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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 30;67(Pt 7):o1832. doi: 10.1107/S1600536811024524

N,N′-[4,4′-Methyl­enebis(4,1-phenyl­ene)]bis­(2,6-difluoro­benzamide)

Mohammad T M Al-Dajani a, Jamal Talaat b, Nornisah Mohamed a, Madhukar Hemamalini c, Hoong-Kun Fun c,*,
PMCID: PMC3151792  PMID: 21837199

Abstract

The complete mol­ecule of the title compound, C27H18F4N2O2, is generated by crystallographic twofold symmetry, with one C atom lying on the rotation axis. The dihedral angle between fluoro-substituted phenyl ring and the adjacent benzene ring is 10.37 (5)°. In the crystal, mol­ecules are connected by N—H⋯O and C—H⋯F hydrogen bonds, resulting in supra­molecular chains propagating along the c direction.

Related literature

For applications of benzamide derivatives, see: Ashwood et al. (1990); Kees et al. (1989); Ragavan et al. (2010); Carmellino et al. (1994); Rauko et al. (2001). For a related structure, see: Cronin et al. (2000). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).graphic file with name e-67-o1832-scheme1.jpg

Experimental

Crystal data

  • C27H18F4N2O2

  • M r = 478.43

  • Monoclinic, Inline graphic

  • a = 42.0478 (10) Å

  • b = 5.2980 (1) Å

  • c = 9.5643 (2) Å

  • β = 92.522 (2)°

  • V = 2128.57 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 100 K

  • 0.48 × 0.38 × 0.05 mm

Data collection

  • Bruker APEXII DUO CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.946, T max = 0.994

  • 26445 measured reflections

  • 3871 independent reflections

  • 3172 reflections with I > 2σ(I)

  • R int = 0.031

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.114

  • S = 1.06

  • 3871 reflections

  • 163 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024524/hb5924sup1.cif

e-67-o1832-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024524/hb5924Isup2.hkl

e-67-o1832-Isup2.hkl (186KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024524/hb5924Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N1⋯O1i 0.841 (15) 2.078 (15) 2.8811 (11) 159.4 (14)
C9—H9A⋯F1ii 0.95 2.41 3.2318 (11) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

NM gratefully acknowledges funding from Universiti Sains Malaysia under the University Research Grant (No. 1001/PFARMASI/821142). HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.

supplementary crystallographic information

Comment

A number of benzamide derivatives were reported to possess anti-hypertensive (Ashwood et al., 1990), anti-diabetic (Kees et al., 1989), anti-bacterial (Ragavan et al., 2010), anti-fungal (Carmellino et al., 1994) and anti-cancer (Rauko et al., 2001) activities. As a part of our study on the synthesis of new fluorine- containing compounds with possible biological activities, we report here the crystal structure of the title compound, (I).

The asymmetric unit of the title compound, (Fig. 1), consists of a half molecule of N,N'-(4,4'-methylenebis(4,1-phenylene))bis (2,6-difluorobenzamide), which has a twofold symmetry and it adopts an E, E conformation. The dihedral angle between fluoro- substituted phenyl (C1–C6) rings and benzene (C8–13) ring is 10.37 (5)°. All bond lengths and angles are comparable to values observed in a closely related benzamide structure (Cronin et al., 2000).

In the crystal structure (Fig. 2), the adjacent molecules are connected via N1—H1N1..O1 and C9—H9A···F1 (Table 1) hydrogen bonds forming one-dimensional supramolecular chains along the c-axis.

Experimental

In a round bottom flask, 25ml of tetrahydrofuran (THF) was mixed with 4,4'-diaminodiphenylmethane (0.01 mol,2 g) with stirring. Drops of 2,6-Difluorobenzylchloride (0.02 mol, 3.4 g ) which was dissolved in THF was then added. The mixture was refluxed for 30 min and the yellow precipitate formed was filtered and washed with alkaline water, then with toluene and further washed with dilute hydrochloric acid. The precipate was dissolved in methanol at room temperature yielding colourless plates of (I).

