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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):m900–m901. doi: 10.1107/S1600536811021696

Diaqua­bis­(4-bromo­benzoato-κO)bis­(nicotinamide-κN 1)copper(II)

Hacali Necefoğlu a, Füreya Elif Özbek a, Vijdan Öztürk a, Barış Tercan b, Tuncer Hökelek c,*
PMCID: PMC3151863  PMID: 21836889

Abstract

The asymmetric unit of the title mononuclear CuII complex, [Cu(C7H4BrO2)2(C6H6N2O)2(H2O)2], contains one half-mol­ecule, the CuII atom being located on an inversion center. The unit cell contains two nicotinamide (NA), two 4-bromo­benzoate (PBB) ligands and two coordinated water mol­ecules. The four O atoms in the equatorial plane around the CuII ion form a slightly distorted square-planar arrangement, while the slightly distorted octa­hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl­ate group and the adjacent benzene ring is 22.17 (16)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 82.80 (6)°. In the crystal, N—H⋯O, O—H⋯O and C—H⋯O hydrogen bonds link the mol­ecules into a three-dimensional network. A weak C—H⋯π inter­action is also observed.

Related literature

For literature on niacin, see: Krishnamachari (1974). For infomation on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972). For related structures, see: Hökelek et al. (1996, 2009a ,b ); Hökelek & Necefoğlu (1998, 2007); Necefoğlu et al. (2011). For bond-length data, see: Allen et al. (1987).graphic file with name e-67-0m900-scheme1.jpg

Experimental

Crystal data

  • [Cu(C7H4BrO2)2(C6H6N2O)2(H2O)2]

  • M r = 743.84

  • Triclinic, Inline graphic

  • a = 7.7072 (3) Å

  • b = 9.7536 (5) Å

  • c = 9.8471 (4) Å

  • α = 76.273 (2)°

  • β = 74.240 (2)°

  • γ = 85.024 (3)°

  • V = 691.86 (5) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 3.73 mm−1

  • T = 100 K

  • 0.41 × 0.38 × 0.35 mm

Data collection

  • Bruker Kappa APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.236, T max = 0.271

  • 11758 measured reflections

  • 3515 independent reflections

  • 3172 reflections with I > 2σ(I)

  • R int = 0.057

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.108

  • S = 1.13

  • 3515 reflections

  • 203 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.86 e Å−3

  • Δρmin = −1.29 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021696/su2279sup1.cif

e-67-0m900-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021696/su2279Isup2.hkl

e-67-0m900-Isup2.hkl (168.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the N1/C8–C12 pyridine ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H21⋯O2i 0.85 (3) 2.06 (3) 2.831 (2) 151 (3)
N2—H22⋯O3ii 0.88 (3) 2.03 (3) 2.893 (3) 166 (3)
O4—H41⋯O2iii 0.87 (4) 1.86 (4) 2.718 (2) 167 (4)
O4—H42⋯O3iv 0.78 (4) 2.17 (4) 2.911 (2) 159 (4)
C6—H6⋯O2v 0.95 2.43 3.377 (3) 172
C4—H4⋯Cgvi 0.95 2.63 3.581 (3) 176

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The authors are indebted to Anadolu University and the Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for the use of X-ray diffractometer. This work was supported financially by the Scientific and Technological Research Council of Turkey (grant No. 108 T657).

supplementary crystallographic information

Comment

As a part of our ongoing investigations of transition metal complexes of nicotinamide (NA), one form of niacin (Krishnamachari, 1974), and/or the nicotinic acid derivative N,N-diethylnicotinamide (DENA), an important respiratory stimulant (Bigoli et al., 1972), the title compound was synthesized and its crystal structure is reported herein.

