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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):o1626. doi: 10.1107/S1600536811021398

Butane-1,2,3,4-tetra­carb­oxy­lic acid–1,10-phenanthroline–water (1/2/2)

Hong-lin Zhu a,*
PMCID: PMC3151845  PMID: 21837032

Abstract

The asymmetric unit of the title compound, 2C12H8N2·C8H10O8·2H2O, contains one 1,10-phenanthroline mol­ecule, one half-mol­ecule of butane-1,2,3,4-tetra­carb­oxy­lic acid (H4BTC) and a water mol­ecule, with the complete tetra-acid generated by crystallographic inversion symmetry. Inter­molecular O—H⋯O hydrogen bonds and π–π stacking inter­actions [centroid–centroid distances = 3.672 (2) and 3.708 (2) Å form an extensive three-dimensional network, which consolidates the crystal packing.

Related literature

For the use of H4BTC as a ligand in metal–organic coordination complexes, see: Delgado et al. (2007); Liu et al. (2008); Xu et al. (2010); Zhu et al. (2011). For co-crystals involving H4BTC, see: Cheng et al. (2009); Najafpour et al. (2008). For details of the Cambridge Structural Database, see: Allen (2002).graphic file with name e-67-o1626-scheme1.jpg

Experimental

Crystal data

  • 2C12H8N2·C8H10O8·2H2O

  • M r = 630.60

  • Triclinic, Inline graphic

  • a = 7.9472 (16) Å

  • b = 9.884 (2) Å

  • c = 10.628 (2) Å

  • α = 84.37 (3)°

  • β = 70.12 (3)°

  • γ = 72.72 (3)°

  • V = 749.7 (3) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 293 K

  • 0.58 × 0.34 × 0.10 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.950, T max = 0.990

  • 7400 measured reflections

  • 3396 independent reflections

  • 1960 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.188

  • S = 1.17

  • 3396 reflections

  • 208 parameters

  • H-atom parameters constrained

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021398/sj5157sup1.cif

e-67-o1626-sup1.cif (16.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021398/sj5157Isup2.hkl

e-67-o1626-Isup2.hkl (166.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯O5iii 0.87 1.70 2.565 (3) 172
O4—H4A⋯N2 0.86 1.90 2.723 (3) 159
O5—H5B⋯O2iv 0.88 1.98 2.817 (3) 160
O5—H5C⋯N1 0.85 2.09 2.858 (3) 149

Symmetry codes: (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

This project was supported by the K. C. Wong Magna Fund of Ningbo University.

supplementary crystallographic information

Comment

Systems with butane-1,2,3,4-tetracarboxylic acid (H4BTC) as a ligand have been widely studied (Delgado et al., 2007; Liu et al., 2008; Xu et al., 2010; Zhu et al., 2011). A search of the Cambridge structural database (version 5.32, May 2011) (Allen, 2002) showed that most of the literature dealing with butane-1,2,3,4-tetracarboxylic acid concentrated on metal-organic coordination complexes. In contrast, utilization of the butane-1,2,3,4-tetracarboxylic acid seems relatively limited in the construction of co-crystals (Cheng et al., 2009; Najafpour et al., 2008). In this paper, we report the structure of the title cocrystal.

The asymmetric unit of the title cocrystal consists of one 1,10-phenanthroline, unit one half molecule of butane-1,2,3,4-tetracarboxylic acid and a water molecule as depicted in Figure 1. The present 1,10-phenanthroline molecule preserves a nearly perfect coplanarity with a maximum deviation from the best fit meanplane 0.123 (1) Å. The carboxylato group with C1 and C4 atoms is gauche with the C1–C2–C3–C4 torsion angle being 63.35 (2)°. These values agree well with reported structures (Cheng et al., 2009; Najafpour et al., 2008;). The butane-1,2,3,4-tetracarboxylic acid molecules and water molecules are interlinked via O–H···O hydrogen bonds to generate a 1-dimensional supramolecular chain (Figure 2), which is further interconnected by interchain O–H···N hydrogen bonds to construct a 2-dimensional layer parallel to the (001) plane (Figure 3). The resulting layers are arranged in such a way that the 1,10-phenanthroline ligands are each sandwiched between two antiparallel phen neighbors from different adjacent layers, and the mean interplanar distances between the neighboring phen ligands are 3.67 Å and 3.71 Å, suggesting significant intermolecular face-to-face π–π stacking interactions. Such interlayer interactions are regarded as the driving forces to assemble the layers into a three-dimensional supramolecular architecture as shown in Figure 4.

