Abstract
In the title compound, C13H9Cl2NO, the dihedral angle between the benzene rings is 54.22 (10)°. In the crystal, molecules are linked by O—H⋯N intermolecular hydrogen bonds, forming a zigzag C(7) chain along the a axis.
Related literature
For the biological properties of Schiff base ligands, see: Bedia et al. (2006 ▶). For related structures, see: Fun et al. (2008 ▶); Alhadi et al. (2008 ▶); Nie (2008 ▶). For reference bond-length values, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C13H9Cl2NO
M r = 266.11
Orthorhombic,
a = 6.049 (4) Å
b = 10.038 (6) Å
c = 19.645 (12) Å
V = 1192.8 (13) Å3
Z = 4
Mo Kα radiation
μ = 0.52 mm−1
T = 296 K
0.25 × 0.23 × 0.21 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.880, T max = 0.898
4853 measured reflections
2184 independent reflections
1998 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.030
wR(F 2) = 0.072
S = 1.17
2184 reflections
156 parameters
H-atom parameters constrained
Δρmax = 0.15 e Å−3
Δρmin = −0.14 e Å−3
Absolute structure: Flack (1983 ▶), 869 Friedel pairs
Flack parameter: 0.04 (6)
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019933/hb5895sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019933/hb5895Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811019933/hb5895Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N1i | 0.82 | 1.99 | 2.811 (3) | 174 |
Symmetry code: (i)
.
Acknowledgments
This project was supported by the Zhejiang Provincial Natural Science Foundation of China (grant No. Y4110290).
supplementary crystallographic information
Comment
Schiff base ligands have received considerable attention during the last decades, mainly because of their structures or for their biological properties (Bedia et al., 2006). We report here the crystal structure of the title new Schiff base compound, (I). In (I) (Fig. 1), the bond lengths and angles are normal and comparable to the values observed in similar compounds (Nie et al., 2008; Fun et al., 2008; Alhadi et al., 2008). The dihedral angle between the two aromatic rings in the Schiff base molecule is 54.22 (10) °, indicating that two these rings are not coplanar. Intermolecular O—H···N hydrogen bonds (Table 1) link the molecules along a axis (Fig. 2).
Experimental
A mixture of 2,3-dichlorobenzaldehyde (5 mmol), 4-aminophenol (5 mmol) and methanol (40 ml) was refluxed for 2 h. It was then allowed to cool and filtered. Recrystallization of the crude product from methanol yielded yellow blocks of (I).
Refinement
H atoms were positioned geometrically and refined using the riding-model approximation, with C—H = 0.93–0.97 Å, O—H = 0.82 Å, and Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(O).
Figures
Fig. 1.
The molecular structure of the title compounds with 50% probability displacement ellipsoids for non-hydrogen atoms.
Fig. 2.
Molecular packing of the title compound, viewed along the a axis. Hydrogen bonds are shown as dashed lines.
Crystal data
| C13H9Cl2NO | F(000) = 544 |
| Mr = 266.11 | Dx = 1.482 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 2869 reflections |
| a = 6.049 (4) Å | θ = 2.3–27.2° |
| b = 10.038 (6) Å | µ = 0.52 mm−1 |
| c = 19.645 (12) Å | T = 296 K |
| V = 1192.8 (13) Å3 | Block, yellow |
| Z = 4 | 0.25 × 0.23 × 0.21 mm |
Data collection
| Bruker APEXII CCD diffractometer | 2184 independent reflections |
| Radiation source: fine-focus sealed tube | 1998 reflections with I > 2σ(I) |
| graphite | Rint = 0.037 |
| φ and ω scans | θmax = 25.5°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −7→7 |