The asymmetric unit of the title mononuclear CuIIcomplex, (Fig. 1), contains one-half molecule. It consists of two nicotinamide (NA), two 4-bromobenzoate (PBB) ligands and two coordinated water molecules, all ligands coordinating in a monodentate manner. Atom Cu1 is located on an inversion center. The crystal structures of similar complexes of CuII, CoII, NiII, MnII and ZnII ions, [Cu(C7H5O2)2(C10H14N2O)2] (Hökelek et al., 1996), [Co(C6H6N2O)2(C7H4NO4)2(H2O)2] (Hökelek & Necefoğlu, 1998), [Co(C9H9O2)2(C10H14N2O)2(H2O)2] (Necefoğlu et al., 2011), [Ni(C7H4ClO2)2(C6H6N2O)2(H2O)2] (Hökelek et al., 2009a), [Mn(C9H10NO2)2(H2O)4].2H2O (Hökelek & Necefoğlu, 2007) and [Zn(C7H4BrO2)2(C6H6N2O)2(H2O)2] (Hökelek et al., 2009b) have also been reported. In the copper(II) complex mentioned above the two benzoate ions coordinate to the CuII atom as bidentate ligands, while in the other structures all the ligands coordinate in a monodentate manner.

In the title complex, the four symmetry related O atoms (O1, O1', O4 and O4') in the equatorial plane around the CuII ion form a slightly distorted square-planar arrangement, while the slightly distorted octahedral coordination is completed by the two symmetry related N atoms of the NA ligands (N1 and N1') in the axial positions. The near equalities of the C1—O1 [1.272 (3) Å] and C1—O2 [1.246 (3) Å] bonds in the carboxylate group indicate delocalized bonding arrangement, rather than localized single and double bonds. The Cu—O bond lengths are 1.9756 (16) Å (for benzoate oxygens) and 2.4199 (16) Å (for water oxygens), and the Cu—N bond length is 2.0116 (16) Å, close to standard values (Allen et al., 1987). The Cu atom is displaced out of the mean-plane of the carboxylate group (O1/C1/O2) by -0.5279 (1) Å. The dihedral angle between the planar carboxylate group and the adjacent benzene ring A (C2—C7) is 22.17 (16)°. The benzene A (C2—C7) and the pyridine B (N1/C8—C12) rings are oriented at a dihedral angle of A/B = 82.80 (6)°.

In the crystal, intermolecular N—H···O, O—H···O and C—H···O hydrogen bonds link the molecules into a three-dimensional network (Table 1). There also exists a weak C-H···π interaction (Table 1).

Experimental

The title compound was prepared by the reaction of CuSO4.5H2O (1.23 g, 5 mmol) in H2O (20 ml) and NA (1.22 g, 10 mmol) in H2O (20 ml) with sodium 4-bromobenzoate (2.23 g, 10 mmol) in H2O (100 ml) at room temperature. The mixture was filtered and set aside to crystallize at ambient temperature for three weeks, giving blue single crystals.

Refinement

Atoms H21 and H22 (for NH2) and H41 and H42 (for H2O) were located in a difference Fourier map and were freely refined. The C-bound H-atoms were positioned geometrically with C—H = 0.95 Å for aromatic H-atoms, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level [symmetry code: (') -x, -y, -z+1].

Crystal data

[Cu(C7H4BrO2)2(C6H6N2O)2(H2O)2] Z = 1
Mr = 743.84 F(000) = 371
Triclinic, P1 Dx = 1.785 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.7072 (3) Å Cell parameters from 7694 reflections
b = 9.7536 (5) Å θ = 2.2–28.7°
c = 9.8471 (4) Å µ = 3.73 mm1
α = 76.273 (2)° T = 100 K
β = 74.240 (2)° Block, blue
γ = 85.024 (3)° 0.41 × 0.38 × 0.35 mm
V = 691.86 (5) Å3

