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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 18;67(Pt 7):m944. doi: 10.1107/S1600536811022756

[μ-1,4-Bis(1,2,4-triazol-1-ylmeth­yl)benzene]­bis­[aqua­(pyridine-2,6-dicarboxyl­ato)copper(II)] monohydrate

Gui-Ying Dong a,*, Cui-Hong He a, Liu Tong-Fei a, Xiao-Chen Deng b, Xiao-Ge Shi b
PMCID: PMC3151849  PMID: 21836927

Abstract

The title compound, [Cu2(C7H3NO4)2(C12H12N6)(H2O)2]·H2O, displays a discrete dinuclear structure, in which the central CuII atom is five-coordinated in a distorted square-based pyramidal coordination geometry and the flexible ligand 1,4-bis­(1,2,4-triazol-1-ylmeth­yl)benzene adopts a bis-monodentate bridging mode linking the CuII atoms. It is further assembled by O—H⋯O hydrogen-bond inter­actions involving both the coordinated and uncoordinated water molecules. The latter exhibits half-occupancy.

Related literature

For the versatile conformations of the flexible 1,4-bis­(1,2,4- triazol-1-yl-meth­yl)benzene ligand and related complexes, see: Arion et al. (2003); Peng et al. (2004, 2006); Meng et al. (2004); Li et al. (2005); Lin & Dong (2007); Ding et al. (2009).graphic file with name e-67-0m944-scheme1.jpg

Experimental

Crystal data

  • [Cu2(C7H3NO4)2(C12H12N6)(H2O)2]·H2O

  • M r = 751.63

  • Monoclinic, Inline graphic

  • a = 4.9017 (4) Å

  • b = 10.3022 (9) Å

  • c = 30.178 (3) Å

  • β = 93.541 (1)°

  • V = 1521.0 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.47 mm−1

  • T = 298 K

  • 0.20 × 0.15 × 0.11 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.881, T max = 0.901

  • 7340 measured reflections

  • 2678 independent reflections

  • 2256 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.161

  • S = 1.06

  • 2678 reflections

  • 217 parameters

  • H-atom parameters constrained

  • Δρmax = 1.40 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022756/jh2295sup1.cif

e-67-0m944-sup1.cif (21.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022756/jh2295Isup2.hkl

e-67-0m944-Isup2.hkl (131.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2W—H2WA⋯O2Wi 0.85 2.15 2.920 (5) 151
O2W—H2WB⋯O2Wii 0.85 1.96 2.807 (5) 179
O1W—H1WA⋯O4iii 0.83 1.93 2.746 (5) 168
O1W—H1WB⋯O3iv 0.86 1.86 2.692 (5) 164

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The authors thank Hebei United University for supporting this work.

supplementary crystallographic information

Comment

1,4-bis(1,2,4-triazol-1-ylmethyl)benzene (btx=1,4-bis(1,2,4-triazol-1-ylmethyl)benzene) is a ditriazole-containing bridge ligand, in which the flexible nature of spacers allows the ligands to bend and rotate when coordinating to metal centers so as to conform the coordination geometries of metal ions.(Arion, et al., 2003; Peng, et al., 2004, 2006; Meng, et al., 2004; Li et al., 2005;Lin et al. 2007; Ding, et al. 2009) To further understand the coordination behavior of this ligand, we report herein the crystal structure of the title compound,(I).

The asymmetric unit of (I) contains one copperII,one 2,6-pyridinedicarboxylato, one half btx ligand, one coordination water molecule and one half free water molecule. The copper center is five-coordinated in distorted square-based pyramidal coordination geometry. As show in Fig.1, selected geometric parameters see table 1.Each copperII is coordinated by one tridentate dipicolinato ligands via their carboxylate and nitrogen donors.(Cu1—N1= 1.908 (3); Cu1—O1=2.007 (3); Cu(1)—O(3)= 2.048 (3) Å) another one (Cu1—N4=1.951 (3) Å) from btx ligand together with one water molecule (Cu1—O1W = 2.217 (4) Å).Two carboxylate oxygen atoms and two nitrogen atoms define a quadrangle equatorial plane, and the water oxygen atom occupies the apical position. Each btx ligand bridges two copper atoms related by a twofold axis into dinuclear structure. The dihedral angle between the imidazole and phenyl rings is 70.0 (4)° in same btx ligang. It is noteworthy that there exist strong hydrogen-bonding interaction(table 2) involving the carboxy group oxygen atoms of dipicolinato ligands as well as coordinated and free water molecules,this may further stabilize the crytal structure.

