.5
C4—C5—C6 122.6 (5) Sn1—C12—H12B 109.5
C4—C5—N2 118.8 (4) H12A—C12—H12B 109.5
C6—C5—N2 118.7 (4) Sn1—C12—H12C 109.5
C2—C1—C6 121.1 (4) H12A—C12—H12C 109.5
C2—C1—C7 124.5 (4) H12B—C12—H12C 109.5
C6—C1—C7 114.4 (4) O2—C7—O1 126.5 (5)
O6—N2—O5 124.6 (5) O2—C7—C1 118.6 (4)
O6—N2—C5 117.9 (4) O1—C7—C1 114.9 (5)
O5—N2—C5 117.5 (5) O3A—N1—O3 43 (2)
C4—C3—C2 124.5 (5) O3A—N1—O4 97.4 (14)
C4—C3—N1 115.3 (5) O3—N1—O4 122.4 (10)
C2—C3—N1 120.2 (5) O3A—N1—O4A 121.3 (13)
C5—C6—C1 119.5 (4) O3—N1—O4A 110.0 (13)
C5—C6—H6 120.2 O4—N1—O4A 48.0 (8)
C1—C6—H6 120.2 O3A—N1—C3 124.0 (11)
C2—C8—H8A 109.5 O3—N1—C3 116.1 (7)
C2—C8—H8B 109.5 O4—N1—C3 121.3 (8)
H8A—C8—H8B 109.5 O4A—N1—C3 114.8 (8)
C2—C8—H8C 109.5 O4—O4A—N1 65.4 (8)
H8A—C8—H8C 109.5 O3—O3A—N1 70.4 (12)
H8B—C8—H8C 109.5 O3—O3A—O4 99.4 (19)
S1—O7—Sn1 121.6 (2) N1—O3A—O4 41.9 (8)
Sn1—C11—H11A 109.5 O4A—O4—N1 66.6 (8)
Sn1—C11—H11B 109.5 O4A—O4—O3A 92.9 (14)
H11A—C11—H11B 109.5 N1—O4—O3A 40.7 (7)
Sn1—C11—H11C 109.5 O3A—O3—N1 66.6 (14)
H11A—C11—H11C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C11—H11C···O3i 0.96 2.59 3.509 (15) 162.

Symmetry codes: (i) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5258).

References

  1. Ashhad, A. M. S., Islam, N. & Saeed, M. (2005). Malasiyan J. Pharm. Sci. 3, 11-18.
  2. Danish, M., Saleem, I., Ahmad, N., Starosta, W. & Leciejewicz, J. (2010). Acta Cryst. E66, m4. [DOI] [PMC free article] [PubMed]
  3. Danish, M., Ghafoor, S., Ahmad, N., Starosta, W. & Leciejewicz, J. (2011). Acta Cryst. E67, m519. [DOI] [PMC free article] [PubMed]
  4. Gielen, M. (2002). Appl. Organomet. Chem. 16, 481–486.
  5. Gielen, M., Biesemans, M. & Wielem, M. (2005). J. Organomet. Chem. 19, 440–449.
  6. Hameed, A., Mohamad, T., Elbay Saad, E., Farina, Y., Graisa, A. & Yousif, E. (2009). Eur. J. Sci. Res. pp. 212–217.
  7. Kuma (1996). KM-4 Software Kuma Diffraction Ltd, Wrocław, Poland.
  8. Kuma (2001). DATAPROC Kuma Diffraction Ltd, Wrocław, Poland.
  9. Oxford Diffraction (2008). CrysAlis RED Oxford Diffraction Ltd, Abingdon, Oxfordshire, England.
  10. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022240/lh5258sup1.cif

e-67-0m923-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022240/lh5258Isup2.hkl

e-67-0m923-Isup2.hkl (220.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES