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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 4;67(Pt 7):o1564. doi: 10.1107/S1600536811019933

4-[(E)-(2,3-Dichloro­benzyl­idene)amino]­phenol

Li-Xia Sun a, Yun-Dan Yu a, Guo-Ying Wei a,*
PMCID: PMC3151848  PMID: 21836977

Abstract

In the title compound, C13H9Cl2NO, the dihedral angle between the benzene rings is 54.22 (10)°. In the crystal, mol­ecules are linked by O—H⋯N inter­molecular hydrogen bonds, forming a zigzag C(7) chain along the a axis.

Related literature

For the biological properties of Schiff base ligands, see: Bedia et al. (2006). For related structures, see: Fun et al. (2008); Alhadi et al. (2008); Nie (2008). For reference bond-length values, see: Allen et al. (1987).graphic file with name e-67-o1564-scheme1.jpg

Experimental

Crystal data

  • C13H9Cl2NO

  • M r = 266.11

  • Orthorhombic, Inline graphic

  • a = 6.049 (4) Å

  • b = 10.038 (6) Å

  • c = 19.645 (12) Å

  • V = 1192.8 (13) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.52 mm−1

  • T = 296 K

  • 0.25 × 0.23 × 0.21 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.880, T max = 0.898

  • 4853 measured reflections

  • 2184 independent reflections

  • 1998 reflections with I > 2σ(I)

  • R int = 0.037

Refinement

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.072

  • S = 1.17

  • 2184 reflections

  • 156 parameters

  • H-atom parameters constrained

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.14 e Å−3

  • Absolute structure: Flack (1983), 869 Friedel pairs

  • Flack parameter: 0.04 (6)

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019933/hb5895sup1.cif

e-67-o1564-sup1.cif (16.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019933/hb5895Isup2.hkl

e-67-o1564-Isup2.hkl (107.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019933/hb5895Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N1i 0.82 1.99 2.811 (3) 174

Symmetry code: (i) Inline graphic.

Acknowledgments

This project was supported by the Zhejiang Provincial Natural Science Foundation of China (grant No. Y4110290).

supplementary crystallographic information

Comment

Schiff base ligands have received considerable attention during the last decades, mainly because of their structures or for their biological properties (Bedia et al., 2006). We report here the crystal structure of the title new Schiff base compound, (I). In (I) (Fig. 1), the bond lengths and angles are normal and comparable to the values observed in similar compounds (Nie et al., 2008; Fun et al., 2008; Alhadi et al., 2008). The dihedral angle between the two aromatic rings in the Schiff base molecule is 54.22 (10) °, indicating that two these rings are not coplanar. Intermolecular O—H···N hydrogen bonds (Table 1) link the molecules along a axis (Fig. 2).

Experimental

A mixture of 2,3-dichlorobenzaldehyde (5 mmol), 4-aminophenol (5 mmol) and methanol (40 ml) was refluxed for 2 h. It was then allowed to cool and filtered. Recrystallization of the crude product from methanol yielded yellow blocks of (I).

Refinement

H atoms were positioned geometrically and refined using the riding-model approximation, with C—H = 0.93–0.97 Å, O—H = 0.82 Å, and Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compounds with 50% probability displacement ellipsoids for non-hydrogen atoms.

Fig. 2.

Fig. 2.

Molecular packing of the title compound, viewed along the a axis. Hydrogen bonds are shown as dashed lines.

Crystal data

C13H9Cl2NO F(000) = 544
Mr = 266.11 Dx = 1.482 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 2869 reflections
a = 6.049 (4) Å θ = 2.3–27.2°
b = 10.038 (6) Å µ = 0.52 mm1
c = 19.645 (12) Å T = 296 K
V = 1192.8 (13) Å3 Block, yellow
Z = 4 0.25 × 0.23 × 0.21 mm

Data collection

Bruker APEXII CCD diffractometer 2184 independent reflections
Radiation source: fine-focus sealed tube 1998 reflections with I > 2σ(I)
graphite Rint = 0.037
φ and ω scans θmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −7→7
Tmin = 0.880, Tmax = 0.898 k = −8→12
4853 measured reflections l = −23→21