Experimental

All chemicals were obtained from commerical sources and were used as obtained. 1,10-phenanthroline (0.1983 g, 1.00 mmol) was added to a stirred mixture solution of butane-1,2,3,4-tetracarboxylic acid (0.1173 g, 0.50 mmol) in 10 ml H2O and 10 ml me thanol, and the resulting mixture was stirred for 30 min. Colorless crystals were obtained from the solution after standing at room temperature for two months.

Refinement

H atoms bonded to C atoms were placed in geometrically calculated positions and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). H atoms attached to O atoms were found in a difference Fourier synthesis and were refined using a riding model, with the O–H distances fixed as initially found and with Uiso(H) values set at 1.2 Ueq(O).

Figures

Fig. 1.

Fig. 1.

The content of asymmetric unit showing the atomic numbering and 45% probability displacement ellipsoids [Symmetry codes: (i) -x, -y + 1, -z + 1].

Fig. 2.

Fig. 2.

Supramolecular assembly of a one-dimensional chain via O–H···O hydrogen bonds.

Fig. 3.

Fig. 3.

Supramolecular assembly of a two-dimensional layer via O–H···N hydrogen bonds.

Fig. 4.

Fig. 4.

Supramolecular assembly of three-dimensional architecture through π–π stacking interactions.

Crystal data

2C12H8N2·C8H10O8·2H2O Z = 1
Mr = 630.60 F(000) = 330
Triclinic, P1 Dx = 1.397 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.9472 (16) Å Cell parameters from 4546 reflections
b = 9.884 (2) Å θ = 3.1–27.5°
c = 10.628 (2) Å µ = 0.11 mm1
α = 84.37 (3)° T = 293 K
β = 70.12 (3)° Block, colorless
γ = 72.72 (3)° 0.58 × 0.34 × 0.10 mm
V = 749.7 (3) Å3