Experimental

A mixture of Cu(NO3)2 3H2O(120.5 mg, 0.5 mmol), 2,6-Pyridinedicarboxylic acid (167 mg, 1 mmol),NaOH(80 mg, 2 mm mol), btx (60 mg, 0.5 mmol) and water (12 ml) was sealed in a 25 ml teflon-lined stainless steel reactor and heated to 413 K for 72 h. The reaction was cooled to room temperature over a period of 24 h. Blue prism crystals of 1 suitable for X-ray difraction analysis were obtained with a yield of 37%(based btx)

Refinement

H atoms were placed in calculated positions, with C—H = 0.93 or 0.97 Å included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(parent atom).Water H atoms were located in Fourier difference maps and isotropically.

Figures

Fig. 1.

Fig. 1.

Fig. 1. The part molecular structure of (I), showing displacement ellipsoids at the 30% probability level for atoms [symmetry code: (i) -x, -y + 3, -z)

Crystal data

[Cu2(C7H3NO4)2(C12H12N6)(H2O)2]·H2O F(000) = 764
Mr = 751.63 Dx = 1.641 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3568 reflections
a = 4.9017 (4) Å θ = 22.3–3.6°
b = 10.3022 (9) Å µ = 1.47 mm1
c = 30.178 (3) Å T = 298 K
β = 93.541 (1)° Prism, blue
V = 1521.0 (2) Å3 0.20 × 0.15 × 0.11 mm
Z = 2

Data collection

Bruker SMART CCD area-detector diffractometer 2678 independent reflections
Radiation source: fine–focus sealed tube 2256 reflections with I > 2σ(I)
graphite Rint = 0.029
φ and ω scans θmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −5→5
Tmin = 0.881, Tmax = 0.901 k = −12→12
7340 measured reflections l = −35→27

