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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):o1642. doi: 10.1107/S1600536811019246

6-Methyl-2,3,4,9-tetra­hydro-1H-carbazole-1-thione

R Archana a, K Prabakaran b, K J Rajendra Prasad b, A Thiruvalluvar a,*, R J Butcher c
PMCID: PMC3151814  PMID: 21837047

Abstract

In the title mol­ecule, C13H13NS, the dihedral angle between the benzene ring and the fused pyrrole ring is 0.71 (8)° and the cyclo­hexene ring is in an envelope form. The (CH2)3 atoms of the cyclo­hexene ring are disordered over two positions; the site-occupancy factor for the major component refined to 0.862 (4). In the crystal, inter­molecular N—H⋯S hydrogen bonds lead to the formation of centrosymmetric aggregates via an R 2 2(10) ring.

Related literature

For the synthesis of fused carbazole nuclei, see: Pelly et al. (2005). For heterocycle-annulated tetra-, penta- and hexa­cyclic carbazole derivatives, see: Chattopadhyay et al. (2006). For the preparation of 1-oxo compounds via their corresponding hydrazones, see: Rajendra Prasad & Vijayalakshmi (1994). For related structures, see: Archana et al. (2010); Thomas Gunaseelan et al. (2009). For hydrogen-bond motifs, see: Bernstein et al. (1995).graphic file with name e-67-o1642-scheme1.jpg

Experimental

Crystal data

  • C13H13NS

  • M r = 215.31

  • Triclinic, Inline graphic

  • a = 7.0846 (4) Å

  • b = 9.5287 (7) Å

  • c = 9.6384 (6) Å

  • α = 115.009 (7)°

  • β = 104.901 (6)°

  • γ = 98.074 (6)°

  • V = 546.28 (8) Å3

  • Z = 2

  • Cu Kα radiation

  • μ = 2.31 mm−1

  • T = 295 K

  • 0.46 × 0.28 × 0.21 mm

Data collection

  • Oxford Diffraction Xcalibur Ruby Gemini diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) T min = 0.609, T max = 1.000

  • 3471 measured reflections

  • 2102 independent reflections

  • 1924 reflections with I > 2σ(I)

  • R int = 0.022

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.133

  • S = 1.06

  • 2102 reflections

  • 145 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.33 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019246/tk2746sup1.cif

e-67-o1642-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019246/tk2746Isup2.hkl

e-67-o1642-Isup2.hkl (101.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019246/tk2746Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N9—H9⋯S1i 0.86 (2) 2.77 (3) 3.4955 (15) 143 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

RJB acknowledges the NSF MRI program (grant No. CHE-0619278) for funds to purchase an X-ray diffractometer.

supplementary crystallographic information

Comment

The development of methods for the synthesis of fused carbazole nuclei is becoming increasingly important as a result of the number of natural and synthetic carbazoles that display biological activity (Pelly et al., 2005). Heterocycle-annulated tetra-, penta- and hexa-cyclic carbazole derivatives have been developed using successive applications of three atom economic processes, viz., Claisen rearrangement, olefin metathesis and Diels-Alder reactions (Chattopadhyay et al., 2006). The preparation of 1-oxo compounds via their corresponding hydrazones has been reported (Rajendra Prasad & Vijayalakshmi, 1994). Archana et al. (2010) and Thomas Gunaseelan et al. (2009) have reported the crystal structures of substituted carbazole derivatives, in which the carbazole units are not planar.

In the title molecule, Fig. 1, the dihedral angle between the benzene ring and the fused pyrrole ring is 0.71 (8) °. The cyclohexene ring is in envelope form. Three C atoms (C2A, C3A, C4A) of the cyclohexene ring, with their attached H atoms are disordered over two positions; the site-occupancy factors are ca 0.86 and 0.14. Intermolecular N—H···S hydrogen bonds form a R22(10) (Bernstein et al., 1995) ring in the crystal structure (Table 1 & Fig. 2).