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer 3515 independent reflections
Radiation source: fine-focus sealed tube 3172 reflections with I > 2σ(I)
graphite Rint = 0.057
φ and ω scans θmax = 28.7°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −10→10
Tmin = 0.236, Tmax = 0.271 k = −12→13
11758 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108 H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.0563P)2 + 0.169P] where P = (Fo2 + 2Fc2)/3
3515 reflections (Δ/σ)max = 0.001
203 parameters Δρmax = 0.86 e Å3
0 restraints Δρmin = −1.29 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.50803 (3) 0.60173 (3) 0.78887 (3) 0.02585 (11)
Cu1 0.0000 0.0000 0.5000 0.00979 (12)
O1 0.1042 (2) 0.17464 (16) 0.50913 (16) 0.0123 (3)
O2 −0.1351 (2) 0.26522 (18) 0.64918 (17) 0.0160 (3)
O3 0.4297 (2) −0.00851 (18) 0.84131 (16) 0.0182 (4)
O4 0.3099 (2) −0.0838 (2) 0.43625 (18) 0.0172 (4)
H41 0.271 (5) −0.146 (4) 0.402 (4) 0.036 (9)*
H42 0.383 (5) −0.042 (4) 0.371 (4) 0.043 (11)*
N1 −0.0003 (2) −0.08494 (19) 0.70725 (18) 0.0111 (4)
N2 0.3330 (3) −0.1428 (2) 1.0661 (2) 0.0176 (4)
H21 0.251 (4) −0.189 (3) 1.134 (3) 0.028 (10)*
H22 0.417 (4) −0.110 (3) 1.094 (3) 0.016 (7)*
C1 0.0294 (3) 0.2585 (2) 0.5904 (2) 0.0103 (4)
C2 0.1508 (3) 0.3509 (2) 0.6240 (2) 0.0116 (4)
C3 0.0789 (3) 0.4675 (2) 0.6809 (2) 0.0149 (4)
H3 −0.0442 0.4943 0.6883 0.018*
C4 0.1860 (3) 0.5448 (3) 0.7267 (3) 0.0174 (5)
H4 0.1375 0.6251 0.7644 0.021*
C5 0.3644 (3) 0.5032 (2) 0.7167 (2) 0.0145 (4)
C6 0.4403 (3) 0.3898 (2) 0.6570 (2) 0.0158 (5)
H6 0.5638 0.3638 0.6490 0.019*
C7 0.3328 (3) 0.3151 (2) 0.6094 (2) 0.0144 (4)
H7 0.3837 0.2384 0.5663 0.017*
C8 −0.1393 (3) −0.1592 (2) 0.8002 (2) 0.0132 (4)
H8 −0.2407 −0.1721 0.7675 0.016*
C9 −0.1386 (3) −0.2178 (3) 0.9430 (2) 0.0170 (5)
H9 −0.2382 −0.2703 1.0072 0.020*
C10 0.0077 (3) −0.1992 (2) 0.9903 (2) 0.0150 (4)
H10 0.0101 −0.2388 1.0877 0.018*
C11 0.1524 (3) −0.1221 (2) 0.8948 (2) 0.0109 (4)
C12 0.1421 (3) −0.0671 (2) 0.7527 (2) 0.0122 (4)
H12 0.2405 −0.0151 0.6859 0.015*
C13 0.3162 (3) −0.0880 (2) 0.9325 (2) 0.0137 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.02453 (18) 0.03006 (18) 0.03230 (18) −0.00115 (12) −0.01163 (13) −0.01980 (13)
Cu1 0.0109 (2) 0.0129 (2) 0.00714 (19) 0.00162 (14) −0.00356 (14) −0.00453 (14)
O1 0.0122 (7) 0.0149 (8) 0.0112 (7) −0.0005 (6) −0.0023 (6) −0.0064 (6)
O2 0.0104 (8) 0.0214 (9) 0.0164 (8) 0.0013 (6) −0.0016 (6) −0.0073 (6)
O3 0.0165 (8) 0.0292 (9) 0.0101 (7) −0.0054 (7) −0.0030 (6) −0.0053 (7)
O4 0.0150 (8) 0.0222 (9) 0.0147 (8) 0.0026 (7) −0.0015 (7) −0.0085 (7)
N1 0.0115 (9) 0.0131 (9) 0.0100 (8) 0.0037 (7) −0.0032 (7) −0.0062 (7)
N2 0.0172 (10) 0.0277 (11) 0.0090 (9) −0.0027 (9) −0.0044 (8) −0.0043 (8)
C1 0.0091 (9) 0.0127 (10) 0.0087 (9) −0.0004 (7) −0.0024 (8) −0.0014 (8)
C2 0.0141 (10) 0.0129 (10) 0.0083 (9) 0.0016 (8) −0.0027 (8) −0.0038 (8)
C3 0.0132 (10) 0.0162 (11) 0.0152 (10) 0.0034 (8) −0.0025 (8) −0.0057 (9)
C4 0.0200 (12) 0.0152 (11) 0.0189 (11) 0.0042 (9) −0.0040 (9) −0.0102 (9)
C5 0.0151 (11) 0.0175 (11) 0.0139 (10) −0.0030 (8) −0.0044 (8) −0.0075 (8)
C6 0.0117 (10) 0.0192 (11) 0.0179 (10) 0.0029 (8) −0.0045 (9) −0.0070 (9)
C7 0.0157 (11) 0.0150 (11) 0.0131 (10) 0.0030 (8) −0.0024 (8) −0.0072 (8)
C8 0.0112 (10) 0.0169 (11) 0.0129 (10) 0.0037 (8) −0.0030 (8) −0.0073 (8)
C9 0.0175 (12) 0.0190 (11) 0.0129 (10) 0.0011 (9) 0.0000 (9) −0.0055 (9)
C10 0.0153 (11) 0.0189 (11) 0.0097 (9) 0.0008 (9) −0.0009 (8) −0.0045 (8)
C11 0.0107 (10) 0.0140 (10) 0.0094 (9) 0.0019 (8) −0.0025 (8) −0.0061 (8)
C12 0.0136 (10) 0.0143 (10) 0.0100 (9) 0.0037 (8) −0.0030 (8) −0.0065 (8)
C13 0.0153 (11) 0.0187 (11) 0.0090 (10) 0.0043 (9) −0.0035 (8) −0.0082 (8)

