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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):m899. doi: 10.1107/S1600536811021027

Poly[bis[μ-1,3-bis­(imidazol-1-ylmeth­yl)benzene-κ2 N 3:N 3′]bis­(nitrato-κO)cadmium]

Xi-Ying Hu a,*, Guang-Rui Yang a, Wen-Wen Shan a
PMCID: PMC3151839  PMID: 21836888

Abstract

A novel metal–organic framework based on 1,3-bis­(imidazol-1-ylmeth­yl)benzene (1,3-bimb), [Cd(NO3)2(C14H14N4)2]n, has been synthesized hydro­thermally. The structure exhibits a two-dimensional metal–organic (4,4)-net composed of CdII atoms and bimb ligands, and such layers are further joined through inter­layer C—H⋯O hydrogen bonds to generate a three-dimensional supra­molecular structure.

Related literature

For background to the network topologies and applications of coordination polymers, see: Maspoch et al. (2007); Ockwig et al. (2005); Zang et al. (2006); Zhang et al. (2009). For synthesis and related structures with the bimb ligand, see: Hoskins et al. (1997). For C—H⋯O hydrogen bonds, see: Desiraju (1996); Broder et al. (2002). graphic file with name e-67-0m899-scheme1.jpg

Experimental

Crystal data

  • [Cd(NO3)2(C14H14N4)2]

  • M r = 713.00

  • Monoclinic, Inline graphic

  • a = 8.4542 (8) Å

  • b = 19.3910 (18) Å

  • c = 9.2222 (8) Å

  • β = 102.415 (10)°

  • V = 1476.5 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.80 mm−1

  • T = 296 K

  • 0.21 × 0.20 × 0.19 mm

Data collection

  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.850, T max = 0.863

  • 5606 measured reflections

  • 2578 independent reflections

  • 2253 reflections with I > 2σ(I)

  • R int = 0.017

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.123

  • S = 1.06

  • 2578 reflections

  • 199 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 1.95 e Å−3

  • Δρmin = −0.86 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2010); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021027/hp2007sup1.cif

e-67-0m899-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021027/hp2007Isup2.hkl

e-67-0m899-Isup2.hkl (126.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3⋯O2i 0.93 2.71 3.525 (8) 147
C4—H4B⋯O1i 0.97 2.67 3.525 (6) 148
C4—H4B⋯O2i 0.97 2.83 3.633 (9) 141
C10—H10⋯O2i 0.93 2.63 3.506 (9) 158
C11—H11A⋯O1ii 0.97 2.70 3.518 (7) 142
C12—H12⋯O1ii 0.93 2.37 3.210 (6) 151

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported financially by the Natural Science Foundation of Henan Province (grant No. 2010A140009) and the Inter­national Technology Cooperation Project of the Science and Technology Department of Henan Province of China (grant No. 104300510044).

supplementary crystallographic information

Comment

Extensive research has been focused on the supramolecular coordination assemblies not only for their variety of architectures but also for the potential applications as functional materials (Maspoch et al., 2007; Ockwig et al., 2005). Many imidazole-containing ligands have been successfully employed in the generation of many interesting systems in possession of multidimensional networks and properties (Zang et al., 2006; Zhang et al., 2009). To further explore various factors that influence the formation of result structures in the assembly reactions, we undertake synthetic and structural studies on one novel CdII coordination polymers based on the highly flexible bidentate ligand 1,3-bis(imidazol-1-ylmethyl)-benzene (1,3-bimb): [Cd(bimb)2(NO3)2]n (1).

X-ray crystallographic analysis revealed that 1 crystallizes in monoclinic space group P21/c. As depicted in Fig. 1, the asymmetric unit consists of a half CdII atom, one bimb ligand and one nitrate ion. Each Cd ion is in a slightly elongated octahedral coordination environment and coordinated by four N atoms from different bimb ligands and two O atoms from two nitrate ions. Four N atoms comprise the equatorial plane, while two O atoms occupy the axial positions. Each bimb ligand acts as a µ2-bridge in trans-conformation with the dihedral angle of the two imidazole rings being ca 68.40 (16)°. Adjacent metal atoms are bridged by bimb ligands from two directions which are almost mutually perpendicular to form a (4,4)-net with the Cd···Cd distances of ca 14.2654 (10) Å (Fig. 2). The coordinated nitrate ions hang from the layer. Neighboring layers are arranged parallel with the uncoordinated O atoms closed to some H atoms from adjacent layer, and a number of interlayer C—H···O hydrogen bonds can be detected which contribute to the formation of the three-dimensional supromolecular structure, as shown in Fig. 3. The hydrogen-bonding geometry is listed in Table 1.

