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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 18;67(Pt 7):o1712. doi: 10.1107/S1600536811023063

2-[(E)-(2,4-Dichloro­benzyl­idene)amino]­isoindoline-1,3-dione

Mohammad Asad a, Chuan-Wei Oo a,, Hasnah Osman a, Madhukar Hemamalini b, Hoong-Kun Fun b,*,§
PMCID: PMC3151809  PMID: 21837105

Abstract

In the title compound, C15H8Cl2N2O2, the mol­ecule adopts an E configuration about the central C=N double bond. The isoindoline ring is essentially planar, with a maximum deviation of 0.019 (2) Å. The dihedral angle between the isoindoline ring and the dichloro-substituted benzene ring is 6.54 (9)°. An intra­molecular C—H⋯O hydrogen bond occurs. A short Cl⋯Cl contact of 3.4027 (9) Å is present in the crystal structure. The crystal packing is further stabilized by weak C—H⋯π inter­actions.

Related literature

For the coordination ability and biological activity of Schiff bases, see: Bhunora et al. (2011); Gupta & Sutar (2008); Sridhar et al., (2001); Mladenova et al. (2002); Bharti et al. (2010); Tenorio et al. (2005); Liu et al. (1992); Hodnett & Dunn (1970).graphic file with name e-67-o1712-scheme1.jpg

Experimental

Crystal data

  • C15H8Cl2N2O2

  • M r = 319.13

  • Monoclinic, Inline graphic

  • a = 8.0387 (8) Å

  • b = 7.6981 (8) Å

  • c = 22.2686 (19) Å

  • β = 101.828 (3)°

  • V = 1348.8 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.49 mm−1

  • T = 296 K

  • 0.44 × 0.19 × 0.15 mm

Data collection

  • Bruker APEXII DUO CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.815, T max = 0.930

  • 13900 measured reflections

  • 3902 independent reflections

  • 2795 reflections with I > 2σ(I)

  • R int = 0.033

Refinement

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.113

  • S = 1.07

  • 3902 reflections

  • 190 parameters

  • H-atom parameters constrained

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.42 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023063/rz2609sup1.cif

e-67-o1712-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023063/rz2609Isup2.hkl

e-67-o1712-Isup2.hkl (191.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811023063/rz2609Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C7—H7A⋯O1 0.93 2.18 2.857 (2) 129
C2—H2ACg1i 0.93 2.81 3.663 (2) 153

Symmetry code: (i) Inline graphic.

Acknowledgments

MA, CWO and HO thank Universiti Sains Malaysia (USM) for providing the necessary research facilities and RU research funding under grant No. 1001/PKIMIA/811134. MA also thanks USM for the award of a post-doctoral fellowship. HKF and MH thank the Malaysian Government and USM for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.

supplementary crystallographic information

Comment

Schiff bases have been prepared from the condensation of aldehydes or ketones with amines and their coordination ability with metal ions such as copper (II), cobalt (II), iron (II) and zinc (II) (Bhunora et al., 2011; Gupta & Sutar, 2008) has been studied. Many Schiff bases have been reported to possess antibacterial (Sridhar et al.,, 2001; Mladenova et al., 2002); antifungal (Bharti et al., 2010; Tenorio et al., 2005); and antitumor activities (Liu et al., 1992; Hodnett & Dunn, 1970).

In the title compound (Fig. 1), the molecule adopts an E configuration about the central C7═N1 double bond. The isoindoline ring is essentially planar, with a maximum deviation of 0.019 (2) Å for atom C8. The dihedral angle between the isoindoline ring and the dichloro-substituted phenyl ring is 6.54 (9)°. An intramolecular C—H···O hydrogen bond which generates an S(6) ring motif and a short Cl···Cl contact of 3.4027 (9) Å are present in the crystal structure. The crystal packing (Fig. 2) is further stabilized by a weak C—H···π (Table 1) interactions involving the C1–C6 ring.

Experimental

A mixture of 2-amino-1,3-isoindolinedione (6.15 mmol, 1.0 g) and 2,4-dichloro benzaldehyde (6.15 mmol, 1.08 g) was dissolved in an appropriate amount of ethanol-glacial acetic acid (2:1 v/v). The mixture was refluxed on water-bath for 0.5 hr to give a white colour precipitate. The solution was cooled at room temperature, filtered off, washed with ethanol and dried. The isolated product was recrystallized from chloroform-methanol (1:1 v/v)to get the new Schiff base in 80% yield.