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.030 w = 1/[σ2(Fo2) + (0.0269P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.072 (Δ/σ)max < 0.001
S = 1.17 Δρmax = 0.15 e Å3
2184 reflections Δρmin = −0.14 e Å3
156 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraints Extinction coefficient: 0.073 (4)
Primary atom site location: structure-invariant direct methods Absolute structure: Flack (1983), 869 Friedel pairs
Secondary atom site location: difference Fourier map Flack parameter: 0.04 (6)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6782 (4) 0.13161 (18) 0.30064 (9) 0.0315 (5)
C2 0.8717 (4) 0.2032 (2) 0.29247 (10) 0.0380 (5)
H2 0.9883 0.1903 0.3226 0.046*
C3 0.8932 (4) 0.2937 (2) 0.23991 (10) 0.0353 (5)
H3 1.0241 0.3413 0.2347 0.042*
C4 0.7192 (3) 0.31355 (18) 0.19496 (10) 0.0305 (5)
C5 0.5261 (4) 0.2441 (2) 0.20450 (11) 0.0389 (5)
H5 0.4074 0.2593 0.1754 0.047*
C6 0.5046 (4) 0.1522 (2) 0.25642 (11) 0.0380 (5)
H6 0.3739 0.1045 0.2615 0.046*
C7 0.9040 (4) 0.3995 (2) 0.10174 (10) 0.0305 (5)
H7 1.0160 0.3406 0.1138 0.037*
C8 0.9356 (3) 0.48183 (19) 0.04113 (10) 0.0302 (5)
C9 0.7862 (4) 0.5815 (2) 0.02412 (11) 0.0404 (5)
H9 0.6685 0.5997 0.0531 0.049*
C10 0.8097 (4) 0.6539 (2) −0.03507 (13) 0.0528 (6)
H10 0.7081 0.7203 −0.0457 0.063*
C11 0.9837 (5) 0.6281 (2) −0.07860 (12) 0.0502 (6)
H11 0.9987 0.6761 −0.1188 0.060*
C12 1.1338 (4) 0.5315 (2) −0.06226 (10) 0.0392 (5)
C13 1.1149 (4) 0.45927 (17) −0.00259 (10) 0.0317 (5)
Cl1 1.35264 (12) 0.50375 (7) −0.11774 (3) 0.0628 (2)
Cl2 1.31056 (9) 0.33967 (5) 0.01639 (3) 0.04412 (18)
N1 0.7322 (3) 0.40395 (17) 0.13882 (8) 0.0321 (4)
O1 0.6681 (3) 0.04560 (15) 0.35434 (8) 0.0447 (4)
H1 0.5510 0.0045 0.3531 0.067*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0295 (12) 0.0359 (10) 0.0290 (10) −0.0003 (9) 0.0016 (9) 0.0003 (8)
C2 0.0288 (12) 0.0525 (12) 0.0326 (11) −0.0050 (10) −0.0052 (9) 0.0053 (9)
C3 0.0249 (12) 0.0454 (12) 0.0355 (11) −0.0058 (10) 0.0016 (9) 0.0011 (9)
C4 0.0271 (12) 0.0343 (10) 0.0302 (10) 0.0027 (9) 0.0046 (8) 0.0020 (8)
C5 0.0230 (12) 0.0556 (14) 0.0382 (12) 0.0002 (10) −0.0027 (10) 0.0068 (10)
C6 0.0241 (11) 0.0480 (12) 0.0419 (12) −0.0102 (11) 0.0010 (9) 0.0070 (10)
C7 0.0270 (11) 0.0325 (10) 0.0319 (11) 0.0014 (9) −0.0015 (9) 0.0009 (8)
C8 0.0271 (11) 0.0311 (10) 0.0323 (10) −0.0043 (9) −0.0019 (8) −0.0004 (8)
C9 0.0368 (13) 0.0421 (11) 0.0424 (12) 0.0024 (10) 0.0006 (11) 0.0075 (10)
C10 0.0516 (16) 0.0468 (13) 0.0601 (15) 0.0043 (13) −0.0085 (13) 0.0184 (12)
C11 0.0582 (17) 0.0521 (14) 0.0403 (13) −0.0114 (13) −0.0060 (12) 0.0166 (11)
C12 0.0396 (14) 0.0467 (12) 0.0312 (11) −0.0145 (11) 0.0007 (10) −0.0038 (9)
C13 0.0323 (12) 0.0321 (10) 0.0309 (11) −0.0072 (8) −0.0015 (9) −0.0021 (8)
Cl1 0.0631 (5) 0.0830 (5) 0.0424 (4) −0.0188 (4) 0.0200 (3) −0.0021 (3)
Cl2 0.0381 (3) 0.0505 (3) 0.0437 (3) 0.0092 (3) 0.0070 (3) −0.0034 (2)
N1 0.0269 (10) 0.0360 (9) 0.0334 (9) 0.0021 (7) 0.0006 (8) 0.0007 (7)
O1 0.0372 (10) 0.0563 (9) 0.0407 (8) −0.0109 (8) −0.0033 (7) 0.0166 (7)

Geometric parameters (Å, °)