Experimental

1,3-bis(imidazol-1-ylmethyl)-benzene (bimb) was prepared according to the literature (Hoskins et al., 1997), all other starting materials were of analytical grade and obtained from commercial sources without further purification. Compound 1 was synthesized hydrothermally in a Teflon-lined stainless steel container by heating a mixture of 1,3-bis(imidazol-1-ylmethyl)-benzene (bimb) (0.0119 g, 0.05 mmol), Cd(NO3)2.4H2O (0.0154 g, 0.05 mmol) and KOH (0.0056 g, 0.1 mmol) in 7 ml of distilled water at 120°C for 3 d, and then cooled to room temperature. Colorless rectangular crystals of 1 were obtained in 79% yield based on Cd.

Refinement

H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93 Å, Uiso(H) = 1.2Ueq(C) for aromatic H, and C—H = 0.97 Å, Uiso(H) = 1.2Ueq(C) for CH2.

Figures

Fig. 1.

Fig. 1.

Metal coordination and atom labeling in title compound (thermal ellipsoids at 50% probability level). All H atoms are omitted for clarity.

Fig. 2.

Fig. 2.

A view of the layer structure in compound 1. Cd atoms are drawn as polyhedra.

Fig. 3.

Fig. 3.

The three-dimensional supramolecular structure connected by interlayer C—H···O hydrogen bonds. Dotted lines represent C—H···O bonds. Symmetry codes: #4 x + 1, y, z; #5 -x + 1, y - 1/2, -z + 1/2.

Crystal data

[Cd(NO3)2(C14H14N4)2] F(000) = 724
Mr = 713.00 Dx = 1.604 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3957 reflections
a = 8.4542 (8) Å θ = 3.1–29.1°
b = 19.3910 (18) Å µ = 0.80 mm1
c = 9.2222 (8) Å T = 296 K
β = 102.415 (10)° Needle, colourless
V = 1476.5 (2) Å3 0.21 × 0.20 × 0.19 mm
Z = 2