| Tmin = 0.880, Tmax = 0.898 | k = −8→12 |
| 4853 measured reflections | l = −23→21 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.030 | w = 1/[σ2(Fo2) + (0.0269P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.072 | (Δ/σ)max < 0.001 |
| S = 1.17 | Δρmax = 0.15 e Å−3 |
| 2184 reflections | Δρmin = −0.14 e Å−3 |
| 156 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.073 (4) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 869 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.04 (6) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.6782 (4) | 0.13161 (18) | 0.30064 (9) | 0.0315 (5) | |
| C2 | 0.8717 (4) | 0.2032 (2) | 0.29247 (10) | 0.0380 (5) | |
| H2 | 0.9883 | 0.1903 | 0.3226 | 0.046* | |
| C3 | 0.8932 (4) | 0.2937 (2) | 0.23991 (10) | 0.0353 (5) | |
| H3 | 1.0241 | 0.3413 | 0.2347 | 0.042* | |
| C4 | 0.7192 (3) | 0.31355 (18) | 0.19496 (10) | 0.0305 (5) | |
| C5 | 0.5261 (4) | 0.2441 (2) | 0.20450 (11) | 0.0389 (5) | |
| H5 | 0.4074 | 0.2593 | 0.1754 | 0.047* | |
| C6 | 0.5046 (4) | 0.1522 (2) | 0.25642 (11) | 0.0380 (5) | |
| H6 | 0.3739 | 0.1045 | 0.2615 | 0.046* | |
| C7 | 0.9040 (4) | 0.3995 (2) | 0.10174 (10) | 0.0305 (5) | |
| H7 | 1.0160 | 0.3406 | 0.1138 | 0.037* | |
| C8 | 0.9356 (3) | 0.48183 (19) | 0.04113 (10) | 0.0302 (5) | |
| C9 | 0.7862 (4) | 0.5815 (2) | 0.02412 (11) | 0.0404 (5) | |
| H9 | 0.6685 | 0.5997 | 0.0531 | 0.049* | |
| C10 | 0.8097 (4) | 0.6539 (2) | −0.03507 (13) | 0.0528 (6) | |
| H10 | 0.7081 | 0.7203 | −0.0457 | 0.063* | |
| C11 | 0.9837 (5) | 0.6281 (2) | −0.07860 (12) | 0.0502 (6) | |
| H11 | 0.9987 | 0.6761 | −0.1188 | 0.060* | |
| C12 | 1.1338 (4) | 0.5315 (2) | −0.06226 (10) | 0.0392 (5) | |
| C13 | 1.1149 (4) | 0.45927 (17) | −0.00259 (10) | 0.0317 (5) | |
| Cl1 | 1.35264 (12) | 0.50375 (7) | −0.11774 (3) | 0.0628 (2) | |
| Cl2 | 1.31056 (9) | 0.33967 (5) | 0.01639 (3) | 0.04412 (18) | |
| N1 | 0.7322 (3) | 0.40395 (17) | 0.13882 (8) | 0.0321 (4) | |
| O1 | 0.6681 (3) | 0.04560 (15) | 0.35434 (8) | 0.0447 (4) | |
| H1 | 0.5510 | 0.0045 | 0.3531 | 0.067* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0295 (12) | 0.0359 (10) | 0.0290 (10) | −0.0003 (9) | 0.0016 (9) | 0.0003 (8) |
| C2 | 0.0288 (12) | 0.0525 (12) | 0.0326 (11) | −0.0050 (10) | −0.0052 (9) | 0.0053 (9) |
| C3 | 0.0249 (12) | 0.0454 (12) | 0.0355 (11) | −0.0058 (10) | 0.0016 (9) | 0.0011 (9) |
| C4 | 0.0271 (12) | 0.0343 (10) | 0.0302 (10) | 0.0027 (9) | 0.0046 (8) | 0.0020 (8) |
| C5 | 0.0230 (12) | 0.0556 (14) | 0.0382 (12) | 0.0002 (10) | −0.0027 (10) | 0.0068 (10) |
| C6 | 0.0241 (11) | 0.0480 (12) | 0.0419 (12) | −0.0102 (11) | 0.0010 (9) | 0.0070 (10) |
| C7 | 0.0270 (11) | 0.0325 (10) | 0.0319 (11) | 0.0014 (9) | −0.0015 (9) | 0.0009 (8) |
| C8 | 0.0271 (11) | 0.0311 (10) | 0.0323 (10) | −0.0043 (9) | −0.0019 (8) | −0.0004 (8) |
| C9 | 0.0368 (13) | 0.0421 (11) | 0.0424 (12) | 0.0024 (10) | 0.0006 (11) | 0.0075 (10) |
| C10 | 0.0516 (16) | 0.0468 (13) | 0.0601 (15) | 0.0043 (13) | −0.0085 (13) | 0.0184 (12) |
| C11 | 0.0582 (17) | 0.0521 (14) | 0.0403 (13) | −0.0114 (13) | −0.0060 (12) | 0.0166 (11) |
| C12 | 0.0396 (14) | 0.0467 (12) | 0.0312 (11) | −0.0145 (11) | 0.0007 (10) | −0.0038 (9) |
| C13 | 0.0323 (12) | 0.0321 (10) | 0.0309 (11) | −0.0072 (8) | −0.0015 (9) | −0.0021 (8) |
| Cl1 | 0.0631 (5) | 0.0830 (5) | 0.0424 (4) | −0.0188 (4) | 0.0200 (3) | −0.0021 (3) |
| Cl2 | 0.0381 (3) | 0.0505 (3) | 0.0437 (3) | 0.0092 (3) | 0.0070 (3) | −0.0034 (2) |
| N1 | 0.0269 (10) | 0.0360 (9) | 0.0334 (9) | 0.0021 (7) | 0.0006 (8) | 0.0007 (7) |