Experimental

A mixture of 6-methyl-2,3,4,9-tetrahydro-1H-carbazol-1-one (0.199 g, 0.001 mol) and Lawesson's reagent (0.404 g, 0.001 mol) was refluxed in pyridine on an oil bath pre-heated to 383 K for 6 h. The contents were poured onto cold water and neutralized using 1:1 HCl, filtered and dried. The product was recrystallized from ethanol. The yield was 0.154 g (72%).

Refinement

Atoms C2A, C3A, C4A of the cyclohexene ring, with attached hydrogen atoms are disordered over two positions; the site occupancy factors refined to 0.862 (4) and 0.138 (4). The N9-H atom was located in a difference Fourier map and refined freely. Other H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H = 0.93–0.97 Å and Uiso(H) = xUeq(parent atom), where x = 1.5 for methyl and 1.2 for all other carbon-bound H atoms. A damping factor (damp 200 15 in the final refinement cycles) was applied to avoid large and erratic displacements of the hydrogen atoms of the less occupied C atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom-numbering scheme and displacement ellipsoids drawn at the 30% probability level. H atoms are shown as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Unit cell contents for (I), viewed down the a axis, showing the formation of a R22(10) ring.

Crystal data

C13H13NS Z = 2
Mr = 215.31 F(000) = 228
Triclinic, P1 Dx = 1.309 Mg m3
Hall symbol: -P 1 Melting point: 356 K
a = 7.0846 (4) Å Cu Kα radiation, λ = 1.54184 Å
b = 9.5287 (7) Å Cell parameters from 2595 reflections
c = 9.6384 (6) Å θ = 5.3–72.6°
α = 115.009 (7)° µ = 2.31 mm1
β = 104.901 (6)° T = 295 K
γ = 98.074 (6)° Chunk, orange
V = 546.28 (8) Å3 0.46 × 0.28 × 0.21 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer 2102 independent reflections
Radiation source: Enhance (Cu) X-ray Source 1924 reflections with I > 2σ(I)
graphite Rint = 0.022
Detector resolution: 10.5081 pixels mm-1 θmax = 72.8°, θmin = 5.3°
ω scans h = −7→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) k = −11→11
Tmin = 0.609, Tmax = 1.000 l = −9→11
3471 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0834P)2 + 0.089P] where P = (Fo2 + 2Fc2)/3
2102 reflections (Δ/σ)max = 0.001
145 parameters Δρmax = 0.33 e Å3
3 restraints Δρmin = −0.22 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 1.12016 (7) 0.28362 (5) 0.07548 (6) 0.0567 (1)
N9 0.79545 (19) 0.08614 (14) 0.14611 (15) 0.0412 (3)
C1 0.9615 (3) 0.34787 (18) 0.16910 (19) 0.0438 (4)
C2A 0.9571 (3) 0.5227 (2) 0.2371 (3) 0.0611 (6) 0.862 (4)
C3A 0.7579 (4) 0.5495 (2) 0.2548 (3) 0.0590 (7) 0.862 (4)
C4A 0.6807 (3) 0.47256 (19) 0.3468 (2) 0.0531 (5) 0.862 (4)
C4C 0.6904 (3) 0.30147 (17) 0.27848 (18) 0.0421 (4)
C4D 0.5783 (2) 0.16637 (17) 0.27860 (17) 0.0396 (4)