Data collection

Bruker SMART APEXII CCD area-detector diffractometer 2578 independent reflections
Radiation source: fine-focus sealed tube 2253 reflections with I > 2σ(I)
graphite Rint = 0.017
ω scans θmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −10→6
Tmin = 0.850, Tmax = 0.863 k = −21→23
5606 measured reflections l = −10→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0689P)2 + 2.589P] where P = (Fo2 + 2Fc2)/3
2578 reflections (Δ/σ)max < 0.001
199 parameters Δρmax = 1.95 e Å3
1 restraint Δρmin = −0.86 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cd1 0.5000 0.5000 0.0000 0.03330 (18)
O1 0.9948 (4) 0.4485 (2) 0.2556 (4) 0.0657 (10)
O2 0.8878 (9) 0.5415 (3) 0.1617 (11) 0.183 (4)
O3 0.7504 (4) 0.45152 (19) 0.1259 (4) 0.0626 (7)
N1 0.4529 (4) 0.55084 (17) 0.2160 (4) 0.0364 (7)
N2 0.3328 (4) 0.57252 (16) 0.4000 (3) 0.0322 (7)
N3 −0.2702 (4) 0.81383 (18) 0.3469 (4) 0.0401 (8)
N4 −0.4073 (4) 0.89430 (17) 0.4339 (4) 0.0379 (8)
N5 0.8818 (5) 0.4775 (3) 0.1699 (6) 0.0626 (7)
C1 0.5664 (5) 0.5731 (2) 0.3353 (5) 0.0419 (10)
H1 0.6763 0.5781 0.3374 0.050*
C2 0.4946 (5) 0.5868 (2) 0.4507 (5) 0.0463 (11)
H2 0.5446 0.6026 0.5446 0.056*
C3 0.3138 (5) 0.5521 (2) 0.2602 (4) 0.0342 (8)
H3 0.2145 0.5400 0.2002 0.041*
C4 0.2053 (6) 0.5788 (2) 0.4856 (5) 0.0414 (10)
H4A 0.2443 0.5598 0.5841 0.050*
H4B 0.1116 0.5521 0.4373 0.050*
C5 0.1556 (5) 0.6528 (2) 0.4988 (4) 0.0335 (8)
C6 0.2395 (5) 0.6941 (2) 0.6119 (5) 0.0436 (10)
H6 0.3224 0.6753 0.6839 0.052*
C7 0.2009 (5) 0.7630 (2) 0.6186 (5) 0.0469 (11)
H7 0.2587 0.7904 0.6947 0.056*
C8 0.0777 (6) 0.7914 (2) 0.5137 (5) 0.0440 (10)
H8 0.0538 0.8381 0.5178 0.053*
C9 −0.0113 (5) 0.7503 (2) 0.4012 (4) 0.0379 (9)
C10 0.0285 (5) 0.6813 (2) 0.3951 (4) 0.0348 (8)
H10 −0.0307 0.6535 0.3206 0.042*
C11 −0.1437 (6) 0.7816 (3) 0.2829 (5) 0.0509 (12)
H11A −0.0969 0.8160 0.2283 0.061*
H11B −0.1919 0.7459 0.2136 0.061*
C12 −0.2881 (5) 0.8817 (2) 0.3668 (5) 0.0410 (10)
H12 −0.2241 0.9155 0.3368 0.049*
C13 −0.4682 (5) 0.8310 (2) 0.4589 (5) 0.0430 (10)
H13 −0.5539 0.8236 0.5056 0.052*
C14 −0.3855 (5) 0.7810 (2) 0.4059 (5) 0.0469 (11)
H14 −0.4031 0.7337 0.4088 0.056*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd1 0.0367 (3) 0.0294 (3) 0.0390 (3) −0.00351 (15) 0.01983 (19) −0.00143 (16)
O1 0.0330 (16) 0.089 (3) 0.072 (2) 0.0071 (17) 0.0045 (16) 0.018 (2)
O2 0.124 (5) 0.077 (2) 0.302 (10) −0.021 (4) −0.058 (6) 0.044 (5)
O3 0.0348 (12) 0.0655 (16) 0.082 (2) −0.0069 (12) 0.0001 (13) 0.0074 (15)
N1 0.0393 (18) 0.0353 (17) 0.0387 (18) 0.0008 (15) 0.0175 (15) −0.0031 (15)
N2 0.0369 (17) 0.0287 (16) 0.0330 (17) 0.0082 (14) 0.0121 (14) 0.0015 (13)
N3 0.0437 (19) 0.0371 (18) 0.0404 (19) 0.0151 (16) 0.0112 (16) −0.0011 (15)
N4 0.0347 (17) 0.0343 (18) 0.049 (2) 0.0069 (14) 0.0172 (15) −0.0008 (15)
N5 0.0348 (12) 0.0655 (16) 0.082 (2) −0.0069 (12) 0.0001 (13) 0.0074 (15)
C1 0.031 (2) 0.040 (2) 0.056 (3) 0.0006 (18) 0.0114 (19) −0.007 (2)
C2 0.045 (3) 0.051 (3) 0.039 (2) 0.005 (2) 0.0020 (19) −0.013 (2)
C3 0.035 (2) 0.032 (2) 0.037 (2) 0.0019 (16) 0.0102 (16) 0.0000 (16)
C4 0.054 (3) 0.037 (2) 0.040 (2) 0.0109 (19) 0.025 (2) 0.0086 (18)
C5 0.037 (2) 0.037 (2) 0.032 (2) 0.0080 (17) 0.0188 (16) 0.0031 (16)
C6 0.039 (2) 0.060 (3) 0.033 (2) 0.011 (2) 0.0090 (18) −0.0037 (19)
C7 0.043 (2) 0.050 (3) 0.049 (3) −0.003 (2) 0.013 (2) −0.018 (2)
C8 0.049 (3) 0.033 (2) 0.056 (3) 0.0035 (19) 0.025 (2) −0.0064 (19)
C9 0.042 (2) 0.041 (2) 0.035 (2) 0.0125 (18) 0.0183 (18) −0.0013 (18)
C10 0.038 (2) 0.035 (2) 0.035 (2) 0.0029 (17) 0.0160 (17) −0.0055 (17)
C11 0.062 (3) 0.055 (3) 0.039 (2) 0.031 (2) 0.018 (2) −0.001 (2)
C12 0.042 (2) 0.033 (2) 0.054 (3) 0.0082 (18) 0.022 (2) 0.0057 (19)
C13 0.036 (2) 0.041 (2) 0.054 (3) 0.0010 (18) 0.0125 (19) 0.004 (2)
C14 0.047 (2) 0.033 (2) 0.057 (3) 0.0044 (19) 0.004 (2) 0.001 (2)