Refinement

Atom H1N1 was located from a difference Fourier maps and refined freely [N–H = 0.842 (15) Å]. The remaining H atoms were positioned geometrically [C–H = 0.95–0.9601 Å] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). The highest residual electron density peak is located at 0.61 Å from C6 and the deepest hole 0.64 Å located at from C1.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

A view of a one-dimensional supramolecular chain along the c-axis

Crystal data

C27H18F4N2O2 F(000) = 984
Mr = 478.43 Dx = 1.493 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 8910 reflections
a = 42.0478 (10) Å θ = 2.9–32.5°
b = 5.2980 (1) Å µ = 0.12 mm1
c = 9.5643 (2) Å T = 100 K
β = 92.522 (2)° Plate, colourless
V = 2128.57 (8) Å3 0.48 × 0.38 × 0.05 mm
Z = 4

Data collection

Bruker APEXII DUO CCD diffractometer 3871 independent reflections
Radiation source: fine-focus sealed tube 3172 reflections with I > 2σ(I)
graphite Rint = 0.031
φ and ω scans θmax = 32.6°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −63→63
Tmin = 0.946, Tmax = 0.994 k = −7→7
26445 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0569P)2 + 1.3081P] where P = (Fo2 + 2Fc2)/3
3871 reflections (Δ/σ)max < 0.001
163 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 0.131371 (14) 0.52803 (12) 0.04350 (6) 0.02016 (14)
F2 0.201443 (15) 1.06377 (13) 0.30050 (7) 0.02303 (15)
O1 0.136883 (18) 0.97437 (15) 0.36217 (7) 0.02009 (16)
N1 0.113987 (19) 1.00956 (16) 0.14156 (8) 0.01541 (16)
C1 0.16118 (2) 0.60034 (18) 0.08307 (9) 0.01554 (17)
C2 0.18629 (3) 0.4631 (2) 0.03344 (10) 0.01989 (19)
H2A 0.1826 0.3219 −0.0264 0.024*
C3 0.21695 (2) 0.5379 (2) 0.07365 (11) 0.0223 (2)
H3A 0.2346 0.4482 0.0398 0.027*
C4 0.22225 (2) 0.7422 (2) 0.16280 (11) 0.0207 (2)
H4A 0.2433 0.7941 0.1895 0.025*
C5 0.19617 (2) 0.86802 (19) 0.21155 (10) 0.01656 (18)
C6 0.16482 (2) 0.80494 (17) 0.17353 (9) 0.01396 (16)
C7 0.13715 (2) 0.93935 (17) 0.23513 (9) 0.01430 (17)
C8 0.08569 (2) 1.13880 (18) 0.17534 (9) 0.01475 (17)
C9 0.08638 (2) 1.33660 (19) 0.27115 (10) 0.01791 (18)
H9A 0.1058 1.3826 0.3189 0.021*
C10 0.05852 (2) 1.46660 (19) 0.29678 (10) 0.01816 (18)
H10A 0.0591 1.6004 0.3630 0.022*
C11 0.02971 (2) 1.40427 (18) 0.22709 (10) 0.01674 (18)
C12 0.02942 (2) 1.20383 (19) 0.13243 (11) 0.01962 (19)
H12A 0.0100 1.1570 0.0852 0.024*
C13 0.05708 (2) 1.07101 (19) 0.10588 (10) 0.01794 (18)
H13A 0.0565 0.9352 0.0409 0.022*
C14 0.0000 1.5573 (3) 0.2500 0.0213 (3)
H14A −0.0040 1.6645 0.1702 0.026*
H1N1 0.1173 (3) 0.984 (3) 0.0566 (16) 0.023 (4)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0186 (3) 0.0209 (3) 0.0208 (3) −0.0022 (2) −0.0022 (2) −0.0022 (2)
F2 0.0207 (3) 0.0257 (3) 0.0225 (3) −0.0035 (2) −0.0013 (2) −0.0072 (2)
O1 0.0220 (3) 0.0272 (4) 0.0112 (3) 0.0051 (3) 0.0022 (2) 0.0005 (3)
N1 0.0144 (3) 0.0210 (4) 0.0110 (3) 0.0032 (3) 0.0022 (3) −0.0003 (3)
C1 0.0159 (4) 0.0180 (4) 0.0127 (4) 0.0003 (3) 0.0000 (3) 0.0020 (3)
C2 0.0249 (5) 0.0197 (5) 0.0151 (4) 0.0056 (4) 0.0019 (3) −0.0017 (3)
C3 0.0201 (4) 0.0269 (5) 0.0202 (4) 0.0078 (4) 0.0043 (4) 0.0006 (4)
C4 0.0148 (4) 0.0268 (5) 0.0205 (4) 0.0026 (3) 0.0012 (3) 0.0017 (4)
C5 0.0168 (4) 0.0189 (4) 0.0139 (4) −0.0001 (3) −0.0001 (3) −0.0001 (3)
C6 0.0146 (4) 0.0161 (4) 0.0112 (3) 0.0008 (3) 0.0011 (3) 0.0009 (3)
C7 0.0150 (4) 0.0151 (4) 0.0130 (4) 0.0003 (3) 0.0022 (3) 0.0010 (3)
C8 0.0137 (4) 0.0176 (4) 0.0132 (4) 0.0012 (3) 0.0024 (3) 0.0011 (3)
C9 0.0151 (4) 0.0220 (4) 0.0166 (4) 0.0002 (3) 0.0003 (3) −0.0031 (3)
C10 0.0166 (4) 0.0194 (4) 0.0186 (4) 0.0005 (3) 0.0023 (3) −0.0036 (3)
C11 0.0139 (4) 0.0158 (4) 0.0208 (4) 0.0000 (3) 0.0042 (3) 0.0014 (3)
C12 0.0145 (4) 0.0198 (4) 0.0244 (5) −0.0008 (3) −0.0001 (3) −0.0023 (4)
C13 0.0166 (4) 0.0185 (4) 0.0187 (4) 0.0000 (3) 0.0004 (3) −0.0032 (3)
C14 0.0140 (6) 0.0159 (6) 0.0343 (8) 0.000 0.0044 (5) 0.000