C5 0.4231 (3) 0.14228 (19) 0.33927 (19) 0.0443 (4)
C6 0.3399 (2) −0.00860 (19) 0.31681 (18) 0.0430 (4)
C7 0.4130 (2) −0.13824 (18) 0.23121 (19) 0.0444 (4)
C8 0.5640 (2) −0.12039 (18) 0.16959 (19) 0.0426 (4)
C8A 0.6473 (2) 0.03337 (17) 0.19299 (17) 0.0382 (4)
C9A 0.8222 (2) 0.24863 (17) 0.19625 (18) 0.0406 (4)
C16 0.1720 (3) −0.0386 (2) 0.3790 (2) 0.0530 (5)
C4B 0.6807 (3) 0.47256 (19) 0.3468 (2) 0.0531 (5) 0.138 (4)
C3B 0.855 (2) 0.5809 (14) 0.3534 (18) 0.0590 (7) 0.138 (4)
C2B 0.9571 (3) 0.5227 (2) 0.2371 (3) 0.0611 (6) 0.138 (4)
H3A 0.65603 0.50556 0.14672 0.0708* 0.862 (4)
H2B 0.98737 0.56293 0.16579 0.0733* 0.862 (4)
H4B 0.54131 0.47484 0.33584 0.0637* 0.862 (4)
H3B 0.77491 0.66471 0.31193 0.0708* 0.862 (4)
H4A 0.76376 0.53281 0.46218 0.0637* 0.862 (4)
H8 0.60931 −0.20752 0.11426 0.0512*
H9 0.856 (3) 0.029 (3) 0.086 (2) 0.050 (5)*
H16A 0.14149 0.06091 0.43500 0.0795*
H16B 0.21516 −0.08010 0.45319 0.0795*
H16C 0.05241 −0.11568 0.28852 0.0795*
H5 0.37662 0.22852 0.39473 0.0531*
H7 0.35612 −0.24001 0.21612 0.0532*
H2A 1.06434 0.58601 0.34358 0.0733* 0.862 (4)
H2C 1.09697 0.59042 0.28888 0.0733* 0.138 (4)
H2D 0.89345 0.53906 0.14537 0.0733* 0.138 (4)
H3C 0.80970 0.66932 0.34463 0.0708* 0.138 (4)
H3D 0.95675 0.62673 0.46174 0.0708* 0.138 (4)
H4C 0.55597 0.47686 0.27954 0.0637* 0.138 (4)
H4D 0.67683 0.50937 0.45626 0.0637* 0.138 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0577 (2) 0.0544 (2) 0.0691 (3) 0.0166 (2) 0.0349 (2) 0.0319 (2)
N9 0.0486 (6) 0.0350 (6) 0.0475 (6) 0.0156 (5) 0.0246 (5) 0.0209 (5)
C1 0.0476 (8) 0.0392 (7) 0.0458 (7) 0.0084 (6) 0.0155 (6) 0.0232 (6)
C2A 0.0759 (11) 0.0386 (8) 0.0776 (11) 0.0143 (8) 0.0367 (9) 0.0307 (7)
C3A 0.0760 (14) 0.0372 (8) 0.0728 (13) 0.0214 (9) 0.0301 (11) 0.0304 (9)
C4A 0.0659 (10) 0.0342 (7) 0.0616 (9) 0.0190 (7) 0.0300 (8) 0.0194 (6)
C4C 0.0506 (8) 0.0340 (7) 0.0432 (7) 0.0125 (6) 0.0184 (6) 0.0187 (5)
C4D 0.0474 (7) 0.0338 (6) 0.0402 (6) 0.0132 (5) 0.0179 (6) 0.0180 (5)
C5 0.0517 (8) 0.0407 (7) 0.0453 (7) 0.0181 (6) 0.0239 (6) 0.0194 (6)
C6 0.0440 (7) 0.0451 (7) 0.0416 (7) 0.0113 (6) 0.0178 (6) 0.0211 (6)
C7 0.0493 (8) 0.0363 (7) 0.0497 (7) 0.0093 (6) 0.0188 (6) 0.0226 (6)
C8 0.0504 (8) 0.0342 (6) 0.0468 (7) 0.0147 (6) 0.0206 (6) 0.0197 (5)
C8A 0.0439 (7) 0.0347 (6) 0.0389 (6) 0.0132 (5) 0.0167 (5) 0.0183 (5)
C9A 0.0481 (8) 0.0339 (6) 0.0426 (7) 0.0119 (6) 0.0174 (6) 0.0200 (5)
C16 0.0521 (9) 0.0552 (9) 0.0545 (8) 0.0109 (7) 0.0256 (7) 0.0262 (7)
C4B 0.0659 (10) 0.0342 (7) 0.0616 (9) 0.0190 (7) 0.0300 (8) 0.0194 (6)
C3B 0.0760 (14) 0.0372 (8) 0.0728 (13) 0.0214 (9) 0.0301 (11) 0.0304 (9)
C2B 0.0759 (11) 0.0386 (8) 0.0776 (11) 0.0143 (8) 0.0367 (9) 0.0307 (7)