Geometric parameters (Å, °)

Cd1—N4i 2.322 (3) C2—H2 0.9300
Cd1—N4ii 2.322 (3) C3—H3 0.9300
Cd1—N1iii 2.332 (3) C4—C5 1.508 (5)
Cd1—N1 2.332 (3) C4—H4A 0.9700
Cd1—O3 2.378 (3) C4—H4B 0.9700
Cd1—O3iii 2.378 (3) C5—C6 1.384 (6)
O1—N5 1.236 (6) C5—C10 1.389 (6)
O2—N5 1.247 (8) C6—C7 1.379 (6)
O3—N5 1.207 (5) C6—H6 0.9300
N1—C3 1.326 (5) C7—C8 1.376 (7)
N1—C1 1.365 (5) C7—H7 0.9300
N2—C3 1.326 (5) C8—C9 1.394 (6)
N2—C2 1.375 (5) C8—H8 0.9300
N2—C4 1.472 (5) C9—C10 1.384 (6)
N3—C12 1.341 (5) C9—C11 1.512 (6)
N3—C14 1.371 (6) C10—H10 0.9300
N3—C11 1.468 (5) C11—H11A 0.9700
N4—C12 1.314 (5) C11—H11B 0.9700
N4—C13 1.369 (6) C12—H12 0.9300
N4—Cd1iv 2.322 (3) C13—C14 1.347 (6)
C1—C2 1.360 (6) C13—H13 0.9300
C1—H1 0.9300 C14—H14 0.9300
N4i—Cd1—N4ii 180.0 N2—C4—C5 111.8 (3)
N4i—Cd1—N1iii 91.13 (12) N2—C4—H4A 109.3
N4ii—Cd1—N1iii 88.87 (12) C5—C4—H4A 109.3
N4i—Cd1—N1 88.87 (12) N2—C4—H4B 109.3
N4ii—Cd1—N1 91.13 (12) C5—C4—H4B 109.3
N1iii—Cd1—N1 180.00 (15) H4A—C4—H4B 107.9
N4i—Cd1—O3 99.31 (12) C6—C5—C10 118.9 (4)
N4ii—Cd1—O3 80.69 (12) C6—C5—C4 120.4 (4)
N1iii—Cd1—O3 87.27 (13) C10—C5—C4 120.7 (4)
N1—Cd1—O3 92.73 (13) C7—C6—C5 120.5 (4)
N4i—Cd1—O3iii 80.69 (12) C7—C6—H6 119.8
N4ii—Cd1—O3iii 99.31 (12) C5—C6—H6 119.8
N1iii—Cd1—O3iii 92.73 (13) C8—C7—C6 120.5 (4)
N1—Cd1—O3iii 87.27 (13) C8—C7—H7 119.8
O3—Cd1—O3iii 180.0 C6—C7—H7 119.8
N5—O3—Cd1 131.1 (3) C7—C8—C9 120.0 (4)
C3—N1—C1 105.2 (3) C7—C8—H8 120.0
C3—N1—Cd1 126.6 (3) C9—C8—H8 120.0
C1—N1—Cd1 127.1 (3) C10—C9—C8 119.1 (4)
C3—N2—C2 107.2 (3) C10—C9—C11 120.5 (4)
C3—N2—C4 126.6 (4) C8—C9—C11 120.3 (4)
C2—N2—C4 126.2 (4) C9—C10—C5 121.0 (4)
C12—N3—C14 106.9 (3) C9—C10—H10 119.5
C12—N3—C11 125.9 (4) C5—C10—H10 119.5
C14—N3—C11 127.1 (4) N3—C11—C9 111.8 (3)
C12—N4—C13 105.4 (3) N3—C11—H11A 109.3
C12—N4—Cd1iv 128.7 (3) C9—C11—H11A 109.3
C13—N4—Cd1iv 125.9 (3) N3—C11—H11B 109.3
O3—N5—O1 123.7 (5) C9—C11—H11B 109.3
O3—N5—O2 116.2 (5) H11A—C11—H11B 107.9
O1—N5—O2 117.1 (5) N4—C12—N3 111.6 (4)
C2—C1—N1 109.8 (4) N4—C12—H12 124.2
C2—C1—H1 125.1 N3—C12—H12 124.2
N1—C1—H1 125.1 C14—C13—N4 109.9 (4)
C1—C2—N2 105.9 (4) C14—C13—H13 125.0