Refinement

All hydrogen atoms were positioned geometrically [C–H = 0.93 Å] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing 30% probability displacement ellipsoids. The intramolecular C—H···O hydrogen bond is shown as a dashed line.

Fig. 2.

Fig. 2.

The crystal packing of the title compound viewed down the a axis. Hydrogen atoms are omitted for clarity.

Crystal data

C15H8Cl2N2O2 F(000) = 648
Mr = 319.13 Dx = 1.572 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4526 reflections
a = 8.0387 (8) Å θ = 2.8–29.8°
b = 7.6981 (8) Å µ = 0.49 mm1
c = 22.2686 (19) Å T = 296 K
β = 101.828 (3)° Block, colourless
V = 1348.8 (2) Å3 0.44 × 0.19 × 0.15 mm
Z = 4

Data collection

Bruker APEXII DUO CCD area-detector diffractometer 3902 independent reflections
Radiation source: fine-focus sealed tube 2795 reflections with I > 2σ(I)
graphite Rint = 0.033
φ and ω scans θmax = 30.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −10→11
Tmin = 0.815, Tmax = 0.930 k = −10→10
13900 measured reflections l = −31→29

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0331P)2 + 0.9203P] where P = (Fo2 + 2Fc2)/3
3902 reflections (Δ/σ)max = 0.001
190 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.42 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.72877 (6) −0.18254 (8) 0.79982 (3) 0.05067 (17)
Cl2 1.31606 (7) −0.18842 (9) 0.72366 (3) 0.05889 (19)
O1 0.58896 (19) 0.1209 (2) 0.93934 (8) 0.0566 (5)
O2 1.08478 (17) 0.3584 (2) 1.04839 (7) 0.0457 (4)
N1 0.9657 (2) 0.1599 (2) 0.94538 (8) 0.0374 (4)
N2 0.86224 (19) 0.2180 (2) 0.98379 (7) 0.0347 (4)
C1 0.9387 (2) −0.1149 (3) 0.81141 (9) 0.0337 (4)
C2 1.0327 (2) −0.1710 (3) 0.76903 (9) 0.0366 (4)
H2A 0.9837 −0.2409 0.7361 0.044*
C3 1.2005 (2) −0.1199 (3) 0.77727 (9) 0.0369 (4)
C4 1.2766 (2) −0.0181 (3) 0.82651 (9) 0.0387 (4)
H4A 1.3906 0.0127 0.8319 0.046*
C5 1.1798 (2) 0.0371 (3) 0.86757 (9) 0.0367 (4)
H5A 1.2299 0.1064 0.9005 0.044*
C6 1.0085 (2) −0.0087 (3) 0.86084 (8) 0.0330 (4)
C7 0.9041 (2) 0.0526 (3) 0.90345 (9) 0.0378 (4)
H7A 0.7932 0.0130 0.8997 0.045*
C8 0.6843 (2) 0.2004 (3) 0.97890 (9) 0.0366 (4)