| O1 | 0.0372 (10) | 0.0563 (9) | 0.0407 (8) | −0.0109 (8) | −0.0033 (7) | 0.0166 (7) |
Geometric parameters (Å, °)
| C1—O1 | 1.365 (2) | C7—H7 | 0.9300 |
| C1—C6 | 1.379 (3) | C8—C9 | 1.390 (3) |
| C1—C2 | 1.382 (3) | C8—C13 | 1.402 (3) |
| C2—C3 | 1.382 (3) | C9—C10 | 1.378 (3) |
| C2—H2 | 0.9300 | C9—H9 | 0.9300 |
| C3—C4 | 1.388 (3) | C10—C11 | 1.381 (4) |
| C3—H3 | 0.9300 | C10—H10 | 0.9300 |
| C4—C5 | 1.373 (3) | C11—C12 | 1.366 (3) |
| C4—N1 | 1.430 (2) | C11—H11 | 0.9300 |
| C5—C6 | 1.381 (3) | C12—C13 | 1.383 (3) |
| C5—H5 | 0.9300 | C12—Cl1 | 1.737 (2) |
| C6—H6 | 0.9300 | C13—Cl2 | 1.727 (2) |
| C7—N1 | 1.270 (3) | O1—H1 | 0.8200 |
| C7—C8 | 1.462 (3) | ||
| O1—C1—C6 | 123.22 (19) | C9—C8—C13 | 118.18 (19) |
| O1—C1—C2 | 117.18 (18) | C9—C8—C7 | 121.20 (19) |
| C6—C1—C2 | 119.58 (18) | C13—C8—C7 | 120.60 (18) |
| C3—C2—C1 | 120.57 (19) | C10—C9—C8 | 121.0 (2) |
| C3—C2—H2 | 119.7 | C10—C9—H9 | 119.5 |
| C1—C2—H2 | 119.7 | C8—C9—H9 | 119.5 |
| C2—C3—C4 | 119.86 (19) | C9—C10—C11 | 120.1 (2) |
| C2—C3—H3 | 120.1 | C9—C10—H10 | 119.9 |
| C4—C3—H3 | 120.1 | C11—C10—H10 | 119.9 |
| C5—C4—C3 | 119.06 (18) | C12—C11—C10 | 119.6 (2) |
| C5—C4—N1 | 118.29 (18) | C12—C11—H11 | 120.2 |
| C3—C4—N1 | 122.66 (17) | C10—C11—H11 | 120.2 |
| C4—C5—C6 | 121.3 (2) | C11—C12—C13 | 121.1 (2) |
| C4—C5—H5 | 119.3 | C11—C12—Cl1 | 118.21 (17) |
| C6—C5—H5 | 119.3 | C13—C12—Cl1 | 120.71 (18) |
| C1—C6—C5 | 119.6 (2) | C12—C13—C8 | 119.9 (2) |
| C1—C6—H6 | 120.2 | C12—C13—Cl2 | 119.40 (17) |
| C5—C6—H6 | 120.2 | C8—C13—Cl2 | 120.68 (15) |
| N1—C7—C8 | 123.66 (19) | C7—N1—C4 | 117.70 (17) |
| N1—C7—H7 | 118.2 | C1—O1—H1 | 109.5 |
| C8—C7—H7 | 118.2 | ||
| O1—C1—C2—C3 | −179.00 (19) | C9—C10—C11—C12 | −0.8 (4) |
| C6—C1—C2—C3 | −0.8 (3) | C10—C11—C12—C13 | −0.2 (3) |
| C1—C2—C3—C4 | 0.2 (3) | C10—C11—C12—Cl1 | −179.07 (19) |
| C2—C3—C4—C5 | 1.3 (3) | C11—C12—C13—C8 | 2.0 (3) |
| C2—C3—C4—N1 | −178.85 (18) | Cl1—C12—C13—C8 | −179.16 (15) |
| C3—C4—C5—C6 | −2.1 (3) | C11—C12—C13—Cl2 | −179.20 (17) |
| N1—C4—C5—C6 | 177.97 (19) | Cl1—C12—C13—Cl2 | −0.4 (2) |
| O1—C1—C6—C5 | 178.0 (2) | C9—C8—C13—C12 | −2.8 (3) |
| C2—C1—C6—C5 | 0.0 (3) | C7—C8—C13—C12 | 175.34 (18) |
| C4—C5—C6—C1 | 1.5 (3) | C9—C8—C13—Cl2 | 178.46 (15) |
| N1—C7—C8—C9 | 6.8 (3) | C7—C8—C13—Cl2 | −3.4 (3) |
| N1—C7—C8—C13 | −171.26 (19) | C8—C7—N1—C4 | 177.33 (18) |
| C13—C8—C9—C10 | 1.8 (3) | C5—C4—N1—C7 | −133.5 (2) |
| C7—C8—C9—C10 | −176.3 (2) | C3—C4—N1—C7 | 46.7 (3) |
| C8—C9—C10—C11 | −0.1 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N1i | 0.82 | 1.99 | 2.811 (3) | 174 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5895).
References
- Alhadi, A. A., Ali, H. M., Puvaneswary, S., Robinson, W. T. & Ng, S. W. (2008). Acta Cryst. E64, o1584. [DOI] [PMC free article] [PubMed]
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bedia, K. K., Elcin, O., Seda, U., Fatma, K., Nathaly, S., Sevim, R. & Dimoglo, A. (2006). Eur. J. Med. Chem. 41, 1253–1261. [DOI] [PubMed]
- Bruker (2004). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Fun, H.-K., Patil, P. S., Jebas, S. R., Sujith, K. V. & Kalluraya, B. (2008). Acta Cryst. E64, o1594–o1595. [DOI] [PMC free article] [PubMed]
- Nie, Y. (2008). Acta Cryst. E64, o471. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019933/hb5895sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019933/hb5895Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811019933/hb5895Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