C1—O1 1.365 (2) C7—H7 0.9300
C1—C6 1.379 (3) C8—C9 1.390 (3)
C1—C2 1.382 (3) C8—C13 1.402 (3)
C2—C3 1.382 (3) C9—C10 1.378 (3)
C2—H2 0.9300 C9—H9 0.9300
C3—C4 1.388 (3) C10—C11 1.381 (4)
C3—H3 0.9300 C10—H10 0.9300
C4—C5 1.373 (3) C11—C12 1.366 (3)
C4—N1 1.430 (2) C11—H11 0.9300
C5—C6 1.381 (3) C12—C13 1.383 (3)
C5—H5 0.9300 C12—Cl1 1.737 (2)
C6—H6 0.9300 C13—Cl2 1.727 (2)
C7—N1 1.270 (3) O1—H1 0.8200
C7—C8 1.462 (3)
O1—C1—C6 123.22 (19) C9—C8—C13 118.18 (19)
O1—C1—C2 117.18 (18) C9—C8—C7 121.20 (19)
C6—C1—C2 119.58 (18) C13—C8—C7 120.60 (18)
C3—C2—C1 120.57 (19) C10—C9—C8 121.0 (2)
C3—C2—H2 119.7 C10—C9—H9 119.5
C1—C2—H2 119.7 C8—C9—H9 119.5
C2—C3—C4 119.86 (19) C9—C10—C11 120.1 (2)
C2—C3—H3 120.1 C9—C10—H10 119.9
C4—C3—H3 120.1 C11—C10—H10 119.9
C5—C4—C3 119.06 (18) C12—C11—C10 119.6 (2)
C5—C4—N1 118.29 (18) C12—C11—H11 120.2
C3—C4—N1 122.66 (17) C10—C11—H11 120.2
C4—C5—C6 121.3 (2) C11—C12—C13 121.1 (2)
C4—C5—H5 119.3 C11—C12—Cl1 118.21 (17)
C6—C5—H5 119.3 C13—C12—Cl1 120.71 (18)
C1—C6—C5 119.6 (2) C12—C13—C8 119.9 (2)
C1—C6—H6 120.2 C12—C13—Cl2 119.40 (17)
C5—C6—H6 120.2 C8—C13—Cl2 120.68 (15)
N1—C7—C8 123.66 (19) C7—N1—C4 117.70 (17)
N1—C7—H7 118.2 C1—O1—H1 109.5
C8—C7—H7 118.2
O1—C1—C2—C3 −179.00 (19) C9—C10—C11—C12 −0.8 (4)
C6—C1—C2—C3 −0.8 (3) C10—C11—C12—C13 −0.2 (3)
C1—C2—C3—C4 0.2 (3) C10—C11—C12—Cl1 −179.07 (19)
C2—C3—C4—C5 1.3 (3) C11—C12—C13—C8 2.0 (3)
C2—C3—C4—N1 −178.85 (18) Cl1—C12—C13—C8 −179.16 (15)
C3—C4—C5—C6 −2.1 (3) C11—C12—C13—Cl2 −179.20 (17)
N1—C4—C5—C6 177.97 (19) Cl1—C12—C13—Cl2 −0.4 (2)
O1—C1—C6—C5 178.0 (2) C9—C8—C13—C12 −2.8 (3)
C2—C1—C6—C5 0.0 (3) C7—C8—C13—C12 175.34 (18)
C4—C5—C6—C1 1.5 (3) C9—C8—C13—Cl2 178.46 (15)
N1—C7—C8—C9 6.8 (3) C7—C8—C13—Cl2 −3.4 (3)
N1—C7—C8—C13 −171.26 (19) C8—C7—N1—C4 177.33 (18)
C13—C8—C9—C10 1.8 (3) C5—C4—N1—C7 −133.5 (2)
C7—C8—C9—C10 −176.3 (2) C3—C4—N1—C7 46.7 (3)
C8—C9—C10—C11 −0.1 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1i 0.82 1.99 2.811 (3) 174

Symmetry codes: (i) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5895).

References

  1. Alhadi, A. A., Ali, H. M., Puvaneswary, S., Robinson, W. T. & Ng, S. W. (2008). Acta Cryst. E64, o1584. [DOI] [PMC free article] [PubMed]
  2. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  3. Bedia, K. K., Elcin, O., Seda, U., Fatma, K., Nathaly, S., Sevim, R. & Dimoglo, A. (2006). Eur. J. Med. Chem. 41, 1253–1261. [DOI] [PubMed]
  4. Bruker (2004). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  6. Fun, H.-K., Patil, P. S., Jebas, S. R., Sujith, K. V. & Kalluraya, B. (2008). Acta Cryst. E64, o1594–o1595. [DOI] [PMC free article] [PubMed]
  7. Nie, Y. (2008). Acta Cryst. E64, o471. [DOI] [PMC free article] [PubMed]
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019933/hb5895sup1.cif

e-67-o1564-sup1.cif (16.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019933/hb5895Isup2.hkl

e-67-o1564-Isup2.hkl (107.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811019933/hb5895Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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