C9 0.6452 (2) 0.3000 (3) 1.03100 (9) 0.0339 (4)
C10 0.4911 (3) 0.3240 (3) 1.04859 (10) 0.0413 (5)
H10A 0.3918 0.2728 1.0271 0.050*
C11 0.4911 (3) 0.4273 (3) 1.09946 (10) 0.0449 (5)
H11A 0.3897 0.4458 1.1125 0.054*
C12 0.6395 (3) 0.5040 (3) 1.13147 (10) 0.0491 (5)
H12A 0.6356 0.5733 1.1654 0.059*
C13 0.7941 (3) 0.4787 (3) 1.11370 (9) 0.0436 (5)
H13A 0.8937 0.5295 1.1351 0.052*
C14 0.7933 (2) 0.3755 (3) 1.06312 (9) 0.0336 (4)
C15 0.9360 (2) 0.3247 (3) 1.03399 (9) 0.0338 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0330 (2) 0.0650 (4) 0.0558 (3) −0.0135 (2) 0.0131 (2) −0.0105 (3)
Cl2 0.0444 (3) 0.0766 (5) 0.0621 (4) −0.0071 (3) 0.0259 (3) −0.0224 (3)
O1 0.0355 (8) 0.0710 (12) 0.0616 (10) −0.0063 (8) 0.0057 (7) −0.0274 (9)
O2 0.0290 (7) 0.0587 (10) 0.0490 (9) −0.0036 (7) 0.0069 (6) −0.0061 (7)
N1 0.0326 (8) 0.0425 (10) 0.0388 (9) 0.0032 (7) 0.0114 (7) −0.0030 (7)
N2 0.0294 (7) 0.0386 (9) 0.0368 (8) 0.0007 (7) 0.0082 (6) −0.0035 (7)
C1 0.0275 (8) 0.0357 (10) 0.0377 (10) −0.0017 (7) 0.0060 (7) 0.0023 (8)
C2 0.0338 (9) 0.0388 (11) 0.0370 (10) −0.0015 (8) 0.0066 (8) −0.0031 (9)
C3 0.0322 (9) 0.0411 (11) 0.0394 (10) 0.0022 (8) 0.0123 (8) −0.0018 (9)
C4 0.0279 (9) 0.0432 (12) 0.0446 (11) −0.0031 (8) 0.0068 (8) −0.0020 (9)
C5 0.0336 (9) 0.0387 (11) 0.0364 (10) −0.0007 (8) 0.0036 (7) −0.0033 (8)
C6 0.0319 (9) 0.0342 (10) 0.0331 (9) 0.0018 (8) 0.0071 (7) 0.0024 (8)
C7 0.0329 (9) 0.0434 (12) 0.0383 (10) 0.0007 (8) 0.0101 (8) −0.0014 (9)
C8 0.0293 (9) 0.0395 (11) 0.0408 (10) 0.0015 (8) 0.0065 (8) −0.0010 (9)
C9 0.0301 (9) 0.0350 (11) 0.0373 (10) 0.0013 (8) 0.0082 (7) 0.0027 (8)
C10 0.0322 (9) 0.0433 (12) 0.0499 (12) −0.0011 (9) 0.0116 (8) 0.0036 (10)
C11 0.0407 (11) 0.0473 (13) 0.0517 (12) 0.0051 (9) 0.0216 (9) 0.0036 (10)
C12 0.0541 (13) 0.0529 (14) 0.0445 (12) 0.0032 (11) 0.0198 (10) −0.0054 (10)
C13 0.0411 (11) 0.0498 (13) 0.0401 (11) −0.0012 (10) 0.0084 (8) −0.0066 (10)
C14 0.0309 (9) 0.0348 (10) 0.0354 (9) 0.0017 (8) 0.0077 (7) 0.0029 (8)
C15 0.0295 (8) 0.0372 (11) 0.0348 (9) −0.0003 (8) 0.0071 (7) 0.0015 (8)