Geometric parameters (Å, °)

Br1—C5 1.895 (2) C3—H3 0.9500
Cu1—O1 1.9756 (16) C4—C5 1.383 (3)
Cu1—O1i 1.9756 (16) C4—H4 0.9500
Cu1—N1 2.0116 (16) C6—C5 1.386 (3)
Cu1—N1i 2.0116 (16) C6—C7 1.384 (3)
Cu1—O4 2.4199 (16) C6—H6 0.9500
Cu1—O4i 2.4199 (16) C7—H7 0.9500
O1—C1 1.272 (3) C8—N1 1.340 (3)
O2—C1 1.246 (3) C8—H8 0.9500
O3—C13 1.238 (3) C9—C8 1.388 (3)
O4—H41 0.87 (4) C9—H9 0.9500
O4—H42 0.79 (4) C10—C9 1.371 (3)
N2—C13 1.334 (3) C10—C11 1.391 (3)
N2—H21 0.85 (3) C10—H10 0.9500
N2—H22 0.88 (3) C11—C12 1.396 (3)
C1—C2 1.502 (3) C11—C13 1.493 (3)
C2—C7 1.393 (3) C12—N1 1.331 (3)
C3—C2 1.392 (3) C12—H12 0.9500
C3—C4 1.387 (3)
O1—Cu1—O1i 180.0 C4—C3—C2 120.4 (2)
O1—Cu1—O4 85.01 (6) C4—C3—H3 119.8
O1i—Cu1—O4 94.99 (6) C3—C4—H4 120.5
O1—Cu1—O4i 94.99 (6) C5—C4—C3 119.0 (2)
O1i—Cu1—O4i 85.01 (6) C5—C4—H4 120.5
O1—Cu1—N1 90.51 (7) C4—C5—Br1 119.31 (17)
O1i—Cu1—N1 89.49 (7) C4—C5—C6 121.7 (2)
O1—Cu1—N1i 89.49 (7) C6—C5—Br1 119.02 (17)
O1i—Cu1—N1i 90.51 (7) C5—C6—H6 120.6
O4i—Cu1—O4 180.0 C7—C6—C5 118.7 (2)
N1i—Cu1—N1 180.0 C7—C6—H6 120.6
N1—Cu1—O4 86.82 (6) C2—C7—H7 119.6
N1i—Cu1—O4 93.18 (6) C6—C7—C2 120.8 (2)
N1—Cu1—O4i 93.18 (6) C6—C7—H7 119.6
N1i—Cu1—O4i 86.82 (6) N1—C8—C9 121.6 (2)
C1—O1—Cu1 125.94 (15) N1—C8—H8 119.2
Cu1—O4—H41 87 (2) C9—C8—H8 119.2
Cu1—O4—H42 122 (3) C8—C9—H9 120.4
H41—O4—H42 105 (3) C10—C9—C8 119.3 (2)
C8—N1—Cu1 121.83 (14) C10—C9—H9 120.4
C12—N1—Cu1 118.84 (15) C9—C10—C11 119.6 (2)
C12—N1—C8 119.33 (18) C9—C10—H10 120.2
C13—N2—H21 124.3 (19) C11—C10—H10 120.2
C13—N2—H22 118.4 (19) C10—C11—C12 117.8 (2)
H22—N2—H21 115 (3) C10—C11—C13 125.52 (19)
O1—C1—C2 117.12 (18) C12—C11—C13 116.7 (2)
O2—C1—O1 125.2 (2) N1—C12—C11 122.5 (2)
O2—C1—C2 117.63 (19) N1—C12—H12 118.8
C3—C2—C1 119.91 (19) C11—C12—H12 118.8
C3—C2—C7 119.4 (2) O3—C13—N2 122.1 (2)
C7—C2—C1 120.53 (19) O3—C13—C11 119.74 (18)
C2—C3—H3 119.8 N2—C13—C11 118.2 (2)