Data collection

Rigaku R-AXIS RAPID diffractometer 3396 independent reflections
Radiation source: fine-focus sealed tube 1960 reflections with I > 2σ(I)
graphite Rint = 0.024
ω scans θmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −10→10
Tmin = 0.950, Tmax = 0.990 k = −12→12
7400 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188 H-atom parameters constrained
S = 1.17 w = 1/[σ2(Fo2) + (0.0607P)2 + 0.4694P] where P = (Fo2 + 2Fc2)/3
3396 reflections (Δ/σ)max < 0.001
208 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.34 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 −0.5184 (3) 0.7050 (2) 0.4404 (3) 0.0745 (7)
H1A −0.5899 0.7919 0.4447 0.089*
O2 −0.3498 (3) 0.8187 (2) 0.4902 (3) 0.0734 (7)
C1 −0.3757 (4) 0.7102 (3) 0.4718 (3) 0.0434 (6)
C2 −0.2475 (4) 0.5669 (3) 0.4825 (3) 0.0484 (6)
H2A −0.2240 0.5103 0.4055 0.058*
H2B −0.3086 0.5200 0.5619 0.058*
C3 −0.0619 (3) 0.5737 (2) 0.4898 (2) 0.0389 (5)
H3A −0.0862 0.6351 0.5647 0.047*
C4 0.0425 (4) 0.6356 (2) 0.3614 (2) 0.0408 (5)
O3 0.0605 (3) 0.5952 (2) 0.25216 (19) 0.0652 (6)
O4 0.1121 (3) 0.73303 (19) 0.37990 (18) 0.0532 (5)
H4A 0.1639 0.7706 0.3054 0.064*
N1 0.0963 (3) 1.0528 (2) 0.2323 (2) 0.0514 (6)
C5 −0.0353 (5) 1.1744 (3) 0.2717 (3) 0.0613 (8)
H5A −0.0890 1.1934 0.3629 0.074*
C6 −0.0969 (5) 1.2746 (3) 0.1844 (4) 0.0705 (9)
H6A −0.1915 1.3571 0.2170 0.085*
C7 −0.0175 (5) 1.2505 (3) 0.0505 (3) 0.0677 (9)
H7A −0.0565 1.3168 −0.0096 0.081*
C8 0.1230 (4) 1.1255 (3) 0.0040 (3) 0.0546 (7)
C9 0.2172 (5) 1.0959 (4) −0.1356 (3) 0.0696 (9)
H9A 0.1810 1.1599 −0.1982 0.084*
C10 0.3561 (6) 0.9781 (4) −0.1774 (3) 0.0734 (10)
H10A 0.4185 0.9633 −0.2687 0.088*
C11 0.4106 (4) 0.8744 (3) −0.0853 (3) 0.0571 (7)
C12 0.5552 (5) 0.7492 (4) −0.1252 (4) 0.0746 (10)
H12A 0.6236 0.7328 −0.2154 0.089*
C13 0.5961 (5) 0.6515 (4) −0.0328 (4) 0.0777 (10)
H13A 0.6935 0.5690 −0.0586 0.093*
C14 0.4888 (5) 0.6777 (3) 0.1014 (4) 0.0709 (9)
H14A 0.5149 0.6093 0.1639 0.085*
C15 0.3153 (4) 0.8952 (3) 0.0537 (3) 0.0466 (6)
C16 0.1741 (4) 1.0267 (3) 0.0985 (2) 0.0449 (6)
N2 0.3519 (3) 0.7946 (2) 0.1444 (2) 0.0552 (6)
O5 0.2570 (3) 0.9523 (2) 0.4390 (2) 0.0597 (6)
H5B 0.2932 1.0275 0.4404 0.072*
H5C 0.1736 0.9754 0.4011 0.072*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0631 (13) 0.0483 (11) 0.131 (2) −0.0092 (10) −0.0622 (14) 0.0059 (12)
O2 0.0697 (14) 0.0409 (11) 0.124 (2) −0.0077 (10) −0.0544 (14) −0.0078 (11)
C1 0.0420 (13) 0.0434 (13) 0.0460 (14) −0.0107 (11) −0.0188 (11) 0.0070 (11)
C2 0.0450 (14) 0.0369 (12) 0.0677 (17) −0.0104 (11) −0.0269 (13) 0.0080 (12)
C3 0.0394 (12) 0.0340 (11) 0.0442 (13) −0.0094 (10) −0.0166 (10) 0.0046 (10)
C4 0.0475 (14) 0.0363 (12) 0.0392 (13) −0.0102 (10) −0.0178 (11) 0.0053 (10)
O3 0.0941 (17) 0.0659 (13) 0.0441 (11) −0.0352 (12) −0.0239 (11) 0.0055 (9)
O4 0.0683 (13) 0.0509 (11) 0.0502 (11) −0.0332 (10) −0.0205 (9) 0.0110 (8)
N1 0.0597 (14) 0.0524 (13) 0.0431 (12) −0.0176 (11) −0.0171 (11) 0.0022 (10)
C5 0.068 (2) 0.0575 (17) 0.0536 (17) −0.0092 (15) −0.0186 (15) −0.0078 (14)
C6 0.077 (2) 0.0546 (17) 0.080 (2) −0.0035 (16) −0.0384 (19) −0.0002 (16)
C7 0.082 (2) 0.0611 (19) 0.070 (2) −0.0191 (17) −0.0424 (19) 0.0141 (16)
C8 0.0687 (18) 0.0576 (16) 0.0503 (16) −0.0299 (15) −0.0282 (14) 0.0125 (13)
C9 0.093 (3) 0.083 (2) 0.0443 (16) −0.041 (2) −0.0266 (17) 0.0164 (16)
C10 0.091 (3) 0.096 (3) 0.0380 (15) −0.048 (2) −0.0102 (16) 0.0071 (17)
C11 0.0575 (17) 0.0677 (18) 0.0488 (16) −0.0326 (15) −0.0060 (13) −0.0067 (14)
C12 0.066 (2) 0.086 (2) 0.066 (2) −0.0365 (19) 0.0029 (17) −0.0179 (19)
C13 0.058 (2) 0.064 (2) 0.098 (3) −0.0149 (16) −0.0048 (19) −0.025 (2)
C14 0.068 (2) 0.0519 (17) 0.082 (2) −0.0128 (15) −0.0131 (18) −0.0047 (16)
C15 0.0533 (15) 0.0488 (14) 0.0434 (14) −0.0281 (12) −0.0121 (12) 0.0034 (11)
C16 0.0548 (15) 0.0496 (14) 0.0382 (13) −0.0246 (12) −0.0179 (11) 0.0054 (11)
N2 0.0594 (15) 0.0461 (12) 0.0576 (14) −0.0170 (11) −0.0144 (12) 0.0017 (11)
O5 0.0634 (13) 0.0495 (11) 0.0780 (14) −0.0128 (9) −0.0418 (11) 0.0047 (10)

Geometric parameters (Å, °)