Geometric parameters (Å, °)

Cl1—C1 1.7338 (19) C5—H5A 0.9300
Cl2—C3 1.7383 (19) C6—C7 1.467 (3)
O1—C8 1.209 (2) C7—H7A 0.9300
O2—C15 1.201 (2) C8—C9 1.477 (3)
N1—C7 1.268 (3) C9—C14 1.385 (3)
N1—N2 1.384 (2) C9—C10 1.386 (3)
N2—C15 1.416 (3) C10—C11 1.384 (3)
N2—C8 1.419 (2) C10—H10A 0.9300
C1—C2 1.393 (3) C11—C12 1.390 (3)
C1—C6 1.393 (3) C11—H11A 0.9300
C2—C3 1.381 (3) C12—C13 1.393 (3)
C2—H2A 0.9300 C12—H12A 0.9300
C3—C4 1.384 (3) C13—C14 1.377 (3)
C4—C5 1.384 (3) C13—H13A 0.9300
C4—H4A 0.9300 C14—C15 1.482 (3)
C5—C6 1.399 (3)
C7—N1—N2 118.18 (16) O1—C8—N2 125.65 (18)
N1—N2—C15 117.91 (15) O1—C8—C9 129.07 (18)
N1—N2—C8 130.24 (16) N2—C8—C9 105.28 (16)
C15—N2—C8 111.63 (15) C14—C9—C10 121.44 (19)
C2—C1—C6 122.02 (17) C14—C9—C8 108.96 (16)
C2—C1—Cl1 116.91 (15) C10—C9—C8 129.59 (19)
C6—C1—Cl1 121.07 (15) C11—C10—C9 117.2 (2)
C3—C2—C1 118.21 (18) C11—C10—H10A 121.4
C3—C2—H2A 120.9 C9—C10—H10A 121.4
C1—C2—H2A 120.9 C10—C11—C12 121.30 (19)
C2—C3—C4 121.86 (18) C10—C11—H11A 119.3
C2—C3—Cl2 117.88 (16) C12—C11—H11A 119.3
C4—C3—Cl2 120.26 (15) C11—C12—C13 121.2 (2)
C5—C4—C3 118.67 (18) C11—C12—H12A 119.4
C5—C4—H4A 120.7 C13—C12—H12A 119.4
C3—C4—H4A 120.7 C14—C13—C12 117.3 (2)
C4—C5—C6 121.77 (18) C14—C13—H13A 121.4
C4—C5—H5A 119.1 C12—C13—H13A 121.4
C6—C5—H5A 119.1 C13—C14—C9 121.60 (18)
C1—C6—C5 117.44 (17) C13—C14—C15 129.51 (18)
C1—C6—C7 120.55 (17) C9—C14—C15 108.90 (17)
C5—C6—C7 122.01 (18) O2—C15—N2 124.69 (17)
N1—C7—C6 119.80 (18) O2—C15—C14 130.08 (19)
N1—C7—H7A 120.1 N2—C15—C14 105.21 (15)
C6—C7—H7A 120.1
C7—N1—N2—C15 174.19 (18) N2—C8—C9—C14 1.7 (2)
C7—N1—N2—C8 −11.8 (3) O1—C8—C9—C10 1.8 (4)
C6—C1—C2—C3 0.6 (3) N2—C8—C9—C10 −178.9 (2)
Cl1—C1—C2—C3 −179.66 (16) C14—C9—C10—C11 0.3 (3)
C1—C2—C3—C4 1.0 (3) C8—C9—C10—C11 −179.0 (2)
C1—C2—C3—Cl2 −179.27 (16) C9—C10—C11—C12 0.1 (3)
C2—C3—C4—C5 −1.6 (3) C10—C11—C12—C13 −0.4 (4)
Cl2—C3—C4—C5 178.68 (17) C11—C12—C13—C14 0.2 (4)
C3—C4—C5—C6 0.6 (3) C12—C13—C14—C9 0.2 (3)
C2—C1—C6—C5 −1.5 (3) C12—C13—C14—C15 −179.5 (2)
Cl1—C1—C6—C5 178.73 (15) C10—C9—C14—C13 −0.5 (3)
C2—C1—C6—C7 177.96 (19) C8—C9—C14—C13 178.99 (19)
Cl1—C1—C6—C7 −1.8 (3) C10—C9—C14—C15 179.29 (19)
C4—C5—C6—C1 0.9 (3) C8—C9—C14—C15 −1.3 (2)
C4—C5—C6—C7 −178.58 (19) N1—N2—C15—O2 −5.7 (3)
N2—N1—C7—C6 178.49 (17) C8—N2—C15—O2 179.2 (2)
C1—C6—C7—N1 −174.55 (19) N1—N2—C15—C14 175.94 (16)
C5—C6—C7—N1 4.9 (3) C8—N2—C15—C14 0.8 (2)
N1—N2—C8—O1 3.4 (4) C13—C14—C15—O2 1.8 (4)
C15—N2—C8—O1 177.8 (2) C9—C14—C15—O2 −177.9 (2)
N1—N2—C8—C9 −175.91 (19) C13—C14—C15—N2 −180.0 (2)
C15—N2—C8—C9 −1.6 (2) C9—C14—C15—N2 0.3 (2)
O1—C8—C9—C14 −177.6 (2)

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.
D—H···A D—H H···A D···A D—H···A
C7—H7A···O1 0.93 2.18 2.857 (2) 129
C2—H2A···Cg1i 0.93 2.81 3.663 (2) 153

Symmetry codes: (i) −x+2, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2609).

References

  1. Bharti, S. K., Nath, G., Tilak, R. & Singh, S. K. (2010). Eur. J. Med. Chem. 45, 651–660. [DOI] [PubMed]
  2. Bhunora, S., Mugo, J., Bhaw-Luximon, A., Mapolie, S., Wyk, J. V., Darkwa, J. & Nordlander, E. (2011). Appl. Organomet. Chem. 25, 133–145.
  3. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Gupta, K. C. & Sutar, A. K. (2008). Coord. Chem. Rev. 252, 1420–1450.
  5. Hodnett, E. M. & Dunn, W. J. (1970). J. Med. Chem. 13, 768–770. [DOI] [PubMed]
  6. Liu, M. C., Lin, T. S. & Sartorelli, A. C. (1992). J. Med. Chem. 35, 3672–3677. [DOI] [PubMed]
  7. Mladenova, R., Ignatova, M., Manolova, N., Petrova, T. & Rashkov, I. (2002). Eur. Polym. J. 38, 989–999.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023063/rz2609sup1.cif

e-67-o1712-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023063/rz2609Isup2.hkl

e-67-o1712-Isup2.hkl (191.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811023063/rz2609Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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