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.1045P)2 + 1.8845P] where P = (Fo2 + 2Fc2)/3
2678 reflections (Δ/σ)max < 0.001
217 parameters Δρmax = 1.40 e Å3
0 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Cu1 0.08344 (10) 0.98034 (5) 0.149509 (16) 0.0318 (2)
O3 −0.1809 (6) 0.9403 (3) 0.19769 (10) 0.0376 (7)
O1 0.3528 (6) 0.9508 (3) 0.10311 (10) 0.0392 (7)
N1 0.1905 (7) 0.8071 (3) 0.16460 (11) 0.0300 (8)
C7 −0.1409 (9) 0.8318 (4) 0.21771 (14) 0.0328 (9)
O4 −0.2555 (7) 0.7960 (3) 0.25024 (11) 0.0469 (8)
N4 −0.0779 (7) 1.1422 (3) 0.12697 (12) 0.0346 (8)
C2 0.3801 (9) 0.7519 (4) 0.14164 (14) 0.0335 (9)
C3 0.4592 (10) 0.6261 (4) 0.15103 (16) 0.0419 (11)
H3 0.5917 0.5859 0.1350 0.050*
C6 0.0697 (8) 0.7462 (4) 0.19736 (13) 0.0309 (9)
O2 0.6818 (8) 0.8113 (4) 0.08671 (12) 0.0565 (10)
C11 −0.1952 (9) 1.4310 (5) 0.02197 (15) 0.0415 (11)
C1 0.4833 (9) 0.8436 (4) 0.10695 (14) 0.0358 (10)
C5 0.1422 (10) 0.6216 (4) 0.20832 (16) 0.0417 (11)
H5 0.0613 0.5787 0.2312 0.050*
C12 −0.0882 (11) 1.3819 (5) −0.01557 (17) 0.0486 (12)
H12 −0.1473 1.3016 −0.0266 0.058*
C4 0.3384 (10) 0.5605 (5) 0.18465 (17) 0.0453 (11)
H4 0.3890 0.4754 0.1914 0.054*
O1W 0.3552 (8) 1.0793 (4) 0.20033 (14) 0.0698 (13)
N2 −0.2780 (8) 1.2853 (4) 0.08451 (13) 0.0439 (10)
C13 −0.1072 (11) 1.5492 (5) 0.03729 (17) 0.0492 (12)
H13 −0.1788 1.5841 0.0625 0.059*
C10 −0.4037 (11) 1.3552 (6) 0.04620 (19) 0.0576 (15)
H10A −0.5411 1.4144 0.0562 0.069*
H10B −0.4942 1.2936 0.0259 0.069*
C9 −0.1903 (11) 1.1643 (5) 0.08746 (16) 0.0465 (12)
H9 −0.2064 1.1037 0.0646 0.056*
N3 −0.2233 (16) 1.3460 (5) 0.12323 (17) 0.092 (2)
C8 −0.1028 (17) 1.2542 (6) 0.14744 (19) 0.080 (2)
H8 −0.0398 1.2672 0.1768 0.096*
O2W 0.746 (3) 0.9295 (7) 0.0049 (2) 0.092 (4) 0.50
H2WA 0.9152 0.9472 0.0077 0.137* 0.50
H2WB 0.5966 0.9714 0.0018 0.137* 0.50
H1WA 0.3201 1.1370 0.2183 0.137*
H1WB 0.5177 1.0475 0.2023 0.137*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.0373 (4) 0.0240 (3) 0.0348 (4) 0.0079 (2) 0.0068 (2) 0.00618 (19)
O3 0.0425 (17) 0.0334 (16) 0.0376 (16) 0.0129 (14) 0.0083 (13) 0.0073 (14)
O1 0.0469 (18) 0.0330 (16) 0.0390 (17) 0.0053 (14) 0.0130 (14) 0.0077 (13)
N1 0.0351 (19) 0.0255 (17) 0.0296 (18) 0.0040 (14) 0.0026 (14) 0.0005 (14)
C7 0.037 (2) 0.030 (2) 0.033 (2) 0.0001 (18) 0.0042 (18) 0.0012 (17)
O4 0.063 (2) 0.0381 (18) 0.0418 (18) 0.0049 (16) 0.0205 (16) 0.0073 (15)
N4 0.042 (2) 0.0274 (18) 0.035 (2) 0.0085 (15) 0.0039 (15) 0.0055 (15)
C2 0.038 (2) 0.030 (2) 0.032 (2) 0.0025 (18) 0.0025 (17) −0.0045 (17)
C3 0.047 (3) 0.031 (2) 0.048 (3) 0.013 (2) 0.009 (2) −0.003 (2)
C6 0.036 (2) 0.026 (2) 0.030 (2) 0.0017 (17) −0.0005 (17) 0.0018 (17)
O2 0.063 (2) 0.054 (2) 0.056 (2) 0.0176 (18) 0.0296 (18) 0.0073 (17)
C11 0.043 (3) 0.038 (3) 0.043 (3) 0.010 (2) −0.006 (2) 0.015 (2)
C1 0.044 (3) 0.031 (2) 0.033 (2) 0.0020 (19) 0.0056 (19) −0.0015 (17)
C5 0.051 (3) 0.030 (2) 0.044 (3) 0.004 (2) 0.008 (2) 0.008 (2)
C12 0.062 (3) 0.031 (2) 0.051 (3) 0.004 (2) −0.003 (2) −0.003 (2)
C4 0.056 (3) 0.024 (2) 0.056 (3) 0.010 (2) 0.008 (2) 0.006 (2)
O1W 0.049 (2) 0.074 (3) 0.083 (3) 0.026 (2) −0.0229 (19) −0.046 (2)
N2 0.046 (2) 0.041 (2) 0.045 (2) 0.0095 (18) −0.0008 (17) 0.0148 (18)
C13 0.066 (3) 0.045 (3) 0.037 (3) 0.013 (3) 0.007 (2) −0.003 (2)
C10 0.049 (3) 0.060 (3) 0.063 (3) 0.010 (3) −0.004 (2) 0.034 (3)
C9 0.068 (3) 0.031 (2) 0.040 (3) 0.005 (2) −0.005 (2) 0.006 (2)
N3 0.173 (6) 0.051 (3) 0.049 (3) 0.057 (4) −0.007 (3) 0.000 (2)
C8 0.155 (7) 0.043 (3) 0.039 (3) 0.042 (4) −0.015 (3) −0.001 (2)
O2W 0.235 (12) 0.026 (4) 0.017 (3) 0.038 (5) 0.034 (5) 0.010 (3)

Geometric parameters (Å, °)