Geometric parameters (Å, °)

S1—C1 1.643 (2) C7—C8 1.374 (2)
N9—C8A 1.359 (2) C8—C8A 1.398 (3)
N9—C9A 1.380 (2) C2A—H2A 0.9700
N9—H9 0.86 (2) C2A—H2B 0.9700
C1—C9A 1.420 (3) C2B—H2C 0.9700
C1—C2B 1.519 (3) C2B—H2D 0.9700
C1—C2A 1.519 (3) C3A—H3A 0.9700
C2A—C3A 1.508 (4) C3A—H3B 0.9700
C2B—C3B 1.446 (15) C3B—H3C 0.9700
C3A—C4A 1.520 (3) C3B—H3D 0.9700
C3B—C4B 1.463 (15) C4A—H4A 0.9700
C4A—C4C 1.498 (3) C4A—H4B 0.9700
C4B—C4C 1.498 (3) C4B—H4D 0.9700
C4C—C4D 1.415 (3) C4B—H4C 0.9700
C4C—C9A 1.389 (3) C5—H5 0.9300
C4D—C5 1.406 (3) C7—H7 0.9300
C4D—C8A 1.422 (2) C8—H8 0.9300
C5—C6 1.376 (3) C16—H16C 0.9600
C6—C16 1.507 (3) C16—H16A 0.9600
C6—C7 1.419 (2) C16—H16B 0.9600
C8A—N9—C9A 108.73 (13) H2A—C2A—H2B 108.00
C8A—N9—H9 127.5 (19) C1—C2B—H2C 108.00
C9A—N9—H9 123.4 (19) C1—C2B—H2D 108.00
S1—C1—C2B 121.48 (16) C3B—C2B—H2C 108.00
C2A—C1—C9A 114.66 (17) C3B—C2B—H2D 108.00
C2B—C1—C9A 114.66 (17) H2C—C2B—H2D 107.00
S1—C1—C2A 121.48 (16) C2A—C3A—H3B 109.00
S1—C1—C9A 123.85 (14) C4A—C3A—H3A 109.00
C1—C2A—C3A 114.80 (19) C2A—C3A—H3A 109.00
C1—C2B—C3B 118.3 (6) H3A—C3A—H3B 108.00
C2A—C3A—C4A 113.5 (2) C4A—C3A—H3B 109.00
C2B—C3B—C4B 121.0 (10) C2B—C3B—H3D 107.00
C3A—C4A—C4C 109.36 (17) C2B—C3B—H3C 107.00
C3B—C4B—C4C 112.2 (6) C4B—C3B—H3D 107.00
C4B—C4C—C9A 122.29 (17) H3C—C3B—H3D 107.00
C4B—C4C—C4D 130.69 (18) C4B—C3B—H3C 107.00
C4A—C4C—C4D 130.69 (18) C3A—C4A—H4A 110.00
C4A—C4C—C9A 122.29 (17) C3A—C4A—H4B 110.00
C4D—C4C—C9A 107.01 (15) H4A—C4A—H4B 108.00
C4C—C4D—C5 134.04 (17) C4C—C4A—H4A 110.00
C4C—C4D—C8A 106.52 (14) C4C—C4A—H4B 110.00
C5—C4D—C8A 119.43 (16) C4C—C4B—H4D 109.00
C4D—C5—C6 120.16 (17) H4C—C4B—H4D 108.00
C7—C6—C16 119.78 (17) C3B—C4B—H4C 109.00
C5—C6—C16 121.41 (16) C3B—C4B—H4D 109.00
C5—C6—C7 118.81 (16) C4C—C4B—H4C 109.00
C6—C7—C8 123.03 (17) C4D—C5—H5 120.00
C7—C8—C8A 117.67 (15) C6—C5—H5 120.00
N9—C8A—C4D 108.52 (15) C6—C7—H7 119.00
N9—C8A—C8 130.59 (15) C8—C7—H7 118.00
C4D—C8A—C8 120.89 (14) C7—C8—H8 121.00
N9—C9A—C4C 109.22 (15) C8A—C8—H8 121.00
C1—C9A—C4C 124.73 (17) C6—C16—H16A 109.00
N9—C9A—C1 126.04 (15) C6—C16—H16B 109.00
C1—C2A—H2A 109.00 C6—C16—H16C 109.00
C1—C2A—H2B 109.00 H16A—C16—H16B 109.00
C3A—C2A—H2A 109.00 H16A—C16—H16C 109.00
C3A—C2A—H2B 109.00 H16B—C16—H16C 109.00