Geometric parameters (Å, °)

F1—C1 1.3489 (11) C6—C7 1.5058 (13)
F2—C5 1.3534 (11) C8—C9 1.3916 (13)
O1—C7 1.2297 (11) C8—C13 1.3954 (13)
N1—C7 1.3459 (12) C9—C10 1.3901 (13)
N1—C8 1.4222 (12) C9—H9A 0.9500
N1—H1N1 0.842 (15) C10—C11 1.3963 (13)
C1—C2 1.3828 (13) C10—H10A 0.9500
C1—C6 1.3911 (13) C11—C12 1.3952 (14)
C2—C3 1.3870 (15) C11—C14 1.5131 (12)
C2—H2A 0.9500 C12—C13 1.3922 (13)
C3—C4 1.3899 (15) C12—H12A 0.9500
C3—H3A 0.9500 C13—H13A 0.9500
C4—C5 1.3815 (13) C14—C11i 1.5131 (12)
C4—H4A 0.9500 C14—H14A 0.9601
C5—C6 1.3929 (12)
C7—N1—C8 124.77 (8) N1—C7—C6 114.80 (8)
C7—N1—H1N1 116.8 (10) C9—C8—C13 119.99 (9)
C8—N1—H1N1 118.2 (10) C9—C8—N1 121.25 (8)
F1—C1—C2 117.93 (9) C13—C8—N1 118.70 (8)
F1—C1—C6 118.10 (8) C10—C9—C8 119.73 (9)
C2—C1—C6 123.96 (9) C10—C9—H9A 120.1
C1—C2—C3 117.96 (9) C8—C9—H9A 120.1
C1—C2—H2A 121.0 C9—C10—C11 121.26 (9)
C3—C2—H2A 121.0 C9—C10—H10A 119.4
C2—C3—C4 120.98 (9) C11—C10—H10A 119.4
C2—C3—H3A 119.5 C12—C11—C10 118.18 (9)
C4—C3—H3A 119.5 C12—C11—C14 121.20 (8)
C5—C4—C3 118.33 (9) C10—C11—C14 120.57 (8)
C5—C4—H4A 120.8 C13—C12—C11 121.31 (9)
C3—C4—H4A 120.8 C13—C12—H12A 119.3
F2—C5—C4 118.12 (8) C11—C12—H12A 119.3
F2—C5—C6 118.35 (8) C12—C13—C8 119.51 (9)
C4—C5—C6 123.53 (9) C12—C13—H13A 120.2
C1—C6—C5 115.22 (8) C8—C13—H13A 120.2
C1—C6—C7 123.11 (8) C11—C14—C11i 115.22 (11)
C5—C6—C7 121.53 (8) C11—C14—H14A 108.5
O1—C7—N1 125.27 (9) C11i—C14—H14A 108.4
O1—C7—C6 119.92 (8)
F1—C1—C2—C3 179.76 (9) C5—C6—C7—O1 −46.84 (13)
C6—C1—C2—C3 −1.62 (15) C1—C6—C7—N1 −50.49 (12)
C1—C2—C3—C4 0.95 (16) C5—C6—C7—N1 133.95 (9)
C2—C3—C4—C5 0.57 (16) C7—N1—C8—C9 42.34 (14)
C3—C4—C5—F2 178.73 (9) C7—N1—C8—C13 −140.39 (10)
C3—C4—C5—C6 −1.60 (15) C13—C8—C9—C10 −0.27 (15)
F1—C1—C6—C5 179.29 (8) N1—C8—C9—C10 176.96 (9)
C2—C1—C6—C5 0.68 (14) C8—C9—C10—C11 −0.61 (15)
F1—C1—C6—C7 3.47 (13) C9—C10—C11—C12 1.22 (15)
C2—C1—C6—C7 −175.14 (9) C9—C10—C11—C14 −176.46 (9)