O4—Cu1—O1—C1 −150.09 (16) C4—C3—C2—C7 −1.9 (3)
O4i—Cu1—O1—C1 29.91 (16) C2—C3—C4—C5 −0.8 (3)
N1—Cu1—O1—C1 −63.33 (16) C3—C4—C5—Br1 −176.52 (17)
N1i—Cu1—O1—C1 116.67 (16) C3—C4—C5—C6 2.5 (4)
O1—Cu1—N1—C12 −42.00 (15) C7—C6—C5—Br1 177.63 (17)
O1i—Cu1—N1—C12 138.00 (15) C7—C6—C5—C4 −1.4 (4)
O1—Cu1—N1—C8 138.32 (16) C5—C6—C7—C2 −1.4 (3)
O1i—Cu1—N1—C8 −41.68 (16) C9—C8—N1—Cu1 179.86 (16)
O4—Cu1—N1—C12 42.98 (15) C9—C8—N1—C12 0.2 (3)
O4i—Cu1—N1—C12 −137.02 (15) C10—C9—C8—N1 0.1 (3)
O4—Cu1—N1—C8 −136.71 (16) C11—C10—C9—C8 0.0 (3)
O4i—Cu1—N1—C8 43.29 (16) C9—C10—C11—C12 −0.4 (3)
Cu1—O1—C1—O2 −19.3 (3) C9—C10—C11—C13 177.1 (2)
Cu1—O1—C1—C2 157.31 (13) C10—C11—C12—N1 0.7 (3)
O1—C1—C2—C3 164.19 (19) C13—C11—C12—N1 −177.08 (18)
O1—C1—C2—C7 −20.9 (3) C10—C11—C13—O3 −174.0 (2)
O2—C1—C2—C3 −19.0 (3) C10—C11—C13—N2 4.7 (3)
O2—C1—C2—C7 156.0 (2) C12—C11—C13—O3 3.6 (3)
C1—C2—C7—C6 −171.9 (2) C12—C11—C13—N2 −177.76 (19)
C3—C2—C7—C6 3.0 (3) C11—C12—N1—Cu1 179.75 (15)
C4—C3—C2—C1 173.1 (2) C11—C12—N1—C8 −0.6 (3)

Symmetry codes: (i) −x, −y, −z+1.

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N1/C8–C12 pyridine ring.
D—H···A D—H H···A D···A D—H···A
N2—H21···O2ii 0.85 (3) 2.06 (3) 2.831 (2) 151 (3)
N2—H22···O3iii 0.88 (3) 2.03 (3) 2.893 (3) 166 (3)
O4—H41···O2i 0.87 (4) 1.86 (4) 2.718 (2) 167 (4)
O4—H42···O3iv 0.78 (4) 2.17 (4) 2.911 (2) 159 (4)
C6—H6···O2v 0.95 2.43 3.377 (3) 172
C4—H4···Cgvi 0.95 2.63 3.581 (3) 176

Symmetry codes: (ii) −x, −y, −z+2; (iii) −x+1, −y, −z+2; (i) −x, −y, −z+1; (iv) −x+1, −y, −z+1; (v) x+1, y, z; (vi) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2279).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021696/su2279sup1.cif

e-67-0m900-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021696/su2279Isup2.hkl

e-67-0m900-Isup2.hkl (168.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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