C1—C2—H2 127.1 N4—C13—H13 125.0
N2—C2—H2 127.1 C13—C14—N3 106.2 (4)
N1—C3—N2 112.0 (4) C13—C14—H14 126.9
N1—C3—H3 124.0 N3—C14—H14 126.9
N2—C3—H3 124.0
N4i—Cd1—O3—N5 13.2 (5) N2—C4—C5—C6 −86.3 (5)
N4ii—Cd1—O3—N5 −166.8 (5) N2—C4—C5—C10 91.6 (5)
N1iii—Cd1—O3—N5 103.9 (5) C10—C5—C6—C7 −2.1 (6)
N1—Cd1—O3—N5 −76.1 (5) C4—C5—C6—C7 175.8 (4)
N4i—Cd1—N1—C3 124.0 (3) C5—C6—C7—C8 0.5 (7)
N4ii—Cd1—N1—C3 −56.0 (3) C6—C7—C8—C9 1.3 (7)
O3—Cd1—N1—C3 −136.7 (3) C7—C8—C9—C10 −1.4 (6)
O3iii—Cd1—N1—C3 43.3 (3) C7—C8—C9—C11 −178.2 (4)
N4i—Cd1—N1—C1 −69.9 (3) C8—C9—C10—C5 −0.2 (6)
N4ii—Cd1—N1—C1 110.1 (3) C11—C9—C10—C5 176.6 (4)
O3—Cd1—N1—C1 29.4 (3) C6—C5—C10—C9 2.0 (6)
O3iii—Cd1—N1—C1 −150.6 (3) C4—C5—C10—C9 −175.9 (4)
Cd1—O3—N5—O1 167.3 (4) C12—N3—C11—C9 102.7 (5)
Cd1—O3—N5—O2 7.5 (9) C14—N3—C11—C9 −72.9 (6)
C3—N1—C1—C2 0.6 (5) C10—C9—C11—N3 123.7 (4)
Cd1—N1—C1—C2 −167.8 (3) C8—C9—C11—N3 −59.5 (6)
N1—C1—C2—N2 0.0 (5) C13—N4—C12—N3 0.3 (5)
C3—N2—C2—C1 −0.6 (5) Cd1iv—N4—C12—N3 −179.9 (3)
C4—N2—C2—C1 179.4 (4) C14—N3—C12—N4 −0.2 (5)
C1—N1—C3—N2 −1.0 (4) C11—N3—C12—N4 −176.6 (4)
Cd1—N1—C3—N2 167.5 (2) C12—N4—C13—C14 −0.3 (5)
C2—N2—C3—N1 1.0 (5) Cd1iv—N4—C13—C14 179.9 (3)
C4—N2—C3—N1 −178.9 (3) N4—C13—C14—N3 0.2 (5)
C3—N2—C4—C5 −102.7 (5) C12—N3—C14—C13 0.0 (5)
C2—N2—C4—C5 77.3 (5) C11—N3—C14—C13 176.3 (4)

Symmetry codes: (i) x+1, −y+3/2, z−1/2; (ii) −x, y−1/2, −z+1/2; (iii) −x+1, −y+1, −z; (iv) −x, y+1/2, −z+1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C3—H3···O2v 0.93 2.71 3.525 (8) 147.
C4—H4B···O1v 0.97 2.67 3.525 (6) 148.
C4—H4B···O2v 0.97 2.83 3.633 (9) 141.
C10—H10···O2v 0.93 2.63 3.506 (9) 158.
C11—H11A···O1vi 0.97 2.70 3.518 (7) 142.
C12—H12···O1vi 0.93 2.37 3.210 (6) 151.

Symmetry codes: (v) x−1, y, z; (vi) −x+1, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HP2007).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021027/hp2007sup1.cif

e-67-0m899-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021027/hp2007Isup2.hkl

e-67-0m899-Isup2.hkl (126.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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