Cu1—N1 1.908 (3) C11—C10 1.510 (7)
Cu1—N4 1.950 (3) C5—C4 1.384 (7)
Cu1—O1 2.006 (3) C5—H5 0.9300
Cu1—O3 2.048 (3) C12—C13i 1.389 (7)
Cu1—O1W 2.217 (4) C12—H12 0.9300
O3—C7 1.280 (5) C4—H4 0.9300
O1—C1 1.278 (5) O1W—H1WA 0.8301
N1—C2 1.322 (5) O1W—H1WB 0.8599
N1—C6 1.339 (5) N2—C9 1.319 (6)
C7—O4 1.218 (5) N2—N3 1.338 (6)
C7—C6 1.517 (6) N2—C10 1.466 (6)
N4—C9 1.302 (6) C13—C12i 1.389 (7)
N4—C8 1.318 (7) C13—H13 0.9300
C2—C3 1.377 (6) C10—H10A 0.9700
C2—C1 1.520 (6) C10—H10B 0.9700
C3—C4 1.382 (7) C9—H9 0.9300
C3—H3 0.9300 N3—C8 1.313 (7)
C6—C5 1.367 (6) C8—H8 0.9300
O2—C1 1.226 (5) O2W—H2WA 0.8500
C11—C13 1.364 (8) O2W—H2WB 0.8482
C11—C12 1.374 (7)
N1—Cu1—N4 169.43 (16) O2—C1—C2 118.8 (4)
N1—Cu1—O1 80.88 (13) O1—C1—C2 114.4 (4)
N4—Cu1—O1 99.00 (14) C6—C5—C4 118.7 (4)
N1—Cu1—O3 79.57 (13) C6—C5—H5 120.6
N4—Cu1—O3 99.15 (13) C4—C5—H5 120.6
O1—Cu1—O3 159.60 (14) C11—C12—C13i 120.7 (5)
N1—Cu1—O1W 96.92 (16) C11—C12—H12 119.7
N4—Cu1—O1W 93.53 (15) C13i—C12—H12 119.7
O1—Cu1—O1W 99.18 (15) C3—C4—C5 120.0 (4)
O3—Cu1—O1W 88.91 (16) C3—C4—H4 120.0
C7—O3—Cu1 115.2 (3) C5—C4—H4 120.0
C1—O1—Cu1 114.5 (3) Cu1—O1W—H1WA 129.9
C2—N1—C6 122.9 (4) Cu1—O1W—H1WB 112.7
C2—N1—Cu1 118.0 (3) H1WA—O1W—H1WB 117.2
C6—N1—Cu1 119.1 (3) C9—N2—N3 109.6 (4)
O4—C7—O3 125.5 (4) C9—N2—C10 129.6 (5)
O4—C7—C6 120.6 (4) N3—N2—C10 120.7 (4)
O3—C7—C6 113.9 (3) C11—C13—C12i 120.6 (5)
C9—N4—C8 103.3 (4) C11—C13—H13 119.7
C9—N4—Cu1 127.5 (3) C12i—C13—H13 119.7
C8—N4—Cu1 129.2 (3) N2—C10—C11 111.8 (4)
N1—C2—C3 119.7 (4) N2—C10—H10A 109.2
N1—C2—C1 111.6 (4) C11—C10—H10A 109.2
C3—C2—C1 128.7 (4) N2—C10—H10B 109.2
C2—C3—C4 118.9 (4) C11—C10—H10B 109.2
C2—C3—H3 120.6 H10A—C10—H10B 107.9
C4—C3—H3 120.6 N4—C9—N2 110.2 (4)
N1—C6—C5 119.9 (4) N4—C9—H9 124.9
N1—C6—C7 111.7 (3) N2—C9—H9 124.9
C5—C6—C7 128.5 (4) C8—N3—N2 102.0 (5)
C13—C11—C12 118.7 (5) N3—C8—N4 114.9 (5)
C13—C11—C10 120.4 (5) N3—C8—H8 122.5
C12—C11—C10 120.9 (5) N4—C8—H8 122.5
O2—C1—O1 126.7 (4) H2WA—O2W—H2WB 137.0

Symmetry codes: (i) −x, −y+3, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2W—H2WA···O2Wii 0.85 2.15 2.920 (5) 151.
O2W—H2WB···O2Wiii 0.85 1.96 2.807 (5) 179.
O1W—H1WA···O4iv 0.83 1.93 2.746 (5) 168.
O1W—H1WB···O3v 0.86 1.86 2.692 (5) 164.

Symmetry codes: (ii) −x+2, −y+2, −z; (iii) −x+1, −y+2, −z; (iv) −x, y+1/2, −z+1/2; (v) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JH2295).

References

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  2. Bruker (1998). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
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  5. Lin, J. & Dong, G.-Y. (2007). Acta Cryst. E63, m1944.
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  9. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  10. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022756/jh2295sup1.cif

e-67-0m944-sup1.cif (21.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022756/jh2295Isup2.hkl

e-67-0m944-Isup2.hkl (131.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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