F2—C5—C6—C1 −179.35 (8) C10—C11—C12—C13 −0.98 (15)
C4—C5—C6—C1 0.98 (14) C14—C11—C12—C13 176.68 (9)
F2—C5—C6—C7 −3.46 (13) C11—C12—C13—C8 0.14 (15)
C4—C5—C6—C7 176.87 (9) C9—C8—C13—C12 0.50 (15)
C8—N1—C7—O1 0.91 (16) N1—C8—C13—C12 −176.80 (9)
C8—N1—C7—C6 −179.94 (8) C12—C11—C14—C11i 47.96 (8)
C1—C6—C7—O1 128.72 (10) C10—C11—C14—C11i −134.43 (10)

Symmetry codes: (i) −x, y, −z+1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N1···O1ii 0.841 (15) 2.078 (15) 2.8811 (11) 159.4 (14)
C9—H9A···F1iii 0.95 2.41 3.2318 (11) 145

Symmetry codes: (ii) x, −y+2, z−1/2; (iii) x, −y+2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5924).

References

  1. Ashwood, V. A., Cassidy, F., Coldwell, M. C., Evans, J. M., Hamilton, T. C., Howlett, D. R., Smith, D. M. & Stemp, G. (1990). J. Med. Chem. 33, 2667–2672. [DOI] [PubMed]
  2. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Carmellino, M. L., Pagani, G., Pregnolato, M., Terreni, M. & Pastoni, F. (1994). Eur. J. Med. Chem. 29, 743–751.
  4. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
  5. Cronin, L., Adams, D. A., Nightingale, D. J. & Clark, J. H. (2000). Acta Cryst. C56, 244–245. [DOI] [PubMed]
  6. Kees, K. L., Cheeseman, R. S., Prozialeck, D. H. & Steiner, K. E. (1989). J. Med. Chem. 32, 11–13. [DOI] [PubMed]
  7. Ragavan, R. V., Vijayakumar, V. & Suchetha Kumari, N. (2010). Eur. J. Med. Chem. 43, 1173–1180. [DOI] [PubMed]
  8. Rauko, P., Novotny, L., Dovinova, I., Hunakova, L., Szekeres, T. & Jayaram, H. N. (2001). Eur. J. Pharm. Sci. 12, 387–394. [DOI] [PubMed]
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024524/hb5924sup1.cif

e-67-o1832-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024524/hb5924Isup2.hkl

e-67-o1832-Isup2.hkl (186KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024524/hb5924Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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