O1—C1 1.302 (3) C7—H7A 0.9300
O1—H1A 0.8734 C8—C16 1.406 (4)
O2—C1 1.196 (3) C8—C9 1.431 (4)
C1—C2 1.499 (3) C9—C10 1.333 (5)
C2—C3 1.525 (3) C9—H9A 0.9300
C2—H2A 0.9700 C10—C11 1.423 (5)
C2—H2B 0.9700 C10—H10A 0.9300
C3—C4 1.514 (3) C11—C12 1.399 (5)
C3—C3i 1.540 (4) C11—C15 1.416 (4)
C3—H3A 0.9800 C12—C13 1.359 (5)
C4—O3 1.214 (3) C12—H12A 0.9300
C4—O4 1.303 (3) C13—C14 1.393 (5)
O4—H4A 0.8635 C13—H13A 0.9300
N1—C5 1.330 (4) C14—N2 1.321 (4)
N1—C16 1.361 (3) C14—H14A 0.9300
C5—C6 1.387 (4) C15—N2 1.354 (4)
C5—H5A 0.9300 C15—C16 1.438 (4)
C6—C7 1.359 (5) O5—H5B 0.8756
C6—H6A 0.9300 O5—H5C 0.8533
C7—C8 1.393 (4)
Cg1···Cg3ii 3.672 (2) Cg2···Cg3iii 3.708 (2)
C1—O1—H1A 106.5 C7—C8—C16 118.4 (3)
O2—C1—O1 123.2 (2) C7—C8—C9 122.2 (3)
O2—C1—C2 123.5 (2) C16—C8—C9 119.4 (3)
O1—C1—C2 113.4 (2) C10—C9—C8 121.1 (3)
C1—C2—C3 112.9 (2) C10—C9—H9A 119.5
C1—C2—H2A 109.0 C8—C9—H9A 119.5
C3—C2—H2A 109.0 C9—C10—C11 121.3 (3)
C1—C2—H2B 109.0 C9—C10—H10A 119.4
C3—C2—H2B 109.0 C11—C10—H10A 119.4
H2A—C2—H2B 107.8 C12—C11—C15 117.1 (3)
C4—C3—C2 109.7 (2) C12—C11—C10 123.0 (3)
C4—C3—C3i 108.5 (2) C15—C11—C10 119.8 (3)
C2—C3—C3i 112.0 (2) C13—C12—C11 120.3 (3)
C4—C3—H3A 108.9 C13—C12—H12A 119.8
C2—C3—H3A 108.9 C11—C12—H12A 119.8
C3i—C3—H3A 108.9 C12—C13—C14 118.6 (3)
O3—C4—O4 124.0 (2) C12—C13—H13A 120.7
O3—C4—C3 122.1 (2) C14—C13—H13A 120.7
O4—C4—C3 113.9 (2) N2—C14—C13 123.5 (4)
C4—O4—H4A 111.9 N2—C14—H14A 118.2
C5—N1—C16 117.5 (2) C13—C14—H14A 118.2
N1—C5—C6 123.7 (3) N2—C15—C11 122.0 (3)
N1—C5—H5A 118.1 N2—C15—C16 119.6 (2)
C6—C5—H5A 118.1 C11—C15—C16 118.5 (3)
C7—C6—C5 119.1 (3) N1—C16—C8 121.9 (3)
C7—C6—H6A 120.4 N1—C16—C15 118.4 (2)
C5—C6—H6A 120.4 C8—C16—C15 119.7 (2)
C6—C7—C8 119.4 (3) C14—N2—C15 118.3 (3)
C6—C7—H7A 120.3 H5B—O5—H5C 107.6
C8—C7—H7A 120.3

Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y+2, −z; (iii) −x+1, −y+2, −z.

Hydrogen-bond geometry (Å, °)

Cg1, Cg2 and Cg3 are the centroids of the N1/C5-C8/C16/, N2/C14-C11/C15, and C8-C11/C15/C16, rings respectively.
D—H···A D—H H···A D···A D—H···A
O1—H1A···O5iv 0.87 1.70 2.565 (3) 172
O4—H4A···N2 0.86 1.90 2.723 (3) 159
O5—H5B···O2v 0.88 1.98 2.817 (3) 160
O5—H5C···N1 0.85 2.09 2.858 (3) 149

Symmetry codes: (iv) x−1, y, z; (v) −x, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ5157).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021398/sj5157sup1.cif

e-67-o1626-sup1.cif (16.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021398/sj5157Isup2.hkl

e-67-o1626-Isup2.hkl (166.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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