C9A—N9—C8A—C4D −1.01 (16) C4A—C4C—C9A—N9 −179.30 (14)
C9A—N9—C8A—C8 179.17 (15) C4A—C4C—C9A—C1 0.7 (3)
C8A—N9—C9A—C1 −179.28 (15) C4D—C4C—C9A—N9 −0.11 (17)
C8A—N9—C9A—C4C 0.70 (17) C4D—C4C—C9A—C1 179.87 (15)
S1—C1—C2A—C3A 155.86 (17) C4C—C4D—C5—C6 178.74 (17)
C9A—C1—C2A—C3A −25.3 (3) C8A—C4D—C5—C6 0.4 (2)
S1—C1—C9A—N9 −1.7 (2) C4C—C4D—C8A—N9 0.93 (17)
S1—C1—C9A—C4C 178.38 (13) C4C—C4D—C8A—C8 −179.22 (14)
C2A—C1—C9A—N9 179.56 (16) C5—C4D—C8A—N9 179.65 (14)
C2A—C1—C9A—C4C −0.4 (2) C5—C4D—C8A—C8 −0.5 (2)
C1—C2A—C3A—C4A 51.1 (3) C4D—C5—C6—C7 −0.3 (2)
C2A—C3A—C4A—C4C −48.2 (2) C4D—C5—C6—C16 −179.42 (15)
C3A—C4A—C4C—C4D −155.34 (19) C5—C6—C7—C8 0.2 (2)
C3A—C4A—C4C—C9A 23.7 (2) C16—C6—C7—C8 179.32 (15)
C4A—C4C—C4D—C5 0.2 (3) C6—C7—C8—C8A −0.2 (2)
C4A—C4C—C4D—C8A 178.61 (16) C7—C8—C8A—N9 −179.81 (15)
C9A—C4C—C4D—C5 −178.95 (17) C7—C8—C8A—C4D 0.4 (2)
C9A—C4C—C4D—C8A −0.50 (17)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N9—H9···S1i 0.86 (2) 2.77 (3) 3.4955 (15) 143 (2)

Symmetry codes: (i) −x+2, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2746).

References

  1. Archana, R., Yamuna, E., Rajendra Prasad, K. J., Thiruvalluvar, A. & Butcher, R. J. (2010). Acta Cryst. E66, o2299–o2300. [DOI] [PMC free article] [PubMed]
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  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Oxford Diffraction (2010). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
  6. Pelly, S. C., Parkinson, C. J., van Otterlo, W. A. L. & de Koning, C. B. (2005). J. Org. Chem. 70, 10474–10481. [DOI] [PubMed]
  7. Rajendra Prasad, K. J. & Vijayalakshmi, C. S. (1994). Indian J. Chem. Sect. B, 33, 481–482.
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  10. Thomas Gunaseelan, A., Prabakaran, K., Rajendra Prasad, K. J., Thiruvalluvar, A. & Butcher, R. J. (2009). Acta Cryst. E65, o1946–o1947. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019246/tk2746sup1.cif

e-67-o1642-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019246/tk2746Isup2.hkl

e-67-o1642-Isup2.hkl (101.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019246/tk2746Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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